Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0012646

Physical Location & Seq

Genomic Coordinates Forward (+)

43153018 .. 43154793

Gene Structure 1776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G019890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1776 bp

ATGTCGATTTCATCATCTTCTTATTCCGGTGGGTTTCTCACGTCCGAGCCCTCAAATTCGATGGTGGCCTCCTCGTCTTCTTCTGGGTCTGTGATGGCAACGCTGCCGTTAGGTATGAAGATGTCATTCATCCCCACCGATTCACTGCTCATCAGGTTTATTCTCCAAGATTCTGCCCCGAATTTTATTATTACTGATTGCGATCTATTTGGCCAGGAAGAGCCCTGGGAAATCTGGGACAGATATCTAGGGTTTCTAAACCAATACAACCCAGATGAACTTTACTTCTTCATGCCTTCGTTAAAGAAACTGAGCCCTAATGGTGGTTCAAGGATCAACCGAACAATTGGCGGTGGTAGTTGGACTCAGAAGGAGCCAATCAAGTTTGTGTGCGACGATGAGGACGAGGGCAGATCAATTGGGGTGAAGAGAAAGCTTAGATATCACAACCAAGGGTCAGATCAACATGTGCAGTGGTGTTTGGATGAGTATACTAGTGTTGAAGTTGCTAATTCATGTGCAATTTTTCGGCTCCGGAAGAACGAGCGACAATACAAATCACTATGTGGTATTTGTGTGGAAGACTTCATTCAGCCTCTACCATTAGGTATGAAGATTTTATTCCGCCCCACGGACTCACAATTGATTAGGTACTTTCTTGGTTTTGATATTGCCCCAGATTTTATTGTTTATGATTGTGATTTGTTTGGTCAGGAAGAGCCTTGGGAAATTTGGGACAGGTATTCCGTGGTTTTTAACAACTCAGACCTTTTGTACTTCTTCACATCGTCTTTGAAGAAACTGGGCTCCAAGGGGAGGGTTTGTAATTTTGGTCGAAGAGTTGGGTCTGGTACATGGAACCAAAAGGAGGCTGTCAAATTGGTGTATGATGATGAAGGCGAGGCCGATCAACAAAGAAAGCCAATTGGGAGAAAGAGGAAACTTAGATATGTTAACCAAGGCTCAGTGCATCATGGGGAGTGGTATTTGGAAGAGTACACAAGCCTTGTTGATGAGGGTGCGATTTTGCTTCTTCGAAAAAACGAGCGGTACAAAGCACCAGCTTCATCAATGTCGTCAGGAATTCCAAGTGAAAAGAAGAGGAAACCTAGAGAAATTGATCGATTGGAGGAGAAGAAGCCTAGAAAGAAAAAAGCGTCGAGACAACTAGTAATGCAGGACTCGGATTTACTTAATAGGCAAAGCCAAACTACTACCAGTCCCACGGTGCCTATTCAACAACGAGAACCTGGCAATGGTGATGATAATTTCGTGTTCTTCAAGGGTATTGATATTGGAACATGGGAGTTTCCTTCTCTGGATGATTTTGTCATGGCTTGCCCTCCTCCACTTGCGGAATGTGACCAAGAAGCATTAGCAACCCTTGAGTTTCCTTCTCTGGATGAATTTGTCATGGCTTATCCTCCTCCACTTAAGGATTGCGATCAAGAAGCATTAGCAACCCTTGAGTTTCCTTCTCCAGATGACTTGGCTTCTCCTTCTCCTCCTCTTGACGACTGTGACCAACAAGTAATAGCAGCAGTCAATATTGATGATAATCATGATCTCACGGGATCCTGTAATGATGATGATATTGCAACATGGAGTTTTCCTATTGTGGACTATTCATTGACTTCTCTTCTTCAAGGAAAATGTGATGAACAAGCATTAGCATTAGTCAACAGCGATGATGATCTACATTTCGTGAAAGAGGATACTGGAGCATGGTGTCCTGCTTTTGTGGATGATTTCTTGATGGCTCTTCTTGTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

591

Amino Acids

66.83

Weight (kDa)

