Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012646

Physical Location & Seq

Genomic Coordinates Forward (+)

44046820 .. 44048574

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57674

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1755 bp

ATGTCGATTTCATCTTCTTCTTATTCCGGTGGGTTTCTCACGTCCGAGCCCTCAAATTCGATGGTGGCCTCCTCGTCTTCTTCTGGGTCTGTGATGCCAACGCTGCCGTTAGGTATGAAGATGTCATTCATCCCCACCGATTCACTGCTCGTCAGGTTTATTCTCCACGATTCTGCCCCGAATTTTATTATTACTGATTGCGATCTATTTGGCCAGGAAGAGCCCTGGGAAATCTGGGACAGATATCTAGGGTTTCTAAACCAATACAACCCAGATGAACTTTACTTCTTCATGCCTTCGTTAAAGAAACTGAGCCCTAATGGTGGTTCAAGGATCAACCGAACAATTGGCGGTGGTAGTTGGACTCAGAAGGAGCCAATCAAGTTTGTGTGCGACGATGAGGACGAGGGCAGATCAATTGGGGTGAAGAGAAAGCTTAGATATCACAACCAAGGGTCAGATCAACATGTGCAGTGGTGTTTGGATGAGTATACTAGTGTTGAGGTTGCTAATTCATGTGCAATTTTTCGGCTCCGGAAAAACGAGCGACAATACAAATCACTATGTGGTATTTGTGTGGAAGACTTCATTCAGCCTCTACCATTAGGTATGAAGATTTTATTCCGCCCCACGGACTCACAATTGATTAGGTACTTTCTTGGTTTTGATATTGCCCCAGATTTTATTGTTTATGATTGTGATTTGTTTGGTCAGGAAGAGCCTTGGGAAATTTGGGACAGGTATTCCGTGGTTTTTAACAACTCAGACCTTTTGTACTTTTTCACATCGTCTATGAAGAAACTGGGCTCCAAGGGGAGGGTTTGTAATTTTGGTCGAAGAGTTGGGTCTGGTACATGGAACCAAAAGGAGGCTGCCAAATTGGTGTATGATGATGAAGGCGAGGCCGATCAAGAAAGAAAGCCAATTGGGAGAAAGAGGAAACTTAGATATGTTAACCAAGGCTCAGTGCATCATGGGGAGTGGTATTTGGAAGAGTATACAAGCCTTGTTGATGAGGGTGCGATTTTGCTTCTTCGAAAAAACGAGCGGTACAAAGCACCAGCTGCATCAATGTCGTCAGGAATTCCAAGTGAAAAGAAGAGGAAACACGGAGAAATTGATCGATTGGAGGAAAAGAAGCCTAGAAAGAAAAAAGCGTCGAGACAAAGCCAAACTACTACCAGTCCGACAATGCCTATTCAACAACGAGAACCTGGCAATGGTGATGATAATTTCGTGTTCTTCAAGGGTATTGATATTGGAACATGGGAGTTTCCTTCTCTGGATGATTTTGTCATGGCTTGCCCTCCTCCACTTGCGGAATGTGATCAAGAAGCATTAGCAACCCTTGAGTTTCCTTCTCTGGATGAATTTGTCATGGCTTATCCTCCTCCACTTAAGGATTGCGATCAAGAAGAATTAGCAACCCTTGAGTTTCCTTCTCCAGAAGACTTGGCTTCTCCTTCTCCTCCTCTTGACGACTGTGACCAACAAGTAATAGCAGCAGTCAATATTGATGATAATCATGATCTCACGGGATCCTGTAATGATGATGATATTGCAACATGGAGTTTTCCTATCGTGGACTATTCATTGACTTCTCTTCTTCAAGGAAAATGTGATGAACAAGCATTAGCATTAGTCAACAGCGATGATTATCTACATTTCGTGAAAGAGGATACTGGAGCATGGTGTCCTGCTTTTGTGGATGATTTCTTGATGGCTCTTCTTGTGGACTGTGATGAACAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

584

Amino Acids

66.06

Weight (kDa)

