Rorug06G0023200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012646
Physical Location & Seq
Reverse (-)
2882348 .. 2882635
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0023200.1

Sequence Viewer

Length: 288 bp
ATGTCTAGATCACTAGACCTTCTTCATGCTCCTCCAATAGTCGCGGCAGAGGGATCGGATCATATGAGCCACACAAGGCTTCTAATGGACCAGCACCAAGCACTCTCACTGTCCCTTGGCTCACAGATGCTTCTACCTCCTAGTTCTCATTCTGCTCATTATGTGACCGATGACTATTCGTTCATGGGGAATGCGCTTGCTTCGTCTTCAAGCTCACTGAATCAGCAGTCTTTGGCAGCAGTCATTGGGAATTCGAGATATCTAAAGCCAGCTAAGTCACTGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.16

Weight (kDa)

6.56

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 286
AccII CGCG 1 cut(s) 44
AciI CCGC 1 cut(s) 44
AclWI GGATC 2 cut(s) 61, 66
AcsI RAATTY 1 cut(s) 250
AgsI TTSAA 1 cut(s) 210
AluBI AGCT 2 cut(s) 213, 272
AluI AGCT 2 cut(s) 213, 272
AlwI GGATC 2 cut(s) 61, 66
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 250
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 88
AvaII GGWCC 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 248
BcgI CGANNNNNNTGC 2 cut(s) 36, 70
BfaI CTAG 3 cut(s) 6, 14, 141
BisI GCNGC 2 cut(s) 45, 237
BlsI GCNGC 2 cut(s) 46, 238
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 88
BmsI GCATC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 196
Bsp143I GATC 3 cut(s) 8, 53, 58
BspACI CCGC 1 cut(s) 44
BspFNI CGCG 1 cut(s) 44
BspPI GGATC 2 cut(s) 61, 66
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 3 cut(s) 8, 53, 58
BssT1I CCWWGG 1 cut(s) 115
Bst4CI ACNGT 2 cut(s) 111, 282
BstC8I GCNNGC 2 cut(s) 198, 270
BstDEI CTNAG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 3 cut(s) 11, 56, 61
BstMBI GATC 3 cut(s) 8, 53, 58
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 248
BstV2I GAAGAC 1 cut(s) 198
BtsIMutI CAGTG 3 cut(s) 107, 215, 278
Cac8I GCNNGC 2 cut(s) 198, 270
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 88
CviAII CATG 2 cut(s) 26, 184
CviJI RGCY 6 cut(s) 69, 79, 120, 213, 268, 272
CviKI_1 RGCY 6 cut(s) 69, 79, 120, 213, 268, 272
DdeI CTNAG 1 cut(s) 273
DpnI GATC 3 cut(s) 10, 55, 60
DpnII GATC 3 cut(s) 8, 53, 58
Eco130I CCWWGG 1 cut(s) 115
Eco32I GATATC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 88
EcoRI GAATTC 1 cut(s) 250
EcoRV GATATC 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 2 cut(s) 29, 187
FaiI YATR 6 cut(s) 27, 63, 65, 162, 185, 286
FaqI GGGAC 1 cut(s) 97
FatI CATG 2 cut(s) 25, 183
FauNDI CATATG 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 45, 237
Fsp4HI GCNGC 2 cut(s) 45, 237
FspBI CTAG 3 cut(s) 6, 14, 141
GlaI GCGC 1 cut(s) 195
GluI GCNGC 2 cut(s) 45, 237
HhaI GCGC 1 cut(s) 196
Hin1II CATG 2 cut(s) 29, 187
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HinfI GANTC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 6, 255
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 111, 282
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 2 cut(s) 29, 187
HspAI GCGC 1 cut(s) 194
Kzo9I GATC 3 cut(s) 8, 53, 58
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 2 cut(s) 104, 282
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 1 cut(s) 117
MaeI CTAG 3 cut(s) 6, 14, 141
MaeIII GTNAC 2 cut(s) 163, 276
MalI GATC 3 cut(s) 10, 55, 60
MboI GATC 3 cut(s) 8, 53, 58
MboII GAAGA 2 cut(s) 14, 198
MluCI AATT 1 cut(s) 250
MnlI CCTC 3 cut(s) 42, 43, 147
Mva1269I GAATGC 1 cut(s) 196
MvnI CGCG 1 cut(s) 44
NdeI CATATG 1 cut(s) 63
NdeII GATC 3 cut(s) 8, 53, 58
NlaIII CATG 2 cut(s) 29, 187
NmuCI GTSAC 2 cut(s) 163, 276
PctI GAATGC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 46, 238
PsiI TTATAA 1 cut(s) 286
PspPI GGNCC 1 cut(s) 88
SatI GCNGC 2 cut(s) 45, 237
Sau3AI GATC 3 cut(s) 8, 53, 58
Sau96I GGNCC 1 cut(s) 88
SetI ASST 4 cut(s) 21, 139, 215, 274
SfaNI GCATC 1 cut(s) 117
SinI GGWCC 1 cut(s) 88
Sse9I AATT 1 cut(s) 250
SsiI CCGC 1 cut(s) 44
SspMI CTAG 3 cut(s) 6, 14, 141
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 2 cut(s) 111, 282
TaqI TCGA 1 cut(s) 254
TaqII GACCGA 1 cut(s) 182
TasI AATT 1 cut(s) 250
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 220
TscAI CASTG 3 cut(s) 114, 222, 285
TseFI GTSAC 2 cut(s) 163, 276
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 2 cut(s) 163, 276
TspDTI ATGAA 2 cut(s) 14, 172
TspRI CASTG 3 cut(s) 114, 222, 285
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 1 cut(s) 250
XbaI TCTAGA 1 cut(s) 5
XspI CTAG 3 cut(s) 6, 14, 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.