4.66

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	41 - 165	1e-14	No apical meristem (NAM) protein
NAM	PF02365	207 - 334	1.1e-12	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012646)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12150
rosa_chinensis	RchiOBHm_Chr1g0350911
rosa_laevigata	RLG00000028443 RLG00000028444
rosa_multiflora	Rmu_sc0014584.1_g000008 Rmu_sc0014584.1_g000010
rosa_roxburghii	Rroxscaffold_4G00304380 Rroxscaffold_4G00304420
rosa_rugosa	Rorug01G0215100 Rorug06G0023100 Rorug06G0023200
rosa_samantha	Rh1AG229500 Rh1AG229700 Rh1AG229800 Rh1BG075100 Rh1BG199500 Rh1BG199700 Rh1DG227500
rosa_wichuraiana	Rw1G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1228
AccBSI	CCGCTC	1 cut(s)	1048
AccI	GTMKAC	1 cut(s)	491
AccIII	TCCGGA	1 cut(s)	534
AciI	CCGC	4 cut(s)	351, 625, 1048, 1355
AclWI	GGATC	3 cut(s)	341, 1569, 1582
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	5 cut(s)	55, 181, 729, 1083, 1406
AdeI	CACNNNGTG	1 cut(s)	566
AfaI	GTAC	5 cut(s)	653, 776, 853, 998, 1052
AfiI	CCNNNNNNNGG	5 cut(s)	323, 631, 816, 868, 1256
AflII	CTTAAG	1 cut(s)	1433
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	6 cut(s)	330, 503, 796, 1238, 1282, 1646
AhlI	ACTAGT	2 cut(s)	494, 1168
AjiI	CACGTC	1 cut(s)	42
AjnI	CCWGG	3 cut(s)	213, 224, 1249
AluBI	AGCT	2 cut(s)	436, 1064
AluI	AGCT	2 cut(s)	436, 1064
Alw26I	GTCTC	1 cut(s)	1156
AlwI	GGATC	3 cut(s)	341, 1569, 1582
Aor13HI	TCCGGA	1 cut(s)	534
AoxI	GGCC	3 cut(s)	66, 211, 903
ApeKI	GCWGC	2 cut(s)	103, 1538
ApoI	RAATTY	5 cut(s)	55, 181, 729, 1083, 1406
AsuHPI	GGTGA	2 cut(s)	436, 1271
AsuII	TTCGAA	1 cut(s)	1036
BalI	TGGCCA	1 cut(s)	213
BamHI	GGATCC	1 cut(s)	1574
BanI	GGYRCC	1 cut(s)	1228
BanII	GRGCYC	4 cut(s)	51, 225, 317, 809
BbsI	GAAGAC	2 cut(s)	69, 588
BbvI	GCAGC	2 cut(s)	90, 1550
BccI	CCATC	3 cut(s)	55, 88, 1750
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	3 cut(s)	215, 226, 1251
BciVI	GTATCC	1 cut(s)	1708
BcoDI	GTCTC	1 cut(s)	1156
BcuI	ACTAGT	2 cut(s)	494, 1168
BfaI	CTAG	5 cut(s)	248, 495, 1110, 1143, 1169
BfrI	CTTAAG	1 cut(s)	1433
BfuI	GTATCC	1 cut(s)	1708
BisI	GCNGC	2 cut(s)	104, 1539
BlsI	GCNGC	2 cut(s)	105, 1540
Bme1390I	CCNGG	3 cut(s)	215, 226, 1251
BmgBI	CACGTC	1 cut(s)	42
BmiI	GGNNCC	6 cut(s)	375, 533, 808, 860, 1230, 1576
BmrFI	CCNGG	3 cut(s)	215, 226, 1251
BmrI	ACTGGG	1 cut(s)	812
BmsI	GCATC	1 cut(s)	979
BmuI	ACTGGG	1 cut(s)	812
BpiI	GAAGAC	2 cut(s)	69, 588
BpmI	CTGGAG	2 cut(s)	1464, 1740
Bpu14I	TTCGAA	1 cut(s)	1036
BpuEI	CTTGAG	2 cut(s)	1406, 1487
Bsa29I	ATCGAT	1 cut(s)	1123
BsaBI	GATNNNNATC	4 cut(s)	201, 1443, 1557, 1692