4.65

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	41 - 165	9.1e-15	No apical meristem (NAM) protein
NAM	PF02365	207 - 334	4.9e-13	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012646)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12150
rosa_chinensis	RchiOBHm_Chr1g0350911
rosa_laevigata	RLG00000028443 RLG00000028444
rosa_multiflora	Rmu_sc0014584.1_g000008 Rmu_sc0014584.1_g000010
rosa_roxburghii	Rroxscaffold_4G00304380 Rroxscaffold_4G00304420
rosa_rugosa	Rorug01G0215100 Rorug06G0023100 Rorug06G0023200
rosa_samantha	Rh1AG229500 Rh1AG229700 Rh1AG229800 Rh1BG075100 Rh1BG199500 Rh1BG199700 Rh1DG227500
rosa_wichuraiana	Rw1G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1048
AccI	GTMKAC	2 cut(s)	491, 998
AccIII	TCCGGA	1 cut(s)	534
AciI	CCGC	4 cut(s)	351, 625, 1048, 1319
AclWI	GGATC	3 cut(s)	341, 1533, 1546
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	5 cut(s)	55, 181, 729, 1083, 1370
AdeI	CACNNNGTG	1 cut(s)	566
AfaI	GTAC	4 cut(s)	653, 776, 853, 1052
AfiI	CCNNNNNNNGG	5 cut(s)	323, 631, 816, 868, 1220
AflII	CTTAAG	1 cut(s)	1397
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	4 cut(s)	330, 1202, 1246, 1610
AhlI	ACTAGT	1 cut(s)	494
AjiI	CACGTC	1 cut(s)	42
AjnI	CCWGG	3 cut(s)	213, 224, 1213
AluBI	AGCT	2 cut(s)	436, 1064
AluI	AGCT	2 cut(s)	436, 1064
Alw26I	GTCTC	1 cut(s)	1156
AlwI	GGATC	3 cut(s)	341, 1533, 1546
Aor13HI	TCCGGA	1 cut(s)	534
AoxI	GGCC	3 cut(s)	66, 211, 903
ApeKI	GCWGC	4 cut(s)	103, 872, 1064, 1502
ApoI	RAATTY	5 cut(s)	55, 181, 729, 1083, 1370
AsuHPI	GGTGA	2 cut(s)	436, 1235
AsuII	TTCGAA	1 cut(s)	1036
BalI	TGGCCA	1 cut(s)	213
BamHI	GGATCC	1 cut(s)	1538
BanII	GRGCYC	4 cut(s)	51, 225, 317, 809
BbsI	GAAGAC	3 cut(s)	69, 588, 1455
BbvI	GCAGC	4 cut(s)	90, 859, 1051, 1514
BccI	CCATC	2 cut(s)	55, 1714
BceAI	ACGGC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	1056, 1090
BciT130I	CCWGG	3 cut(s)	215, 226, 1215
BciVI	GTATCC	1 cut(s)	1672
BclI	TGATCA	1 cut(s)	1327
BcoDI	GTCTC	1 cut(s)	1156
BcuI	ACTAGT	1 cut(s)	494
BfaI	CTAG	3 cut(s)	248, 495, 1143
BfrI	CTTAAG	1 cut(s)	1397
BfuI	GTATCC	1 cut(s)	1672
BisI	GCNGC	4 cut(s)	104, 873, 1065, 1503
BlsI	GCNGC	4 cut(s)	105, 874, 1066, 1504
Bme1390I	CCNGG	3 cut(s)	215, 226, 1215
BmgBI	CACGTC	1 cut(s)	42
BmiI	GGNNCC	5 cut(s)	375, 533, 808, 860, 1540
BmrFI	CCNGG	3 cut(s)	215, 226, 1215
BmrI	ACTGGG	1 cut(s)	812
BmsI	GCATC	3 cut(s)	84, 979, 1076
BmuI	ACTGGG	1 cut(s)	812
BpiI	GAAGAC	3 cut(s)	69, 588, 1455
BpmI	CTGGAG	2 cut(s)	1428, 1704
Bpu14I	TTCGAA	1 cut(s)	1036
BpuEI	CTTGAG	2 cut(s)	1370, 1451
Bsa29I	ATCGAT	1 cut(s)	1123
BsaBI	GATNNNNATC	4 cut(s)	201, 1407, 1521, 1656
