RLG00000028444
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012646
Physical Location & Seq
Reverse (-)
22932266 .. 22932739
474 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028444

Sequence Viewer

Length: 474 bp
ATGTCGATTTCATCTTGTTCTTATTCCGGTGGGTTTCTCACATTCGAGCCCTCAAATTCGATGGTGGCCTCCTCGTCTTCTTCTGGGTCTGTGATGCCAACGTTGCCGTTAGGTATGAAGATGTCATTCATCCCCACCGATTCACAACTCATCAGGTTTATTCTCCACGATTCTGCCCCGAATTTTATTATTACTGATTGCGATCTATTTGGCCAGGAAGAGCCTTGGGAAATCTGGGACAGATATTTAGGGTTTCTAAACCAATACAACCCAGATGAACTCTACTTCTTCATGCCTTCGCTGAAGAAATTGAGCCCTAATGGTGGTTCAAGGATCAGCCGAACAATTGGCGGTGGTAGTTGGACTCAGAAGGAGCCAATCAAGTTTGTGTGTGACGATGACGACGAGGGCAGATCAATTGGGGTGAAGAGAAAGCTTAGATATCACAACCAAGGGTCAGATCAACATGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

158

Amino Acids

17.58

Weight (kDa)

5.28

Isoelectric Point (pI)

59.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 41 - 152 6e-13 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 351
AclI AACGTT 1 cut(s) 101
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 2 cut(s) 55, 181
AcuI CTGAAG 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 1 cut(s) 330
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 1 cut(s) 436
AluI AGCT 1 cut(s) 436
AlwI GGATC 1 cut(s) 341
AoxI GGCC 2 cut(s) 66, 211
ApoI RAATTY 2 cut(s) 55, 181
AsuHPI GGTGA 1 cut(s) 436
BalI TGGCCA 1 cut(s) 213
BanII GRGCYC 2 cut(s) 51, 317
BbsI GAAGAC 1 cut(s) 69
BccI CCATC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 224, 451
BsaWI WCCGGW 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 2 cut(s) 224, 451
BseGI GGATG 1 cut(s) 129
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 61
BshFI GGCC 2 cut(s) 68, 213
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 323
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 2 cut(s) 68, 213
Bsp1286I GDGCHC 2 cut(s) 51, 317
Bsp143I GATC 4 cut(s) 202, 333, 413, 460
BspACI CCGC 1 cut(s) 351
BspANI GGCC 2 cut(s) 68, 213
BspCNI CTCAG 1 cut(s) 379
BspLI GGNNCC 1 cut(s) 375
BspPI GGATC 1 cut(s) 341
BspQI GCTCTTC 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 224, 451
BssMI GATC 4 cut(s) 202, 333, 413, 460
BssT1I CCWWGG 2 cut(s) 224, 451
Bst2UI CCWGG 1 cut(s) 215
Bst6I CTCTTC 2 cut(s) 213, 422
BstDEI CTNAG 2 cut(s) 366, 437
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 4 cut(s) 205, 336, 416, 463
BstMBI GATC 4 cut(s) 202, 333, 413, 460
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 213
BstV2I GAAGAC 1 cut(s) 69
BsuRI GGCC 2 cut(s) 68, 213
BtsCI GGATG 1 cut(s) 129
CviAII CATG 2 cut(s) 292, 467
CviJI RGCY 8 cut(s) 49, 68, 213, 223, 315, 339, 376, 436
CviKI_1 RGCY 8 cut(s) 49, 68, 213, 223, 315, 339, 376, 436
DdeI CTNAG 2 cut(s) 366, 437
DpnI GATC 4 cut(s) 204, 335, 415, 462
DpnII GATC 4 cut(s) 202, 333, 413, 460
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 2 cut(s) 213, 422
EarI CTCTTC 2 cut(s) 213, 422
Eco130I CCWWGG 2 cut(s) 224, 451
Eco24I GRGCYC 2 cut(s) 51, 317
Eco32I GATATC 1 cut(s) 443
Eco57I CTGAAG 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 213
EcoRV GATATC 1 cut(s) 443
EcoT14I CCWWGG 2 cut(s) 224, 451
EcoT38I GRGCYC 2 cut(s) 51, 317
ErhI CCWWGG 2 cut(s) 224, 451
FaeI CATG 2 cut(s) 295, 470
FaiI YATR 3 cut(s) 116, 293, 468
FaqI GGGAC 1 cut(s) 251
FatI CATG 2 cut(s) 291, 466
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 2 cut(s) 51, 317
HaeIII GGCC 2 cut(s) 68, 213
HapII CCGG 1 cut(s) 27
Hin1II CATG 2 cut(s) 295, 470
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 3 cut(s) 140, 170, 364
HpaII CCGG 1 cut(s) 27
HphI GGTGA 1 cut(s) 436
Hpy188I TCNGA 2 cut(s) 369, 460
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 2 cut(s) 306, 364
HpyCH4IV ACGT 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 2 cut(s) 366, 437
HpySE526I ACGT 1 cut(s) 101
Hsp92II CATG 2 cut(s) 295, 470
Kzo9I GATC 4 cut(s) 202, 333, 413, 460
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 7 cut(s) 40, 69, 139, 200, 220, 227, 285
LweI GCATC 1 cut(s) 84
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 392
MalI GATC 4 cut(s) 204, 335, 415, 462
MboI GATC 4 cut(s) 202, 333, 413, 460
MboII GAAGA 7 cut(s) 69, 72, 130, 230, 280, 316, 439
MfeI CAATTG 2 cut(s) 345, 417
MhlI GDGCHC 2 cut(s) 51, 317
MlsI TGGCCA 1 cut(s) 213
MluCI AATT 5 cut(s) 55, 181, 308, 345, 417
MluNI TGGCCA 1 cut(s) 213
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 4 cut(s) 61, 79, 82, 400
Mox20I TGGCCA 1 cut(s) 213
MscI TGGCCA 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 213
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 215
MunI CAATTG 2 cut(s) 345, 417
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 4 cut(s) 202, 333, 413, 460
NlaIII CATG 2 cut(s) 295, 470
NlaIV GGNNCC 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 392
NspI RCATGY 1 cut(s) 470
PciSI GCTCTTC 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PfeI GAWTC 2 cut(s) 140, 170
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Psp1406I AACGTT 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 375
SapI GCTCTTC 1 cut(s) 213
Sau3AI GATC 4 cut(s) 202, 333, 413, 460
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 2 cut(s) 51, 317
SetI ASST 4 cut(s) 104, 115, 158, 438
SfaNI GCATC 1 cut(s) 84
Sse9I AATT 5 cut(s) 55, 181, 308, 345, 417
SsiI CCGC 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 2 cut(s) 224, 451
TaiI ACGT 1 cut(s) 104
TaqI TCGA 3 cut(s) 5, 45, 59
TasI AATT 5 cut(s) 55, 181, 308, 345, 417
TfiI GAWTC 2 cut(s) 140, 170
TseFI GTSAC 1 cut(s) 392
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 4 cut(s) 118, 131, 280, 291
XapI RAATTY 2 cut(s) 55, 181
XceI RCATGY 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.