BsaJI	CCNNGG	9 cut(s)	224, 225, 451, 630, 722, 747, 810, 958, 1224
BsaWI	WCCGGW	2 cut(s)	26, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	808, 838
Bsc4I	CCNNNNNNNGG	5 cut(s)	323, 631, 816, 868, 1256
Bse1I	ACTGG	3 cut(s)	807, 1218, 1723
Bse3DI	GCAATG	1 cut(s)	1261
Bse8I	GATNNNNATC	4 cut(s)	201, 1443, 1557, 1692
BseAI	TCCGGA	1 cut(s)	534
BseBI	CCWGG	3 cut(s)	215, 226, 1251
BseCI	ATCGAT	1 cut(s)	1123
BseDI	CCNNGG	9 cut(s)	224, 225, 451, 630, 722, 747, 810, 958, 1224
BseGI	GGATG	5 cut(s)	129, 490, 1327, 1408, 1750
BseJI	GATNNNNATC	4 cut(s)	201, 1443, 1557, 1692
BseLI	CCNNNNNNNGG	5 cut(s)	323, 631, 816, 868, 1256
BseMI	GCAATG	1 cut(s)	1261
BseMII	CTCAG	4 cut(s)	302, 380, 777, 978
BseNI	ACTGG	3 cut(s)	807, 1218, 1723
BseRI	GAGGAG	6 cut(s)	61, 1145, 1335, 1416, 1494, 1497
BseXI	GCAGC	2 cut(s)	90, 1550
BsgI	GTGCAG	1 cut(s)	491
BshFI	GGCC	3 cut(s)	68, 213, 905
BshNI	GGYRCC	1 cut(s)	1228
BshVI	ATCGAT	1 cut(s)	1123
BsiSI	CCGG	2 cut(s)	27, 535
BslFI	GGGAC	3 cut(s)	251, 749, 1206
BslI	CCNNNNNNNGG	5 cut(s)	323, 631, 816, 868, 1256
BsmAI	GTCTC	1 cut(s)	1156
BsmFI	GGGAC	3 cut(s)	251, 749, 1206
BsnI	GGCC	3 cut(s)	68, 213, 905
Bsp119I	TTCGAA	1 cut(s)	1036
Bsp1286I	GDGCHC	4 cut(s)	51, 225, 317, 809
Bsp13I	TCCGGA	1 cut(s)	534
BspACI	CCGC	4 cut(s)	351, 625, 1048, 1355
BspANI	GGCC	3 cut(s)	68, 213, 905
BspCNI	CTCAG	4 cut(s)	303, 379, 776, 977
BspDI	ATCGAT	1 cut(s)	1123
BspEI	TCCGGA	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	1561
BspLI	GGNNCC	6 cut(s)	375, 533, 808, 860, 1230, 1576
BspPI	GGATC	3 cut(s)	341, 1569, 1582
BspQI	GCTCTTC	3 cut(s)	213, 711, 1767
BspT104I	TTCGAA	1 cut(s)	1036
BspT107I	GGYRCC	1 cut(s)	1228
BspTI	CTTAAG	1 cut(s)	1433
BsrBI	CCGCTC	1 cut(s)	1048
BsrDI	GCAATG	1 cut(s)	1261
BsrI	ACTGG	3 cut(s)	807, 1218, 1723
BssECI	CCNNGG	9 cut(s)	224, 225, 451, 630, 722, 747, 810, 958, 1224
BssNAI	GTATAC	1 cut(s)	492
BssT1I	CCWWGG	4 cut(s)	451, 722, 810, 958
Bst1107I	GTATAC	1 cut(s)	492
Bst2UI	CCWGG	3 cut(s)	215, 226, 1251
Bst4CI	ACNGT	2 cut(s)	1228, 1520
Bst6I	CTCTTC	8 cut(s)	213, 422, 711, 832, 987, 1094, 1644, 1767
BstAFI	CTTAAG	1 cut(s)	1433
BstBI	TTCGAA	1 cut(s)	1036
BstC8I	GCNNGC	1 cut(s)	1339
BstDEI	CTNAG	6 cut(s)	311, 366, 437, 763, 944, 964
BstDSI	CCRYGG	3 cut(s)	630, 747, 1224
BstF5I	GGATG	5 cut(s)	129, 490, 1327, 1408, 1750
BstMAI	GTCTC	1 cut(s)	1156
BstNI	CCWGG	3 cut(s)	215, 226, 1251
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	3 cut(s)	213, 224, 1249
BstV1I	GCAGC	2 cut(s)	90, 1550
BstV2I	GAAGAC	2 cut(s)	69, 588
BstX2I	RGATCY	1 cut(s)	1574
BstYI	RGATCY	1 cut(s)	1574
