Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0012646

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG227500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1794 bp

ATGTCGATTTCATCTTCTTCTTATTCCGGTGGGTTTCTCACGTCCGAGCCCTCAAATTCGATGGTGGCCTCCTCGTCTTCTTCTGGGTCTGTGATGCCAACGCTGCCGTTAGGTATGAAGATGGCATTCATCCCCACCGATTCACTGCTCATCAGGTTTATTCTCCACGATTCTGCCCCGAATTTTATTATTACTGATTGCGATCTATTTGGCCAGGAAGAGCCCTGGGAAATCTGGGACAGATATCTAGGGTTTCTAAACCAATACAACCCAGATGAACTTTACTTCTTCATGCCTTCGTTAAAGAAACTGAGCCCTAATGGTGGTTCAAGGATCAACCGAACAATTGGCGGTGGTAGTTGGACTCAGAAGGAGCCAATCAAGTTTGTGTGCGACGATGAGGACGAGGGCAGATCAATTGGGGTGAAGAGAAAGCTTAGATATCACAACCAAGGGTCAGATCAACATGTGCAGTGGTGTTTGGATGAGTATACTAGTGTTGAGGTTGCTAATTCATGCGCAATTTTTCGGCTCCGGAAAAACGAGCGACAATACAAATCACTATGTGGTATTTGTGTGGAAGACTTCATTCAGCCTCTACCATTAGGTATGAAGATTTTATTCCGCCCCACGGACTCACAATTGATTAGGTACTTTCTTGGTTTTGATATTGCCCCAGATTTTATTGTTTATGATTGTGATTTGTTTGGTCAGGAAGAGCCTTGGGAAATTTGGGACAGGTATTCCGTGGTTTTTAACAACTCAGACCTTTTGTACTTTTTCACATCGTCTATGAAGAAACTGGGCTCTAAGGGGAGGGTTTGTAATTTTGGTCGAAGAGTTGGGTCTGGTACATGGAACCAAAAGGAGGCTGCCAAATTGGTGTATGATGATGAAGGCGAGGCCGATCAAGAAAGAAAGCCAATTGGGAGAAAGAGGAAACTTAGATATGTTAACCAAGGCTCTGTGCATCATGGGGAGTGGTATTTGGAAGAGTACACAAGCCTTGTTGATGAGGGTGCGATTTTGCTTCTTCGAAAAAACGAGCAGTACAAAGCACCAGCTTCATCAATGTCGTCAGGAATTCCAAGTGAAAAGAAGAGGAAACACAGAGAAATTGATCGATTGGAGGAGAAGAAGCCTAGAAAGAAAAAAGCGTCGACGAGACAACTAGTAATGCAGGACTCGGATTTACTTAATAGGCAAAGCCAAACTACTACCAGTCCCACAGTGCCTATTCAACAACGAGAACCTGGCAATGGTGATGATAATTTCGTGTTCTTCAAGGGTATTGATATTGGAACATGGGAATTTCCTTCTCTGGATGATTTTGTCATGGCTTGCCCTCCTCCACTTACGGAATGTGATCACGAAGCATTAGCAACCCTTGAGTTTCCTTCTCTGGATGAATTTGTCATGGCTTGTTCTCCTCCACTTACGGATTGCGATCAAGAAGCATTAGCTACCCTTGAGTTTCCTTCTCCAGATGACTTGGCTTCTCCTTCTCCTCCTCTTGAGGACTGTGACCAACAAGTAATAGCAGCAGTCAATATTGATGATAATCATGATCTCACGGGATCCTGTAATGATGATGATATTGCAACATGGAGTTTTCCTATTGTGGACTATTCATTGACTTCTCTTCTTCAAGGAAAATGTGATGAACAAGCATTAGCATTAGTCAACAGCGATGATGATCTACATTTCGTGAAAGAGGATACTGGAGCATGGTGTCCTGCTTTTGTGGATGATTTCTTGATGGCTCTTCTTGTGGACTGTGATGAACAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

597

Amino Acids

67.46

Weight (kDa)

4.63

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	41 - 165	1.2e-14	No apical meristem (NAM) protein
NAM	PF02365	207 - 334	5.1e-13	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012646)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12150
rosa_chinensis	RchiOBHm_Chr1g0350911
rosa_laevigata	RLG00000028443 RLG00000028444
rosa_multiflora	Rmu_sc0014584.1_g000008 Rmu_sc0014584.1_g000010
