Rh1BG075100
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0012646
Physical Location & Seq
Forward (+)
11620213 .. 11621679
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG075100.1

Sequence Viewer

Length: 1242 bp
ATGTCGATTTCATCTTCATACCCAACGCTGCCCCCCTCGACTCCGCCACCGATTCCCTCAACTCGCCCGAGTTCGCCTTCTCCGACTCAGCAACCGGCGCTTCCTTCACCACCGAATCGGAACTCTCCCCGAATCATGTCGATTTCATCTTCATACCCAACGGCACTGCCGTTAGGTATGAAGATGTCGTTCATCTCCACCGATTCACAACTCATCAGGTTTATTCTCCACGATTCTGCCCCGAATTTTATTATTACTGATTGCGATCTATTTGGCCAGGAAGAGCCCTGGGAAATCTGGGACAGATATCTAGGGTTTCTAAATCAATACAACCCAGATGAACTCTACTTCTTCATGCCTTCGCTGAAGAAATTGAGCCGGTCTAATGGTGGTTCAAGGATCAGCCGAACAATTGGCGGTGGTAGTTGGACTCAGAAGGAGCCAATCAAGTTTGTGTGCGACGAGGGCAGATCAATTGGGGTGAAGAGAAAGCTTAGATATCACAACCAAGGGTCAGATCAACATGTGCAGTGGTGTTTGGATGAGTATACTAGTGTTGAGGTTGCTAATTCATGTGCAATTTTCCGGCTCCGGAAAAACGAGCGACAATACGAATCACTGTGTGGTATTTGTGTGGAAGACTTCTTTCAGCCTCTACCATTAGGAAGAGCCTTGGGAAATTTAGGACAGGAGGCTGCCAAATTGGTGTATGATGATGAAGGCGAAAGAAAGCCGATTGGGAGAAAGAGGAAACTCAGATATGTTAACCAAGGCTCTGTGCATCATGGGGAGTGGTATTTGGAAGAGTACACAAGCCTTGTTGATGAGGGTGCAATTTTGCTTCTTCGAAAAAACGAGCGGTACAAAGCACCGGCTTCATCAGGAATTCCAAGTGAAAAGAAGAGGAAACACAGAGAAATTGATCGACTGGAGGAGAAGAAGCCTAGAAAGAAAAAAGTTTCCAGACAACTAGTAATGCAGGACTCGGATTTACTTGATACCAGTCCCAGTCCCACAGTGCCTATTCAACAACAAGAACCTCACAGTGGTGGTGATGATAATTTCGTCTTCTTCAAGGATTTTGATATTGGAACATGGGAGTTTCCTTCTCTGGATGATTTTGTCATGGCTTGTCCTCCTCCACTTACGGATTGCTATCAAGAAGCATTAGCAACACTTGAGTTTCCTTCTCTCGATGAATTTGTCATGGCTTGTCCTCCTTCACTTATGAATTTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

413

Amino Acids

46.89

Weight (kDa)

6.06

Isoelectric Point (pI)

