Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004632.1

Orthogroup ID

OG0007677

Physical Location & Seq

Genomic Coordinates Reverse (-)

48781 .. 52614

Gene Structure 3834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004632.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atggaagaggaggtcaagaaagtcgaaacccagcctactccggcgtcggagccacctttggcctccgcccccgccccaaccgacgagaaggctttgctcccacctccacccggtgctgctgctcatgttgatgactccaaagctctcgccgttgttgaacctgaaaaggttccagagaccattgctaagaagccctcagcatcacatgatcgagagggtgatggtgttcctgatcttagcaagattgggggtggccctgttcatctttcgactcaggtttttctcctcgtgaaacctctaacacgccaaattgttgatccatctgctttcaaccttcacatttgggtgttcgacaagggtctccaggttcaaaagaaggtgggtgtagctcttttgcgtctcacttaccccattgctgatgctgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

142

Amino Acids

15.06

Weight (kDa)

5.53

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45820 AT3G61260
fragaria_vesca	FvH4_7g13860 FvH4_7g13860
malus_domestica	MD01G1054900.v1.1 MD01G1055000.v1.1 MD07G1140300.v1.1
prunus_persica	Prupe.2G164400_v2.0.a1
pyrus_communis	pycom01g08040 pycom07g13810
rosa_chinensis	RchiOBHm_Chr1g0354071
rosa_laevigata	RLG00000028229
rosa_multiflora	Rmu_co7966600.1_g000001 Rmu_sc0004632.1_g000006 Rmu_sc0006777.1_g000004
rosa_roxburghii	Rroxscaffold_4G00301250
rosa_rugosa	Rorug01G0240800 Rorug01G0240900 Rorug03G0217400
rosa_samantha	Rh1AG251800 Rh1BG223700 Rh1CG236300 Rh1DG250600
rosa_wichuraiana	Rw1G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	66, 72
AclWI	GGATC	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	3 cut(s)	158, 331, 371
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	2 cut(s)	143, 389
AluI	AGCT	2 cut(s)	143, 389
Alw26I	GTCTC	3 cut(s)	170, 365, 404
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	2 cut(s)	60, 253
ApeKI	GCWGC	2 cut(s)	116, 119
Asp700I	GAANNNNTTC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	230
BauI	CACGAG	1 cut(s)	287
BbvCI	CCTCAGC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	103, 106
BccI	CCATC	2 cut(s)	215, 328
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	365
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	3 cut(s)	170, 365, 404
BisI	GCNGC	2 cut(s)	117, 120
BlsI	GCNGC	2 cut(s)	118, 121
Bme1390I	CCNGG	2 cut(s)	111, 365
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	51, 171
BmrFI	CCNGG	2 cut(s)	111, 365
BmsI	GCATC	2 cut(s)	209, 409
BoxI	GACNNNNGTC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	196
BpuMI	CCSGG	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	44
BsaI	GGTCTC	2 cut(s)	170, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse3DI	GCAATG	2 cut(s)	180, 411
BseBI	CCWGG	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	2 cut(s)	180, 411
BseMII	CTCAG	2 cut(s)	210, 287
BseRI	GAGGAG	2 cut(s)	23, 275
BseXI	GCAGC	2 cut(s)	103, 106
BseYI	CCCAGC	1 cut(s)	30