rosa_roxburghii	Rroxscaffold_4G00304380 Rroxscaffold_4G00304420
rosa_rugosa	Rorug01G0215100 Rorug06G0023100 Rorug06G0023200
rosa_samantha	Rh1AG229500 Rh1AG229700 Rh1AG229800 Rh1BG075100 Rh1BG199500 Rh1BG199700 Rh1DG227500
rosa_wichuraiana	Rw1G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	520
AccI	GTMKAC	2 cut(s)	491, 1160
AccIII	TCCGGA	1 cut(s)	534
AciI	CCGC	2 cut(s)	351, 625
AclWI	GGATC	3 cut(s)	341, 1572, 1585
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	6 cut(s)	55, 181, 729, 1083, 1310, 1409
AdeI	CACNNNGTG	1 cut(s)	566
AfaI	GTAC	5 cut(s)	653, 776, 853, 998, 1052
AfiI	CCNNNNNNNGG	4 cut(s)	323, 631, 868, 1259
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	4 cut(s)	330, 1241, 1285, 1649
AhlI	ACTAGT	2 cut(s)	494, 1171
AjiI	CACGTC	1 cut(s)	42
AjnI	CCWGG	3 cut(s)	213, 224, 1252
AluBI	AGCT	3 cut(s)	436, 1064, 1463
AluI	AGCT	3 cut(s)	436, 1064, 1463
Alw26I	GTCTC	1 cut(s)	1159
AlwI	GGATC	3 cut(s)	341, 1572, 1585
Aor13HI	TCCGGA	1 cut(s)	534
AoxI	GGCC	3 cut(s)	66, 211, 903
ApeKI	GCWGC	3 cut(s)	103, 872, 1541
ApoI	RAATTY	6 cut(s)	55, 181, 729, 1083, 1310, 1409
AspLEI	GCGC	1 cut(s)	521
AsuHPI	GGTGA	2 cut(s)	436, 1274
AsuII	TTCGAA	1 cut(s)	1036
BalI	TGGCCA	1 cut(s)	213
BamHI	GGATCC	1 cut(s)	1577
BanII	GRGCYC	4 cut(s)	51, 225, 317, 809
BbsI	GAAGAC	2 cut(s)	69, 588
BbvI	GCAGC	3 cut(s)	90, 859, 1553
BccI	CCATC	3 cut(s)	55, 115, 1753
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	3 cut(s)	215, 226, 1254
BciVI	GTATCC	1 cut(s)	1711
BclI	TGATCA	1 cut(s)	1366
BcoDI	GTCTC	1 cut(s)	1159
BcuI	ACTAGT	2 cut(s)	494, 1171
BfaI	CTAG	4 cut(s)	248, 495, 1143, 1172
BfuI	GTATCC	1 cut(s)	1711
BisI	GCNGC	3 cut(s)	104, 873, 1542
BlsI	GCNGC	3 cut(s)	105, 874, 1543
Bme1390I	CCNGG	3 cut(s)	215, 226, 1254
BmgBI	CACGTC	1 cut(s)	42
BmiI	GGNNCC	4 cut(s)	375, 533, 860, 1579
BmrFI	CCNGG	3 cut(s)	215, 226, 1254
BmrI	ACTGGG	1 cut(s)	812
BmsI	GCATC	2 cut(s)	84, 979
BmuI	ACTGGG	1 cut(s)	812
BpiI	GAAGAC	2 cut(s)	69, 588
BpmI	CTGGAG	2 cut(s)	1467, 1743
Bpu14I	TTCGAA	1 cut(s)	1036
BpuEI	CTTGAG	3 cut(s)	1409, 1490, 1535
Bsa29I	ATCGAT	1 cut(s)	1123
BsaBI	GATNNNNATC	4 cut(s)	201, 1446, 1560, 1695
BsaJI	CCNNGG	7 cut(s)	224, 225, 451, 630, 722, 747, 958
BsaWI	WCCGGW	2 cut(s)	26, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	808, 838
Bsc4I	CCNNNNNNNGG	4 cut(s)	323, 631, 868, 1259
Bse1I	ACTGG	3 cut(s)	807, 1221, 1726
Bse3DI	GCAATG	1 cut(s)	1264
Bse8I	GATNNNNATC	4 cut(s)	201, 1446, 1560, 1695
BseAI	TCCGGA	1 cut(s)	534
BseBI	CCWGG	3 cut(s)	215, 226, 1254
BseCI	ATCGAT	1 cut(s)	1123