58.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 63 - 184 5.5e-14 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 859
AccI GTMKAC 1 cut(s) 548
AccIII TCCGGA 1 cut(s) 591
AciI CCGC 3 cut(s) 44, 417, 859
AclWI GGATC 1 cut(s) 407
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 5 cut(s) 244, 679, 885, 1199, 1231
AcuI CTGAAG 1 cut(s) 386
AdeI CACNNNGTG 1 cut(s) 623
AfaI GTAC 2 cut(s) 809, 863
AfiI CCNNNNNNNGG 1 cut(s) 1046
AflIII ACRYGT 1 cut(s) 523
AgsI TTSAA 3 cut(s) 396, 1028, 1075
AhlI ACTAGT 2 cut(s) 551, 970
AjnI CCWGG 2 cut(s) 276, 287
AleI CACNNNNGTG 1 cut(s) 1047
AluBI AGCT 1 cut(s) 493
AluI AGCT 1 cut(s) 493
AlwI GGATC 1 cut(s) 407
Ama87I CYCGRG 1 cut(s) 67
Aor13HI TCCGGA 1 cut(s) 591
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 28, 695
ApoI RAATTY 5 cut(s) 244, 679, 885, 1199, 1231
AspLEI GCGC 1 cut(s) 100
AsuHPI GGTGA 3 cut(s) 99, 493, 1064
AsuII TTCGAA 1 cut(s) 847
AvaI CYCGRG 1 cut(s) 67
BalI TGGCCA 1 cut(s) 276
BanII GRGCYC 1 cut(s) 288
BbsI GAAGAC 2 cut(s) 645, 1060
BbvI GCAGC 2 cut(s) 15, 682
BceAI ACGGC 2 cut(s) 154, 177
BciT130I CCWGG 2 cut(s) 278, 289
BcuI ACTAGT 2 cut(s) 551, 970
BfaI CTAG 4 cut(s) 311, 552, 945, 971
BfoI RGCGCY 1 cut(s) 101
BisI GCNGC 2 cut(s) 29, 696
BlsI GCNGC 2 cut(s) 30, 697
Bme1390I CCNGG 2 cut(s) 278, 289
BmeT110I CYCGRG 1 cut(s) 67
BmiI GGNNCC 2 cut(s) 441, 590
BmrFI CCNGG 2 cut(s) 278, 289
BmrI ACTGGG 1 cut(s) 1002
BmsI GCATC 1 cut(s) 790
BmuI ACTGGG 1 cut(s) 1002
BpiI GAAGAC 2 cut(s) 645, 1060
BpmI CTGGAG 1 cut(s) 950
Bpu14I TTCGAA 1 cut(s) 847
BpuEI CTTGAG 1 cut(s) 1199
BsaBI GATNNNNATC 2 cut(s) 264, 1155
BsaJI CCNNGG 5 cut(s) 287, 288, 508, 672, 769
BsaWI WCCGGW 1 cut(s) 591
Bsc4I CCNNNNNNNGG 1 cut(s) 1046
Bse118I RCCGGY 3 cut(s) 94, 378, 871
Bse1I ACTGG 3 cut(s) 933, 1002, 1008
Bse8I GATNNNNATC 2 cut(s) 264, 1155
BseAI TCCGGA 1 cut(s) 591
BseBI CCWGG 2 cut(s) 278, 289
BseDI CCNNGG 5 cut(s) 287, 288, 508, 672, 769
BseGI GGATG 2 cut(s) 547, 1120
BseJI GATNNNNATC 2 cut(s) 264, 1155
BseLI CCNNNNNNNGG 1 cut(s) 1046
BseMII CTCAG 3 cut(s) 101, 446, 769
BseNI ACTGG 3 cut(s) 933, 1002, 1008
BseRI GAGGAG 2 cut(s) 947, 1128
BseXI GCAGC 2 cut(s) 15, 682
BsgI GTGCAG 1 cut(s) 548
BshFI GGCC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 5 cut(s) 95, 379, 586, 592, 872
BslFI GGGAC 3 cut(s) 314, 990, 996
BslI CCNNNNNNNGG 1 cut(s) 1046
BsmFI GGGAC 3 cut(s) 314, 990, 996
BsnI GGCC 1 cut(s) 276
BsoBI CYCGRG 1 cut(s) 67
Bsp119I TTCGAA 1 cut(s) 847
Bsp1286I GDGCHC 1 cut(s) 288
Bsp13I TCCGGA 1 cut(s) 591
Bsp143I GATC 5 cut(s) 265, 399, 470, 517, 922
BspACI CCGC 3 cut(s) 44, 417, 859
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 3 cut(s) 100, 445, 768
BspEI TCCGGA 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 441, 590
BspPI GGATC 1 cut(s) 407
BspQI GCTCTTC 2 cut(s) 276, 661
BspT104I TTCGAA 1 cut(s) 847
BsrBI CCGCTC 1 cut(s) 859
BsrFI RCCGGY 3 cut(s) 94, 378, 871
BsrI ACTGG 3 cut(s) 933, 1002, 1008