BsaJI	CCNNGG	8 cut(s)	224, 225, 451, 630, 722, 747, 810, 958
BsaWI	WCCGGW	2 cut(s)	26, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	808, 838
Bsc4I	CCNNNNNNNGG	5 cut(s)	323, 631, 816, 868, 1220
Bse1I	ACTGG	3 cut(s)	807, 1182, 1687
Bse3DI	GCAATG	1 cut(s)	1225
Bse8I	GATNNNNATC	4 cut(s)	201, 1407, 1521, 1656
BseAI	TCCGGA	1 cut(s)	534
BseBI	CCWGG	3 cut(s)	215, 226, 1215
BseCI	ATCGAT	1 cut(s)	1123
BseDI	CCNNGG	8 cut(s)	224, 225, 451, 630, 722, 747, 810, 958
BseGI	GGATG	5 cut(s)	129, 490, 1291, 1372, 1714
BseJI	GATNNNNATC	4 cut(s)	201, 1407, 1521, 1656
BseLI	CCNNNNNNNGG	5 cut(s)	323, 631, 816, 868, 1220
BseMI	GCAATG	1 cut(s)	1225
BseMII	CTCAG	4 cut(s)	302, 380, 777, 978
BseNI	ACTGG	3 cut(s)	807, 1182, 1687
BseRI	GAGGAG	5 cut(s)	61, 1299, 1380, 1458, 1461
BseXI	GCAGC	4 cut(s)	90, 859, 1051, 1514
BsgI	GTGCAG	1 cut(s)	491
BshFI	GGCC	3 cut(s)	68, 213, 905
BshVI	ATCGAT	1 cut(s)	1123
BsiSI	CCGG	2 cut(s)	27, 535
BslFI	GGGAC	2 cut(s)	251, 749
BslI	CCNNNNNNNGG	5 cut(s)	323, 631, 816, 868, 1220
BsmAI	GTCTC	1 cut(s)	1156
BsmFI	GGGAC	2 cut(s)	251, 749
BsnI	GGCC	3 cut(s)	68, 213, 905
Bsp119I	TTCGAA	1 cut(s)	1036
Bsp1286I	GDGCHC	4 cut(s)	51, 225, 317, 809
Bsp13I	TCCGGA	1 cut(s)	534
BspACI	CCGC	4 cut(s)	351, 625, 1048, 1319
BspANI	GGCC	3 cut(s)	68, 213, 905
BspCNI	CTCAG	4 cut(s)	303, 379, 776, 977
BspDI	ATCGAT	1 cut(s)	1123
BspEI	TCCGGA	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	1525
BspLI	GGNNCC	5 cut(s)	375, 533, 808, 860, 1540
BspPI	GGATC	3 cut(s)	341, 1533, 1546
BspQI	GCTCTTC	3 cut(s)	213, 711, 1731
BspT104I	TTCGAA	1 cut(s)	1036
BspTI	CTTAAG	1 cut(s)	1397
BsrBI	CCGCTC	1 cut(s)	1048
BsrDI	GCAATG	1 cut(s)	1225
BsrI	ACTGG	3 cut(s)	807, 1182, 1687
BssECI	CCNNGG	8 cut(s)	224, 225, 451, 630, 722, 747, 810, 958
BssNAI	GTATAC	2 cut(s)	492, 999
BssT1I	CCWWGG	4 cut(s)	451, 722, 810, 958
Bst1107I	GTATAC	2 cut(s)	492, 999
Bst2UI	CCWGG	3 cut(s)	215, 226, 1215
Bst4CI	ACNGT	2 cut(s)	1484, 1739
Bst6I	CTCTTC	8 cut(s)	213, 422, 711, 832, 987, 1094, 1608, 1731
BstAFI	CTTAAG	1 cut(s)	1397
BstAPI	GCANNNNNTGC	1 cut(s)	1064
BstBI	TTCGAA	1 cut(s)	1036
BstC8I	GCNNGC	1 cut(s)	1303
BstDEI	CTNAG	6 cut(s)	311, 366, 437, 763, 944, 964
BstDSI	CCRYGG	2 cut(s)	630, 747
BstF5I	GGATG	5 cut(s)	129, 490, 1291, 1372, 1714
BstMAI	GTCTC	1 cut(s)	1156
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 1064
BstNI	CCWGG	3 cut(s)	215, 226, 1215
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	3 cut(s)	213, 224, 1213
BstV1I	GCAGC	4 cut(s)	90, 859, 1051, 1514
BstV2I	GAAGAC	3 cut(s)	69, 588, 1455
BstX2I	RGATCY	1 cut(s)	1538
BstYI	RGATCY	1 cut(s)	1538
BstZ17I	GTATAC	2 cut(s)	492, 999