BseDI	CCNNGG	7 cut(s)	224, 225, 451, 630, 722, 747, 958
BseGI	GGATG	5 cut(s)	129, 490, 1330, 1411, 1753
BseJI	GATNNNNATC	4 cut(s)	201, 1446, 1560, 1695
BseLI	CCNNNNNNNGG	4 cut(s)	323, 631, 868, 1259
BseMI	GCAATG	1 cut(s)	1264
BseMII	CTCAG	3 cut(s)	302, 380, 777
BseNI	ACTGG	3 cut(s)	807, 1221, 1726
BseRI	GAGGAG	6 cut(s)	61, 1145, 1338, 1419, 1497, 1500
BseXI	GCAGC	3 cut(s)	90, 859, 1553
BsgI	GTGCAG	1 cut(s)	491
BshFI	GGCC	3 cut(s)	68, 213, 905
BshVI	ATCGAT	1 cut(s)	1123
BsiSI	CCGG	2 cut(s)	27, 535
BslFI	GGGAC	3 cut(s)	251, 749, 1209
BslI	CCNNNNNNNGG	4 cut(s)	323, 631, 868, 1259
BsmAI	GTCTC	1 cut(s)	1159
BsmFI	GGGAC	3 cut(s)	251, 749, 1209
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	3 cut(s)	68, 213, 905
Bsp119I	TTCGAA	1 cut(s)	1036
Bsp1286I	GDGCHC	4 cut(s)	51, 225, 317, 809
Bsp13I	TCCGGA	1 cut(s)	534
BspACI	CCGC	2 cut(s)	351, 625
BspANI	GGCC	3 cut(s)	68, 213, 905
BspCNI	CTCAG	3 cut(s)	303, 379, 776
BspDI	ATCGAT	1 cut(s)	1123
BspEI	TCCGGA	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	1564
BspLI	GGNNCC	4 cut(s)	375, 533, 860, 1579
BspPI	GGATC	3 cut(s)	341, 1572, 1585
BspQI	GCTCTTC	3 cut(s)	213, 711, 1770
BspT104I	TTCGAA	1 cut(s)	1036
BsrDI	GCAATG	1 cut(s)	1264
BsrI	ACTGG	3 cut(s)	807, 1221, 1726
BssECI	CCNNGG	7 cut(s)	224, 225, 451, 630, 722, 747, 958
BssNAI	GTATAC	1 cut(s)	492
BssT1I	CCWWGG	3 cut(s)	451, 722, 958
Bst1107I	GTATAC	1 cut(s)	492
Bst2UI	CCWGG	3 cut(s)	215, 226, 1254
Bst4CI	ACNGT	3 cut(s)	1231, 1523, 1778
Bst6I	CTCTTC	8 cut(s)	213, 422, 711, 832, 987, 1094, 1647, 1770
BstBI	TTCGAA	1 cut(s)	1036
BstC8I	GCNNGC	1 cut(s)	1342
BstDEI	CTNAG	6 cut(s)	311, 366, 437, 763, 810, 944
BstDSI	CCRYGG	2 cut(s)	630, 747
BstF5I	GGATG	5 cut(s)	129, 490, 1330, 1411, 1753
BstHHI	GCGC	1 cut(s)	521
BstMAI	GTCTC	1 cut(s)	1159
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNI	CCWGG	3 cut(s)	215, 226, 1254
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	3 cut(s)	213, 224, 1252
BstV1I	GCAGC	3 cut(s)	90, 859, 1553
BstV2I	GAAGAC	2 cut(s)	69, 588
BstX2I	RGATCY	1 cut(s)	1577
BstYI	RGATCY	1 cut(s)	1577
BstZ17I	GTATAC	1 cut(s)	492
Bsu15I	ATCGAT	1 cut(s)	1123
BsuI	GTATCC	1 cut(s)	1711
BsuRI	GGCC	3 cut(s)	68, 213, 905
BsuTUI	ATCGAT	1 cut(s)	1123
BtgI	CCRYGG	2 cut(s)	630, 747
BtgZI	GCGATG	1 cut(s)	1704
BtrI	CACGTC	1 cut(s)	42
BtsCI	GGATG	5 cut(s)	129, 490, 1330, 1411, 1753
BtsI	GCAGTG	2 cut(s)	143, 479
BtsIMutI	CAGTG	3 cut(s)	143, 479, 1236
Cac8I	GCNNGC	1 cut(s)	1342
CciI	TCATGA	1 cut(s)	1564
CfoI	GCGC	1 cut(s)	521
ClaI	ATCGAT	1 cut(s)	1123
CseI	GACGC	1 cut(s)	1146