BstZ17I	GTATAC	1 cut(s)	492
Bsu15I	ATCGAT	1 cut(s)	1123
BsuI	GTATCC	1 cut(s)	1708
BsuRI	GGCC	3 cut(s)	68, 213, 905
BsuTUI	ATCGAT	1 cut(s)	1123
BtgI	CCRYGG	3 cut(s)	630, 747, 1224
BtgZI	GCGATG	1 cut(s)	1701
BtrI	CACGTC	1 cut(s)	42
BtsCI	GGATG	5 cut(s)	129, 490, 1327, 1408, 1750
BtsI	GCAGTG	2 cut(s)	143, 479
BtsIMutI	CAGTG	3 cut(s)	143, 479, 972
Cac8I	GCNNGC	1 cut(s)	1339
CciI	TCATGA	1 cut(s)	1561
ClaI	ATCGAT	1 cut(s)	1123
CseI	GACGC	1 cut(s)	1146
Csp6I	GTAC	5 cut(s)	652, 775, 852, 997, 1051
CviQI	GTAC	5 cut(s)	652, 775, 852, 997, 1051
DdeI	CTNAG	6 cut(s)	311, 366, 437, 763, 944, 964
DraIII	CACNNNGTG	1 cut(s)	566
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	8 cut(s)	213, 422, 711, 832, 987, 1094, 1644, 1767
EarI	CTCTTC	8 cut(s)	213, 422, 711, 832, 987, 1094, 1644, 1767
EciI	GGCGGA	1 cut(s)	614
Eco130I	CCWWGG	4 cut(s)	451, 722, 810, 958
Eco24I	GRGCYC	4 cut(s)	51, 225, 317, 809
Eco32I	GATATC	2 cut(s)	245, 443
EcoRI	GAATTC	1 cut(s)	1083
EcoRII	CCWGG	3 cut(s)	213, 224, 1249
EcoRV	GATATC	2 cut(s)	245, 443
EcoT14I	CCWWGG	4 cut(s)	451, 722, 810, 958
EcoT38I	GRGCYC	4 cut(s)	51, 225, 317, 809
ErhI	CCWWGG	4 cut(s)	451, 722, 810, 958
FaqI	GGGAC	3 cut(s)	251, 749, 1206
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	2 cut(s)	104, 1539
FokI	GGATG	5 cut(s)	116, 497, 1334, 1415, 1757
FriOI	GRGCYC	4 cut(s)	51, 225, 317, 809
Fsp4HI	GCNGC	2 cut(s)	104, 1539
FspBI	CTAG	5 cut(s)	248, 495, 1110, 1143, 1169
GluI	GCNGC	2 cut(s)	104, 1539
GsuI	CTGGAG	2 cut(s)	1464, 1740
HaeIII	GGCC	3 cut(s)	68, 213, 905
HapII	CCGG	2 cut(s)	27, 535
HgaI	GACGC	1 cut(s)	1146
HincII	GTYRAC	2 cut(s)	955, 1681
HindII	GTYRAC	2 cut(s)	955, 1681
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	5 cut(s)	140, 170, 364, 635, 1181
HpaI	GTTAAC	1 cut(s)	955
HpaII	CCGG	2 cut(s)	27, 535
HphI	GGTGA	2 cut(s)	436, 1271
Hpy166II	GTNNAC	6 cut(s)	492, 955, 999, 1621, 1681, 1771
Hpy188I	TCNGA	5 cut(s)	46, 369, 460, 766, 1186
Hpy8I	GTNNAC	6 cut(s)	492, 955, 999, 1621, 1681, 1771
Hpy99I	CGWCG	2 cut(s)	398, 1162
HpyAV	CCTTC	7 cut(s)	306, 364, 890, 1323, 1404, 1485, 1509
HpyCH4III	ACNGT	2 cut(s)	1228, 1520
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	5 cut(s)	472, 521, 970, 1177, 1598
HpyF3I	CTNAG	6 cut(s)	311, 366, 437, 763, 944, 964
HpySE526I	ACGT	1 cut(s)	41
Kpn2I	TCCGGA	1 cut(s)	534
KspAI	GTTAAC	1 cut(s)	955
LguI	GCTCTTC	3 cut(s)	213, 711, 1767
LmnI	GCTCC	4 cut(s)	373, 537, 812, 1721
Lsp1109I	GCAGC	2 cut(s)	90, 1550
LweI	GCATC	1 cut(s)	979
MaeI	CTAG	5 cut(s)	248, 495, 1110, 1143, 1169
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	1361, 1520
