Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007677

Physical Location & Seq

Genomic Coordinates Reverse (-)

12351622 .. 12353537

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAAGAGGAGCTCAAGAAAGTCGAAACCGAGCCTACTCCGGCGCCGGAGCCGCCTCTGGCCTCCGCCCCCGATGTCACTGTGGAGAAGGAGAAGGAGAAGGAGAAGGCTTTGCTTCCACCTCCACCTGGTGCTGTTGATGACTCCAAAGCTCTAGCTGTTGTTGAGCCTGAAAAGGTTCCTGAGACCATTGCTAAAAAGCCCTCAGGAGGATCACATGATAGAGATGTGGCTCTTGCAAACCTTGAGAAGGAAAAGAGTATGTCTTTTGTGAGGGCATGGGAAGATAGTGAGAAGGATAAGGCAGAGAACAAGGCCGAAAAGAGGCTCTCAACGGTTACTGCATGGGAAAACACCAAGAAGGCAGCTATTGAAGCCAAACTGAGAAGCATGGAGGAAAAACTGGAGAAGAAAAAGGCACAGTATGCGGAAAAAATGAAAAACCAAATTGCCCTGCTTCACAAACAAGCAGATGAAAAGAGGGCTATGATTCAAGCAGAGAGAGGGCAAGAACTTCTCAAGGCAGAGGAAATGGCCGCTAAATACCGTGCAACTGGTGGCGTTCCAAAGAAGTTCCTTGGCTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

197

Amino Acids

21.79

Weight (kDa)