Csp6I	GTAC	5 cut(s)	652, 775, 852, 997, 1051
CviQI	GTAC	5 cut(s)	652, 775, 852, 997, 1051
DdeI	CTNAG	6 cut(s)	311, 366, 437, 763, 810, 944
DraIII	CACNNNGTG	1 cut(s)	566
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	8 cut(s)	213, 422, 711, 832, 987, 1094, 1647, 1770
EarI	CTCTTC	8 cut(s)	213, 422, 711, 832, 987, 1094, 1647, 1770
EciI	GGCGGA	1 cut(s)	614
Eco130I	CCWWGG	3 cut(s)	451, 722, 958
Eco24I	GRGCYC	4 cut(s)	51, 225, 317, 809
Eco32I	GATATC	2 cut(s)	245, 443
EcoRI	GAATTC	1 cut(s)	1083
EcoRII	CCWGG	3 cut(s)	213, 224, 1252
EcoRV	GATATC	2 cut(s)	245, 443
EcoT14I	CCWWGG	3 cut(s)	451, 722, 958
EcoT38I	GRGCYC	4 cut(s)	51, 225, 317, 809
ErhI	CCWWGG	3 cut(s)	451, 722, 958
FaqI	GGGAC	3 cut(s)	251, 749, 1209
FbaI	TGATCA	1 cut(s)	1366
FblI	GTMKAC	2 cut(s)	491, 1160
Fnu4HI	GCNGC	3 cut(s)	104, 873, 1542
FokI	GGATG	5 cut(s)	116, 497, 1337, 1418, 1760
FriOI	GRGCYC	4 cut(s)	51, 225, 317, 809
Fsp4HI	GCNGC	3 cut(s)	104, 873, 1542
FspBI	CTAG	4 cut(s)	248, 495, 1143, 1172
FspI	TGCGCA	1 cut(s)	520
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	3 cut(s)	104, 873, 1542
GsuI	CTGGAG	2 cut(s)	1467, 1743
HaeIII	GGCC	3 cut(s)	68, 213, 905
HapII	CCGG	2 cut(s)	27, 535
HgaI	GACGC	1 cut(s)	1146
HhaI	GCGC	1 cut(s)	521
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HincII	GTYRAC	3 cut(s)	955, 1161, 1684
HindII	GTYRAC	3 cut(s)	955, 1161, 1684
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	5 cut(s)	140, 170, 364, 635, 1184
HpaI	GTTAAC	1 cut(s)	955
HpaII	CCGG	2 cut(s)	27, 535
HphI	GGTGA	2 cut(s)	436, 1274
Hpy166II	GTNNAC	7 cut(s)	492, 955, 999, 1161, 1624, 1684, 1774
Hpy188I	TCNGA	5 cut(s)	46, 369, 460, 766, 1189
Hpy8I	GTNNAC	7 cut(s)	492, 955, 999, 1161, 1624, 1684, 1774
Hpy99I	CGWCG	3 cut(s)	398, 1162, 1165
HpyAV	CCTTC	7 cut(s)	306, 364, 890, 1326, 1407, 1488, 1512
HpyCH4III	ACNGT	3 cut(s)	1231, 1523, 1778
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	4 cut(s)	472, 970, 1180, 1601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	6 cut(s)	311, 366, 437, 763, 810, 944
HpySE526I	ACGT	1 cut(s)	41
HspAI	GCGC	1 cut(s)	519
Kpn2I	TCCGGA	1 cut(s)	534
Ksp22I	TGATCA	1 cut(s)	1366
KspAI	GTTAAC	1 cut(s)	955
LguI	GCTCTTC	3 cut(s)	213, 711, 1770
LmnI	GCTCC	3 cut(s)	373, 537, 1724
Lsp1109I	GCAGC	3 cut(s)	90, 859, 1553
LweI	GCATC	2 cut(s)	84, 979
MaeI	CTAG	4 cut(s)	248, 495, 1143, 1172
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	1523
MfeI	CAATTG	4 cut(s)	345, 417, 641, 924
MflI	RGATCY	1 cut(s)	1577
MhlI	GDGCHC	4 cut(s)	51, 225, 317, 809
MlsI	TGGCCA	1 cut(s)	213
