Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007677

Physical Location & Seq

Genomic Coordinates Reverse (-)

46433017 .. 46434567

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG250600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAAGAGGAGGTCAAGAAAGTCGAAACCCAGCCTACTCCGGCGCCGGAGCCACCTTTGGCCTCCGCCCCCGCCCCCGCCCCAACCGACGAGAAGGCTTTGCTCCCACCACCACCCGGTGCTGCTGCTCATGTCGATGACACCAAAGCTCTCGCCGTCGTTGAACCTGAAAAGGTTCCAGAGACCATTGCTAAGAAGCCCTCAGCATCGCATGATCGAGATGTGACTCTTGCAAACCTTGAGAAGGAAAAAAGTATGTCTTTTGTGAGGGCATGGGAAGAGAGCGAAAAGGATAAGGCAGAGAACAAGGCACAAAAGAAGCTCTCAACTGTTACTGCATGGGAAAACACCAGGAAAGCAGCTATTGAAGCCAAACTGAGAACCATTGAGGAAAAACTGGAGAAGAAAAAGGCGCAATATGCAGAAAAAATGAACAACCAAATTGGTATGGTTCACAAACAAGCAGATGAAAAGAGGGCAATGATTCAAGCAGAGCGAGGGCAAGAACTTCTCAAGGCAGAGGAAACGGCTGCTAAATACCGTGCAACTGGGGGCGTTCCAAAGAAGTTCCTTGGCTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

194

Amino Acids

21.38

Weight (kDa)