6.8

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_N	PF03766	30 - 82	2.6e-15	Remorin, N-terminal region
Remorin_C	PF03763	86 - 191	6.9e-33	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45820 AT3G61260
fragaria_vesca	FvH4_7g13860 FvH4_7g13860
malus_domestica	MD01G1054900.v1.1 MD01G1055000.v1.1 MD07G1140300.v1.1
prunus_persica	Prupe.2G164400_v2.0.a1
pyrus_communis	pycom01g08040 pycom07g13810
rosa_chinensis	RchiOBHm_Chr1g0354071
rosa_laevigata	RLG00000028229
rosa_multiflora	Rmu_co7966600.1_g000001 Rmu_sc0004632.1_g000006 Rmu_sc0006777.1_g000004
rosa_roxburghii	Rroxscaffold_4G00301250
rosa_rugosa	Rorug01G0240800 Rorug01G0240900 Rorug03G0217400
rosa_samantha	Rh1AG251800 Rh1BG223700 Rh1CG236300 Rh1DG250600
rosa_wichuraiana	Rw1G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	4 cut(s)	53, 66, 428, 537
AclWI	GGATC	1 cut(s)	220
AcoI	YGGCCR	1 cut(s)	534
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	131
AfiI	CCNNNNNNNGG	4 cut(s)	128, 209, 250, 324
AgsI	TTSAA	2 cut(s)	374, 494
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	4 cut(s)	13, 152, 158, 368
AluI	AGCT	4 cut(s)	13, 152, 158, 368
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	220
AoxI	GGCC	3 cut(s)	60, 315, 534
ApeKI	GCWGC	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	177
AspLEI	GCGC	1 cut(s)	46
AxyI	CCTNAGG	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	377
BciT130I	CCWGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	47
BisI	GCNGC	3 cut(s)	53, 366, 537
BlsI	GCNGC	3 cut(s)	54, 367, 538
Bme1390I	CCNGG	1 cut(s)	129
BmiI	GGNNCC	3 cut(s)	45, 51, 180
BmrFI	CCNGG	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	425
BpuEI	CTTGAG	2 cut(s)	266, 503
BsaHI	GRCGYC	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 209, 250, 324
Bse1I	ACTGG	2 cut(s)	408, 559
Bse21I	CCTNAGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	577
BseLI	CCNNNNNNNGG	4 cut(s)	128, 209, 250, 324
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	174, 219, 374
BseNI	ACTGG	2 cut(s)	408, 559
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	377
BshFI	GGCC	3 cut(s)	62, 317, 536
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	41, 47
BslI	CCNNNNNNNGG	4 cut(s)	128, 209, 250, 324
BsmAI	GTCTC	1 cut(s)	179
BsnI	GGCC	3 cut(s)	62, 317, 536
Bso31I	GGTCTC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	212
BspACI	CCGC	4 cut(s)	53, 66, 428, 537
BspANI	GGCC	3 cut(s)	62, 317, 536
BspCNI	CTCAG	3 cut(s)	175, 218, 375
BspLI	GGNNCC	3 cut(s)	45, 51, 180
BspPI	GGATC	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	408, 559
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	1 cut(s)	212
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	4 cut(s)	82, 337, 423, 548
BstACI	GRCGYC	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstDEI	CTNAG	3 cut(s)	183, 205, 383
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	215
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 374, 425
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	377
Bsu36I	CCTNAGG	1 cut(s)	205
BsuRI	GGCC	3 cut(s)	62, 317, 536
BtsIMutI	CAGTG	1 cut(s)	78
CfoI	GCGC	1 cut(s)	46
CsiI	ACCWGGT	1 cut(s)	127
CviAII	CATG	4 cut(s)	218, 279, 345, 391
DdeI	CTNAG	3 cut(s)	183, 205, 383
DinI	GGCGCC	1 cut(s)	45
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
DraIII	CACNNNGTG	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	534
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	179
Eco53kI	GAGCTC	1 cut(s)	13
Eco81I	CCTNAGG	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	13
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	15
EgeI	GGCGCC	1 cut(s)	45
EheI	GGCGCC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	4 cut(s)	221, 282, 348, 394
FaiI	YATR	7 cut(s)	219, 263, 280, 346, 392, 426, 488
FatI	CATG	4 cut(s)	217, 278, 344, 390
Fnu4HI	GCNGC	3 cut(s)	53, 366, 537
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	3 cut(s)	53, 366, 537
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	3 cut(s)	53, 366, 537
GsuI	CTGGAG	1 cut(s)	425
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	3 cut(s)	62, 317, 536
HapII	CCGG	2 cut(s)	41, 47
HhaI	GCGC	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	4 cut(s)	221, 282, 348, 394
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	2 cut(s)	143, 490
HpaII	CCGG	2 cut(s)	41, 47
Hpy188III	TCNNGA	3 cut(s)	16, 182, 207
HpyAV	CCTTC	7 cut(s)	82, 88, 94, 100, 244, 289, 355
HpyCH4III	ACNGT	4 cut(s)	82, 337, 423, 548
HpyCH4V	TGCA	3 cut(s)	239, 344, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 374, 425
HpyF3I	CTNAG	3 cut(s)	183, 205, 383
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	4 cut(s)	221, 282, 348, 394
HspAI	GCGC	1 cut(s)	44
KasI	GGCGCC	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	212
LmnI	GCTCC	2 cut(s)	10, 49
Lsp1109I	GCAGC	1 cut(s)	377
MabI	ACCWGGT	1 cut(s)	127
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	2 cut(s)	76, 337
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	3 cut(s)	17, 296, 421
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	1 cut(s)	447
Mly113I	GGCGCC	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	177
MspI	CCGG	2 cut(s)	41, 47
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	3 cut(s)	52, 374, 425
NarI	GGCGCC	1 cut(s)	44
NdeII	GATC	1 cut(s)	212
NlaIII	CATG	4 cut(s)	221, 282, 348, 394
NlaIV	GGNNCC	3 cut(s)	45, 51, 180
NmuCI	GTSAC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	490
PkrI	GCNGC	3 cut(s)	54, 367, 538
PleI	GAGTC	1 cut(s)	137
PluTI	GGCGCC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	3 cut(s)	45, 51, 180
SacI	GAGCTC	1 cut(s)	15
SatI	GCNGC	3 cut(s)	53, 366, 537
Sau3AI	GATC	1 cut(s)	212
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	8 cut(s)	15, 124, 130, 154, 160, 180, 246, 370
SexAI	ACCWGGT	1 cut(s)	127
SfoI	GGCGCC	1 cut(s)	45
SmlI	CTYRAG	3 cut(s)	14, 245, 518
SmoI	CTYRAG	3 cut(s)	14, 245, 518
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	4 cut(s)	53, 66, 428, 537
SspDI	GGCGCC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	4 cut(s)	82, 337, 423, 548
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	447
TauI	GCSGC	2 cut(s)	55, 539
TfiI	GAWTC	1 cut(s)	490
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	452, 489
TspRI	CASTG	1 cut(s)	85
XagI	CCTNNNNNAGG	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.