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	3 cut(s)	358, 629, 1178
MmeI	TCCRAC	1 cut(s)	341
Mox20I	TGGCCA	1 cut(s)	213
MroI	TCCGGA	1 cut(s)	534
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	4 cut(s)	302, 756, 954, 1197
Msp20I	TGGCCA	1 cut(s)	213
MspI	CCGG	2 cut(s)	27, 535
MspR9I	CCNGG	3 cut(s)	215, 226, 1254
MunI	CAATTG	4 cut(s)	345, 417, 641, 924
Mva1269I	GAATGC	1 cut(s)	125
MvaI	CCWGG	3 cut(s)	215, 226, 1254
MwoI	GCNNNNNNNGC	1 cut(s)	103
NlaIV	GGNNCC	4 cut(s)	375, 533, 860, 1579
NmuCI	GTSAC	1 cut(s)	1523
NsbI	TGCGCA	1 cut(s)	520
NspI	RCATGY	1 cut(s)	470
NspV	TTCGAA	1 cut(s)	1036
PagI	TCATGA	1 cut(s)	1564
PasI	CCCWGGG	1 cut(s)	225
PciI	ACATGT	1 cut(s)	466
PciSI	GCTCTTC	3 cut(s)	213, 711, 1770
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PctI	GAATGC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	140, 170
PkrI	GCNGC	3 cut(s)	105, 874, 1543
PleI	GAGTC	3 cut(s)	358, 629, 1178
PpsI	GAGTC	3 cut(s)	358, 629, 1178
PscI	ACATGT	1 cut(s)	466
Psp6I	CCWGG	3 cut(s)	213, 224, 1252
PspGI	CCWGG	3 cut(s)	213, 224, 1252
PspN4I	GGNNCC	4 cut(s)	375, 533, 860, 1579
PsuI	RGATCY	1 cut(s)	1577
RsaI	GTAC	5 cut(s)	653, 776, 853, 998, 1052
RsaNI	GTAC	5 cut(s)	652, 775, 852, 997, 1051
SalI	GTCGAC	1 cut(s)	1159
SapI	GCTCTTC	3 cut(s)	213, 711, 1770
SaqAI	TTAA	4 cut(s)	302, 756, 954, 1197
SatI	GCNGC	3 cut(s)	104, 873, 1542
SchI	GAGTC	3 cut(s)	358, 629, 1178
ScrFI	CCNGG	3 cut(s)	215, 226, 1254
SduI	GDGCHC	4 cut(s)	51, 225, 317, 809
SfaNI	GCATC	2 cut(s)	84, 979
SfuI	TTCGAA	1 cut(s)	1036
SgrDI	CGTCGACG	1 cut(s)	1159
SmlI	CTYRAG	3 cut(s)	1388, 1469, 1514
SmoI	CTYRAG	3 cut(s)	1388, 1469, 1514
SpeI	ACTAGT	2 cut(s)	494, 1171
SsiI	CCGC	2 cut(s)	351, 625
SspI	AATATT	1 cut(s)	1552
SspMI	CTAG	4 cut(s)	248, 495, 1143, 1172
StyD4I	CCNGG	3 cut(s)	213, 224, 1252
StyI	CCWWGG	3 cut(s)	451, 722, 958
TaaI	ACNGT	3 cut(s)	1231, 1523, 1778
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	6 cut(s)	5, 59, 835, 1036, 1123, 1160
TatI	WGTACW	3 cut(s)	774, 996, 1050
TfiI	GAWTC	2 cut(s)	140, 170
Tru1I	TTAA	4 cut(s)	302, 756, 954, 1197
Tru9I	TTAA	4 cut(s)	302, 756, 954, 1197
TscAI	CASTG	3 cut(s)	150, 479, 1236
TseFI	GTSAC	1 cut(s)	1523
TseI	GCWGC	3 cut(s)	103, 872, 1541
Tsp45I	GTSAC	1 cut(s)	1523
TspGWI	ACGGA	4 cut(s)	647, 736, 1373, 1454
TspRI	CASTG	3 cut(s)	150, 479, 1236
XapI	RAATTY	6 cut(s)	55, 181, 729, 1083, 1310, 1409
XceI	RCATGY	1 cut(s)	470
XmiI	GTMKAC	2 cut(s)	491, 1160
XspI	CTAG	4 cut(s)	248, 495, 1143, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.