BssAI RCCGGY 3 cut(s) 94, 378, 871
BssECI CCNNGG 5 cut(s) 287, 288, 508, 672, 769
BssMI GATC 5 cut(s) 265, 399, 470, 517, 922
BssNAI GTATAC 1 cut(s) 549
BssT1I CCWWGG 3 cut(s) 508, 672, 769
Bst1107I GTATAC 1 cut(s) 549
Bst2UI CCWGG 2 cut(s) 278, 289
Bst4CI ACNGT 3 cut(s) 621, 1018, 1046
Bst6I CTCTTC 5 cut(s) 276, 479, 661, 798, 896
BstBI TTCGAA 1 cut(s) 847
BstDEI CTNAG 4 cut(s) 87, 432, 494, 755
BstF5I GGATG 2 cut(s) 547, 1120
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 5 cut(s) 268, 402, 473, 520, 925
BstMBI GATC 5 cut(s) 265, 399, 470, 517, 922
BstMWI GCNNNNNNNGC 2 cut(s) 97, 465
BstNI CCWGG 2 cut(s) 278, 289
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 2 cut(s) 276, 287
BstV1I GCAGC 2 cut(s) 15, 682
BstV2I GAAGAC 2 cut(s) 645, 1060
BstZ17I GTATAC 1 cut(s) 549
BsuRI GGCC 1 cut(s) 276
BtsCI GGATG 2 cut(s) 547, 1120
BtsI GCAGTG 2 cut(s) 164, 536
BtsIMutI CAGTG 5 cut(s) 164, 536, 617, 1023, 1051
CfoI GCGC 1 cut(s) 100
Cfr10I RCCGGY 3 cut(s) 94, 378, 871
Csp6I GTAC 2 cut(s) 808, 862
CviAII CATG 8 cut(s) 136, 355, 524, 573, 785, 1095, 1126, 1207
CviQI GTAC 2 cut(s) 808, 862
DdeI CTNAG 4 cut(s) 87, 432, 494, 755
DpnI GATC 5 cut(s) 267, 401, 472, 519, 924
DpnII GATC 5 cut(s) 265, 399, 470, 517, 922
DraIII CACNNNGTG 1 cut(s) 623
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 5 cut(s) 276, 479, 661, 798, 896
EarI CTCTTC 5 cut(s) 276, 479, 661, 798, 896
EciI GGCGGA 1 cut(s) 33
Eco130I CCWWGG 3 cut(s) 508, 672, 769
Eco24I GRGCYC 1 cut(s) 288
Eco32I GATATC 2 cut(s) 308, 500
Eco57I CTGAAG 1 cut(s) 386
Eco88I CYCGRG 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 885
EcoRII CCWGG 2 cut(s) 276, 287
EcoRV GATATC 2 cut(s) 308, 500
EcoT14I CCWWGG 3 cut(s) 508, 672, 769
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 3 cut(s) 508, 672, 769
FaeI CATG 8 cut(s) 139, 358, 527, 576, 788, 1098, 1129, 1210
FaqI GGGAC 3 cut(s) 314, 990, 996
FatI CATG 8 cut(s) 135, 354, 523, 572, 784, 1094, 1125, 1206
FblI GTMKAC 1 cut(s) 548
Fnu4HI GCNGC 2 cut(s) 29, 696
FokI GGATG 2 cut(s) 554, 1127
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 2 cut(s) 29, 696
FspBI CTAG 4 cut(s) 311, 552, 945, 971
GlaI GCGC 1 cut(s) 99
GluI GCNGC 2 cut(s) 29, 696
GsuI CTGGAG 1 cut(s) 950
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 1 cut(s) 276
HapII CCGG 5 cut(s) 95, 379, 586, 592, 872
HhaI GCGC 1 cut(s) 100
Hin1II CATG 8 cut(s) 139, 358, 527, 576, 788, 1098, 1129, 1210
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HindIII AAGCTT 1 cut(s) 491
HpaI GTTAAC 1 cut(s) 766
HpaII CCGG 5 cut(s) 95, 379, 586, 592, 872
HphI GGTGA 3 cut(s) 99, 493, 1064
Hpy166II GTNNAC 3 cut(s) 549, 766, 810
Hpy188I TCNGA 6 cut(s) 84, 120, 435, 517, 758, 988
Hpy188III TCNNGA 6 cut(s) 592, 882, 963, 1112, 1160, 1193
Hpy8I GTNNAC 3 cut(s) 549, 766, 810
Hpy99I CGWCG 1 cut(s) 464
HpyAV CCTTC 8 cut(s) 87, 114, 369, 430, 713, 1116, 1197, 1230
HpyCH4III ACNGT 3 cut(s) 621, 1018, 1046