Bsu15I	ATCGAT	1 cut(s)	1123
BsuI	GTATCC	1 cut(s)	1672
BsuRI	GGCC	3 cut(s)	68, 213, 905
BsuTUI	ATCGAT	1 cut(s)	1123
BtgI	CCRYGG	2 cut(s)	630, 747
BtgZI	GCGATG	1 cut(s)	1665
BtrI	CACGTC	1 cut(s)	42
BtsCI	GGATG	5 cut(s)	129, 490, 1291, 1372, 1714
BtsI	GCAGTG	2 cut(s)	143, 479
BtsIMutI	CAGTG	3 cut(s)	143, 479, 972
Cac8I	GCNNGC	1 cut(s)	1303
CciI	TCATGA	1 cut(s)	1525
ClaI	ATCGAT	1 cut(s)	1123
CseI	GACGC	1 cut(s)	1146
Csp6I	GTAC	4 cut(s)	652, 775, 852, 1051
CviQI	GTAC	4 cut(s)	652, 775, 852, 1051
DdeI	CTNAG	6 cut(s)	311, 366, 437, 763, 944, 964
DraIII	CACNNNGTG	1 cut(s)	566
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	8 cut(s)	213, 422, 711, 832, 987, 1094, 1608, 1731
EarI	CTCTTC	8 cut(s)	213, 422, 711, 832, 987, 1094, 1608, 1731
EciI	GGCGGA	1 cut(s)	614
Eco130I	CCWWGG	4 cut(s)	451, 722, 810, 958
Eco24I	GRGCYC	4 cut(s)	51, 225, 317, 809
Eco32I	GATATC	2 cut(s)	245, 443
EcoRI	GAATTC	1 cut(s)	1083
EcoRII	CCWGG	3 cut(s)	213, 224, 1213
EcoRV	GATATC	2 cut(s)	245, 443
EcoT14I	CCWWGG	4 cut(s)	451, 722, 810, 958
EcoT38I	GRGCYC	4 cut(s)	51, 225, 317, 809
ErhI	CCWWGG	4 cut(s)	451, 722, 810, 958
FaqI	GGGAC	2 cut(s)	251, 749
FbaI	TGATCA	1 cut(s)	1327
FblI	GTMKAC	2 cut(s)	491, 998
Fnu4HI	GCNGC	4 cut(s)	104, 873, 1065, 1503
FokI	GGATG	5 cut(s)	116, 497, 1298, 1379, 1721
FriOI	GRGCYC	4 cut(s)	51, 225, 317, 809
Fsp4HI	GCNGC	4 cut(s)	104, 873, 1065, 1503
FspBI	CTAG	3 cut(s)	248, 495, 1143
GluI	GCNGC	4 cut(s)	104, 873, 1065, 1503
GsuI	CTGGAG	2 cut(s)	1428, 1704
HaeIII	GGCC	3 cut(s)	68, 213, 905
HapII	CCGG	2 cut(s)	27, 535
HgaI	GACGC	1 cut(s)	1146
HincII	GTYRAC	2 cut(s)	955, 1645
HindII	GTYRAC	2 cut(s)	955, 1645
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	4 cut(s)	140, 170, 364, 635
HpaI	GTTAAC	1 cut(s)	955
HpaII	CCGG	2 cut(s)	27, 535
HphI	GGTGA	2 cut(s)	436, 1235
Hpy166II	GTNNAC	6 cut(s)	492, 955, 999, 1585, 1645, 1735
Hpy188I	TCNGA	5 cut(s)	46, 369, 460, 766, 1188
Hpy8I	GTNNAC	6 cut(s)	492, 955, 999, 1585, 1645, 1735
Hpy99I	CGWCG	2 cut(s)	398, 1162
HpyAV	CCTTC	7 cut(s)	306, 364, 890, 1287, 1368, 1449, 1473
HpyCH4III	ACNGT	2 cut(s)	1484, 1739
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	5 cut(s)	472, 521, 970, 1067, 1562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 1064
HpyF3I	CTNAG	6 cut(s)	311, 366, 437, 763, 944, 964
HpySE526I	ACGT	1 cut(s)	41
Kpn2I	TCCGGA	1 cut(s)	534
Ksp22I	TGATCA	1 cut(s)	1327
KspAI	GTTAAC	1 cut(s)	955
LguI	GCTCTTC	3 cut(s)	213, 711, 1731
LmnI	GCTCC	4 cut(s)	373, 537, 812, 1685
Lsp1109I	GCAGC	4 cut(s)	90, 859, 1051, 1514
LweI	GCATC	3 cut(s)	84, 979, 1076
MaeI	CTAG	3 cut(s)	248, 495, 1143
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	1484