7.75

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_N	PF03766	30 - 80	4.6e-12	Remorin, N-terminal region
Remorin_C	PF03763	84 - 189	1.1e-33	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45820 AT3G61260
fragaria_vesca	FvH4_7g13860 FvH4_7g13860
malus_domestica	MD01G1054900.v1.1 MD01G1055000.v1.1 MD07G1140300.v1.1
prunus_persica	Prupe.2G164400_v2.0.a1
pyrus_communis	pycom01g08040 pycom07g13810
rosa_chinensis	RchiOBHm_Chr1g0354071
rosa_laevigata	RLG00000028229
rosa_multiflora	Rmu_co7966600.1_g000001 Rmu_sc0004632.1_g000006 Rmu_sc0006777.1_g000004
rosa_roxburghii	Rroxscaffold_4G00301250
rosa_rugosa	Rorug01G0240800 Rorug01G0240900 Rorug03G0217400
rosa_samantha	Rh1AG251800 Rh1BG223700 Rh1CG236300 Rh1DG250600
rosa_wichuraiana	Rw1G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	3 cut(s)	66, 72, 78
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	116, 244
AgsI	TTSAA	3 cut(s)	164, 368, 488
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	3 cut(s)	149, 322, 362
AluI	AGCT	3 cut(s)	149, 322, 362
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	4 cut(s)	122, 125, 359, 530
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	2 cut(s)	46, 415
AsuC2I	CCSGG	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	43
BbvCI	CCTCAGC	1 cut(s)	202
BbvI	GCAGC	4 cut(s)	109, 112, 371, 517
BceAI	ACGGC	2 cut(s)	140, 543
BciT130I	CCWGG	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	47
BisI	GCNGC	4 cut(s)	123, 126, 360, 531
BlsI	GCNGC	4 cut(s)	124, 127, 361, 532
Bme1390I	CCNGG	2 cut(s)	117, 352
BmiI	GGNNCC	3 cut(s)	45, 51, 177
BmrFI	CCNGG	2 cut(s)	117, 352
BmrI	ACTGGG	1 cut(s)	558
BmsI	GCATC	1 cut(s)	215
BmuI	ACTGGG	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	419
Bpu10I	CCTNAGC	1 cut(s)	202
BpuEI	CTTGAG	2 cut(s)	260, 497
BpuMI	CCSGG	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 244
Bse1I	ACTGG	2 cut(s)	402, 553
Bse3DI	GCAATG	2 cut(s)	186, 486
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	1 cut(s)	571
BseLI	CCNNNNNNNGG	2 cut(s)	116, 244
BseMI	GCAATG	2 cut(s)	186, 486
BseMII	CTCAG	2 cut(s)	216, 368
BseNI	ACTGG	2 cut(s)	402, 553
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	4 cut(s)	109, 112, 371, 517
BseYI	CCCAGC	1 cut(s)	30
BshFI	GGCC	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	43
BsiSI	CCGG	3 cut(s)	41, 47, 117
BslI	CCNNNNNNNGG	2 cut(s)	116, 244
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	3 cut(s)	66, 72, 78
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	2 cut(s)	215, 369
BspLI	GGNNCC	3 cut(s)	45, 51, 177
BspT107I	GGYRCC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	2 cut(s)	186, 486
BsrI	ACTGG	2 cut(s)	402, 553
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	1 cut(s)	214
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	571
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	2 cut(s)	331, 542
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	44
BstDEI	CTNAG	3 cut(s)	192, 202, 377
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	2 cut(s)	46, 415
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 419
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	2 cut(s)	115, 350
BstV1I	GCAGC	4 cut(s)	109, 112, 371, 517
BsuRI	GGCC	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	192
CfoI	GCGC	2 cut(s)	46, 415
CviAII	CATG	4 cut(s)	131, 212, 273, 339
DdeI	CTNAG	3 cut(s)	192, 202, 377
DinI	GGCGCC	1 cut(s)	45
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	571
Eco31I	GGTCTC	1 cut(s)	176
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	350
EcoT14I	CCWWGG	1 cut(s)	571
EgeI	GGCGCC	1 cut(s)	45
EheI	GGCGCC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	4 cut(s)	134, 215, 276, 342
FaiI	YATR	7 cut(s)	132, 213, 257, 274, 340, 420, 449
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FatI	CATG	4 cut(s)	130, 211, 272, 338
FauI	CCCGC	2 cut(s)	79, 85
Fnu4HI	GCNGC	4 cut(s)	123, 126, 360, 531
Fsp4HI	GCNGC	4 cut(s)	123, 126, 360, 531
GlaI	GCGC	2 cut(s)	45, 414
GluI	GCNGC	4 cut(s)	123, 126, 360, 531
GsaI	CCCAGC	1 cut(s)	34
GsuI	CTGGAG	1 cut(s)	419
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	3 cut(s)	41, 47, 117
HhaI	GCGC	2 cut(s)	46, 415
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	4 cut(s)	134, 215, 276, 342
Hin6I	GCGC	2 cut(s)	44, 413
HinP1I	GCGC	2 cut(s)	44, 413
HinfI	GANTC	2 cut(s)	226, 484
HpaII	CCGG	3 cut(s)	41, 47, 117
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188III	TCNNGA	3 cut(s)	16, 179, 218
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	2 cut(s)	92, 161
HpyAV	CCTTC	2 cut(s)	88, 238
HpyCH4III	ACNGT	2 cut(s)	331, 542
HpyCH4V	TGCA	4 cut(s)	233, 338, 422, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 419
HpyF3I	CTNAG	3 cut(s)	192, 202, 377
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	4 cut(s)	134, 215, 276, 342
HspAI	GCGC	2 cut(s)	44, 413
KasI	GGCGCC	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	49, 108
Lsp1109I	GCAGC	4 cut(s)	109, 112, 371, 517
LweI	GCATC	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	223, 331
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	3 cut(s)	17, 290, 415
MluCI	AATT	1 cut(s)	441
Mly113I	GGCGCC	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	8 cut(s)	4, 73, 211, 261, 382, 468, 491, 514
MroXI	GAANNNNTTC	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	135
MspI	CCGG	3 cut(s)	41, 47, 117
MspR9I	CCNGG	2 cut(s)	117, 352
MvaI	CCWGG	1 cut(s)	352
MwoI	GCNNNNNNNGC	2 cut(s)	368, 419
NarI	GGCGCC	1 cut(s)	44
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	4 cut(s)	134, 215, 276, 342
NlaIV	GGNNCC	3 cut(s)	45, 51, 177
NmuCI	GTSAC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	484
PkrI	GCNGC	4 cut(s)	124, 127, 361, 532
PleI	GAGTC	1 cut(s)	220
PluTI	GGCGCC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	350
PspFI	CCCAGC	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	3 cut(s)	45, 51, 177
RseI	CAYNNNNRTG	1 cut(s)	135
SatI	GCNGC	4 cut(s)	123, 126, 360, 531
Sau3AI	GATC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	117, 352
SetI	ASST	8 cut(s)	15, 58, 151, 169, 177, 240, 324, 364
SfaNI	GCATC	1 cut(s)	215
SfoI	GGCGCC	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	2 cut(s)	239, 512
SmoI	CTYRAG	2 cut(s)	239, 512
Sse9I	AATT	1 cut(s)	441
SsiI	CCGC	3 cut(s)	66, 72, 78
SspDI	GGCGCC	1 cut(s)	43
StyD4I	CCNGG	2 cut(s)	115, 350
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	2 cut(s)	331, 542
TaqI	TCGA	3 cut(s)	24, 135, 217
TasI	AATT	1 cut(s)	441
TfiI	GAWTC	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	4 cut(s)	122, 125, 359, 530
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	446, 483
XagI	CCTNNNNNAGG	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.