HpyCH4V TGCA 5 cut(s) 529, 578, 781, 833, 979
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 465
HpyF3I CTNAG 4 cut(s) 87, 432, 494, 755
Hsp92II CATG 8 cut(s) 139, 358, 527, 576, 788, 1098, 1129, 1210
HspAI GCGC 1 cut(s) 98
Kpn2I TCCGGA 1 cut(s) 591
KspAI GTTAAC 1 cut(s) 766
Kzo9I GATC 5 cut(s) 265, 399, 470, 517, 922
LguI GCTCTTC 2 cut(s) 276, 661
LmnI GCTCC 2 cut(s) 439, 594
Lsp1109I GCAGC 2 cut(s) 15, 682
LweI GCATC 1 cut(s) 790
MaeI CTAG 4 cut(s) 311, 552, 945, 971
MalI GATC 5 cut(s) 267, 401, 472, 519, 924
MbiI CCGCTC 1 cut(s) 859
MboI GATC 5 cut(s) 265, 399, 470, 517, 922
MfeI CAATTG 2 cut(s) 411, 474
MhlI GDGCHC 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 276
MluNI TGGCCA 1 cut(s) 276
MlyI GAGTC 4 cut(s) 34, 79, 424, 977
MmeI TCCRAC 2 cut(s) 107, 407
Mox20I TGGCCA 1 cut(s) 276
MroI TCCGGA 1 cut(s) 591
MscI TGGCCA 1 cut(s) 276
MseI TTAA 1 cut(s) 765
MslI CAYNNNNRTG 1 cut(s) 1047
Msp20I TGGCCA 1 cut(s) 276
MspI CCGG 5 cut(s) 95, 379, 586, 592, 872
MspR9I CCNGG 2 cut(s) 278, 289
MunI CAATTG 2 cut(s) 411, 474
MvaI CCWGG 2 cut(s) 278, 289
MwoI GCNNNNNNNGC 2 cut(s) 97, 465
NdeII GATC 5 cut(s) 265, 399, 470, 517, 922
NlaIII CATG 8 cut(s) 139, 358, 527, 576, 788, 1098, 1129, 1210
NlaIV GGNNCC 2 cut(s) 441, 590
NspI RCATGY 1 cut(s) 527
NspV TTCGAA 1 cut(s) 847
OliI CACNNNNGTG 1 cut(s) 1047
PasI CCCWGGG 1 cut(s) 288
PciI ACATGT 1 cut(s) 523
PciSI GCTCTTC 2 cut(s) 276, 661
PcsI WCGNNNNNNNCGW 2 cut(s) 80, 167
PfeI GAWTC 6 cut(s) 52, 115, 132, 203, 233, 614
PkrI GCNGC 2 cut(s) 30, 697
PleI GAGTC 4 cut(s) 34, 79, 424, 977
PpsI GAGTC 4 cut(s) 34, 79, 424, 977
PscI ACATGT 1 cut(s) 523
Psp6I CCWGG 2 cut(s) 276, 287
PspGI CCWGG 2 cut(s) 276, 287
PspN4I GGNNCC 2 cut(s) 441, 590
RsaI GTAC 2 cut(s) 809, 863
RsaNI GTAC 2 cut(s) 808, 862
RseI CAYNNNNRTG 1 cut(s) 1047
SapI GCTCTTC 2 cut(s) 276, 661
SaqAI TTAA 1 cut(s) 765
SatI GCNGC 2 cut(s) 29, 696
Sau3AI GATC 5 cut(s) 265, 399, 470, 517, 922
SchI GAGTC 4 cut(s) 34, 79, 424, 977
ScrFI CCNGG 2 cut(s) 278, 289
SduI GDGCHC 1 cut(s) 288
SetI ASST 5 cut(s) 178, 221, 495, 564, 1042
SfaNI GCATC 1 cut(s) 790
SfuI TTCGAA 1 cut(s) 847
SmiMI CAYNNNNRTG 1 cut(s) 1047
SmlI CTYRAG 1 cut(s) 1178
SmoI CTYRAG 1 cut(s) 1178
SpeI ACTAGT 2 cut(s) 551, 970
SsiI CCGC 3 cut(s) 44, 417, 859
SspMI CTAG 4 cut(s) 311, 552, 945, 971
StyD4I CCNGG 2 cut(s) 276, 287
StyI CCWWGG 3 cut(s) 508, 672, 769
TaaI ACNGT 3 cut(s) 621, 1018, 1046
TaqI TCGA 6 cut(s) 5, 38, 140, 847, 925, 1194
TatI WGTACW 1 cut(s) 807
TfiI GAWTC 6 cut(s) 52, 115, 132, 203, 233, 614
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TscAI CASTG 5 cut(s) 171, 536, 624, 1023, 1051
TseI GCWGC 2 cut(s) 28, 695
TspGWI ACGGA 1 cut(s) 1163
TspRI CASTG 5 cut(s) 171, 536, 624, 1023, 1051
XapI RAATTY 5 cut(s) 244, 679, 885, 1199, 1231
XceI RCATGY 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 548
XspI CTAG 4 cut(s) 311, 552, 945, 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.