MbiI	CCGCTC	1 cut(s)	1048
MfeI	CAATTG	4 cut(s)	345, 417, 641, 924
MflI	RGATCY	1 cut(s)	1538
MhlI	GDGCHC	4 cut(s)	51, 225, 317, 809
MlsI	TGGCCA	1 cut(s)	213
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	2 cut(s)	358, 629
MmeI	TCCRAC	2 cut(s)	341, 1211
Mox20I	TGGCCA	1 cut(s)	213
MroI	TCCGGA	1 cut(s)	534
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	4 cut(s)	302, 756, 954, 1398
Msp20I	TGGCCA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	1064
MspCI	CTTAAG	1 cut(s)	1397
MspI	CCGG	2 cut(s)	27, 535
MspR9I	CCNGG	3 cut(s)	215, 226, 1215
MunI	CAATTG	4 cut(s)	345, 417, 641, 924
MvaI	CCWGG	3 cut(s)	215, 226, 1215
MwoI	GCNNNNNNNGC	2 cut(s)	103, 1064
NlaIV	GGNNCC	5 cut(s)	375, 533, 808, 860, 1540
NmuCI	GTSAC	1 cut(s)	1484
NspI	RCATGY	1 cut(s)	470
NspV	TTCGAA	1 cut(s)	1036
PagI	TCATGA	1 cut(s)	1525
PasI	CCCWGGG	1 cut(s)	225
PciI	ACATGT	1 cut(s)	466
PciSI	GCTCTTC	3 cut(s)	213, 711, 1731
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	140, 170
PkrI	GCNGC	4 cut(s)	105, 874, 1066, 1504
PleI	GAGTC	2 cut(s)	358, 629
PpsI	GAGTC	2 cut(s)	358, 629
PscI	ACATGT	1 cut(s)	466
Psp6I	CCWGG	3 cut(s)	213, 224, 1213
PspGI	CCWGG	3 cut(s)	213, 224, 1213
PspN4I	GGNNCC	5 cut(s)	375, 533, 808, 860, 1540
PsuI	RGATCY	1 cut(s)	1538
PvuII	CAGCTG	1 cut(s)	1064
RsaI	GTAC	4 cut(s)	653, 776, 853, 1052
RsaNI	GTAC	4 cut(s)	652, 775, 852, 1051
SapI	GCTCTTC	3 cut(s)	213, 711, 1731
SaqAI	TTAA	4 cut(s)	302, 756, 954, 1398
SatI	GCNGC	4 cut(s)	104, 873, 1065, 1503
SchI	GAGTC	2 cut(s)	358, 629
ScrFI	CCNGG	3 cut(s)	215, 226, 1215
SduI	GDGCHC	4 cut(s)	51, 225, 317, 809
SfaNI	GCATC	3 cut(s)	84, 979, 1076
SfuI	TTCGAA	1 cut(s)	1036
SmlI	CTYRAG	3 cut(s)	1349, 1397, 1430
SmoI	CTYRAG	3 cut(s)	1349, 1397, 1430
SpeI	ACTAGT	1 cut(s)	494
SsiI	CCGC	4 cut(s)	351, 625, 1048, 1319
SspI	AATATT	1 cut(s)	1513
SspMI	CTAG	3 cut(s)	248, 495, 1143
StyD4I	CCNGG	3 cut(s)	213, 224, 1213
StyI	CCWWGG	4 cut(s)	451, 722, 810, 958
TaaI	ACNGT	2 cut(s)	1484, 1739
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	6 cut(s)	5, 59, 835, 1036, 1123, 1160
TatI	WGTACW	1 cut(s)	774
TfiI	GAWTC	2 cut(s)	140, 170
Tru1I	TTAA	4 cut(s)	302, 756, 954, 1398
Tru9I	TTAA	4 cut(s)	302, 756, 954, 1398
TscAI	CASTG	3 cut(s)	150, 479, 972
TseFI	GTSAC	1 cut(s)	1484
TseI	GCWGC	4 cut(s)	103, 872, 1064, 1502
Tsp45I	GTSAC	1 cut(s)	1484
TspGWI	ACGGA	3 cut(s)	647, 736, 1125
TspRI	CASTG	3 cut(s)	150, 479, 972
Vha464I	CTTAAG	1 cut(s)	1397
XapI	RAATTY	5 cut(s)	55, 181, 729, 1083, 1370
XceI	RCATGY	1 cut(s)	470
XmiI	GTMKAC	2 cut(s)	491, 998
XspI	CTAG	3 cut(s)	248, 495, 1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.