MbiI	CCGCTC	1 cut(s)	1048
MfeI	CAATTG	4 cut(s)	345, 417, 641, 924
MflI	RGATCY	1 cut(s)	1574
MhlI	GDGCHC	4 cut(s)	51, 225, 317, 809
MlsI	TGGCCA	1 cut(s)	213
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	3 cut(s)	358, 629, 1175
MmeI	TCCRAC	1 cut(s)	341
Mox20I	TGGCCA	1 cut(s)	213
MroI	TCCGGA	1 cut(s)	534
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	5 cut(s)	302, 756, 954, 1194, 1434
Msp20I	TGGCCA	1 cut(s)	213
MspCI	CTTAAG	1 cut(s)	1433
MspI	CCGG	2 cut(s)	27, 535
MspR9I	CCNGG	3 cut(s)	215, 226, 1251
MunI	CAATTG	4 cut(s)	345, 417, 641, 924
MvaI	CCWGG	3 cut(s)	215, 226, 1251
NlaIV	GGNNCC	6 cut(s)	375, 533, 808, 860, 1230, 1576
NmuCI	GTSAC	2 cut(s)	1361, 1520
NspI	RCATGY	1 cut(s)	470
NspV	TTCGAA	1 cut(s)	1036
PagI	TCATGA	1 cut(s)	1561
PasI	CCCWGGG	1 cut(s)	225
PciI	ACATGT	1 cut(s)	466
PciSI	GCTCTTC	3 cut(s)	213, 711, 1767
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	140, 170
PkrI	GCNGC	2 cut(s)	105, 1540
PleI	GAGTC	3 cut(s)	358, 629, 1175
PpsI	GAGTC	3 cut(s)	358, 629, 1175
PscI	ACATGT	1 cut(s)	466
Psp6I	CCWGG	3 cut(s)	213, 224, 1249
PspGI	CCWGG	3 cut(s)	213, 224, 1249
PspN4I	GGNNCC	6 cut(s)	375, 533, 808, 860, 1230, 1576
PsuI	RGATCY	1 cut(s)	1574
RsaI	GTAC	5 cut(s)	653, 776, 853, 998, 1052
RsaNI	GTAC	5 cut(s)	652, 775, 852, 997, 1051
SapI	GCTCTTC	3 cut(s)	213, 711, 1767
SaqAI	TTAA	5 cut(s)	302, 756, 954, 1194, 1434
SatI	GCNGC	2 cut(s)	104, 1539
SchI	GAGTC	3 cut(s)	358, 629, 1175
ScrFI	CCNGG	3 cut(s)	215, 226, 1251
SduI	GDGCHC	4 cut(s)	51, 225, 317, 809
SfaNI	GCATC	1 cut(s)	979
SfuI	TTCGAA	1 cut(s)	1036
SmlI	CTYRAG	3 cut(s)	1385, 1433, 1466
SmoI	CTYRAG	3 cut(s)	1385, 1433, 1466
SpeI	ACTAGT	2 cut(s)	494, 1168
SsiI	CCGC	4 cut(s)	351, 625, 1048, 1355
SspI	AATATT	1 cut(s)	1549
SspMI	CTAG	5 cut(s)	248, 495, 1110, 1143, 1169
StyD4I	CCNGG	3 cut(s)	213, 224, 1249
StyI	CCWWGG	4 cut(s)	451, 722, 810, 958
TaaI	ACNGT	2 cut(s)	1228, 1520
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	6 cut(s)	5, 59, 835, 1036, 1123, 1160
TatI	WGTACW	2 cut(s)	774, 996
TfiI	GAWTC	2 cut(s)	140, 170
Tru1I	TTAA	5 cut(s)	302, 756, 954, 1194, 1434
Tru9I	TTAA	5 cut(s)	302, 756, 954, 1194, 1434
TscAI	CASTG	3 cut(s)	150, 479, 972
TseFI	GTSAC	2 cut(s)	1361, 1520
TseI	GCWGC	2 cut(s)	103, 1538
Tsp45I	GTSAC	2 cut(s)	1361, 1520
TspGWI	ACGGA	2 cut(s)	647, 736
TspRI	CASTG	3 cut(s)	150, 479, 972
Vha464I	CTTAAG	1 cut(s)	1433
XapI	RAATTY	5 cut(s)	55, 181, 729, 1083, 1406
XceI	RCATGY	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	491
XspI	CTAG	5 cut(s)	248, 495, 1110, 1143, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.