BshFI	GGCC	2 cut(s)	62, 255
BsiSI	CCGG	2 cut(s)	41, 111
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	3 cut(s)	170, 365, 404
BsmBI	CGTCTC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	62, 255
Bso31I	GGTCTC	2 cut(s)	170, 365
Bsp143I	GATC	3 cut(s)	208, 232, 316
BspACI	CCGC	2 cut(s)	66, 72
BspANI	GGCC	2 cut(s)	62, 255
BspCNI	CTCAG	2 cut(s)	209, 286
BspLI	GGNNCC	2 cut(s)	51, 171
BspPI	GGATC	1 cut(s)	311
BspTNI	GGTCTC	2 cut(s)	170, 365
BsrDI	GCAATG	2 cut(s)	180, 411
BssMI	GATC	3 cut(s)	208, 232, 316
BssNI	GRCGYC	1 cut(s)	44
BssSI	CACGAG	1 cut(s)	287
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	365
BstACI	GRCGYC	1 cut(s)	44
BstDEI	CTNAG	4 cut(s)	186, 196, 236, 273
BstKTI	GATC	3 cut(s)	211, 235, 319
BstMAI	GTCTC	3 cut(s)	170, 365, 404
BstMBI	GATC	3 cut(s)	208, 232, 316
BstNI	CCWGG	1 cut(s)	365
BstPAI	GACNNNNGTC	1 cut(s)	357
BstSCI	CCNGG	2 cut(s)	109, 363
BstV1I	GCAGC	2 cut(s)	103, 106
BsuRI	GGCC	2 cut(s)	62, 255
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	2 cut(s)	33, 386
CviAII	CATG	2 cut(s)	125, 206
CviJI	RGCY	8 cut(s)	34, 52, 62, 92, 143, 193, 255, 389
CviKI_1	RGCY	8 cut(s)	34, 52, 62, 92, 143, 193, 255, 389
DdeI	CTNAG	4 cut(s)	186, 196, 236, 273
DpnI	GATC	3 cut(s)	210, 234, 318
DpnII	GATC	3 cut(s)	208, 232, 316
DraIII	CACNNNGTG	1 cut(s)	113
EciI	GGCGGA	1 cut(s)	55
Eco31I	GGTCTC	2 cut(s)	170, 365
EcoRII	CCWGG	1 cut(s)	363
Esp3I	CGTCTC	1 cut(s)	404
FaeI	CATG	2 cut(s)	128, 209
FaiI	YATR	2 cut(s)	126, 207
FatI	CATG	2 cut(s)	124, 205
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	117, 120
Fsp4HI	GCNGC	2 cut(s)	117, 120
GluI	GCNGC	2 cut(s)	117, 120
GsaI	CCCAGC	1 cut(s)	34
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	2 cut(s)	62, 255
HapII	CCGG	2 cut(s)	41, 111
HgaI	GACGC	2 cut(s)	33, 386
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	128, 209
HinfI	GANTC	2 cut(s)	134, 271
HpaII	CCGG	2 cut(s)	41, 111
HphI	GGTGA	1 cut(s)	230
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	5 cut(s)	16, 173, 212, 230, 289
Hpy99I	CGWCG	2 cut(s)	49, 86
HpyAV	CCTTC	3 cut(s)	82, 344, 370
HpyF3I	CTNAG	4 cut(s)	186, 196, 236, 273
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	128, 209
Kzo9I	GATC	3 cut(s)	208, 232, 316
LmnI	GCTCC	2 cut(s)	49, 102
Lsp1109I	GCAGC	2 cut(s)	103, 106
LweI	GCATC	2 cut(s)	209, 409
MalI	GATC	3 cut(s)	210, 234, 318
MboI	GATC	3 cut(s)	208, 232, 316
MboII	GAAGA	1 cut(s)	17
MluCI	AATT	1 cut(s)	309
MlyI	GAGTC	2 cut(s)	128, 265
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	7 cut(s)	4, 73, 114, 205, 208, 296, 306
MroXI	GAANNNNTTC	1 cut(s)	168
MslI	CAYNNNNRTG	2 cut(s)	129, 344
MspI	CCGG	2 cut(s)	41, 111
MspR9I	CCNGG	2 cut(s)	111, 365
MvaI	CCWGG	1 cut(s)	365
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	3 cut(s)	208, 232, 316
NlaIII	CATG	2 cut(s)	128, 209
NlaIV	GGNNCC	2 cut(s)	51, 171
PdmI	GAANNNNTTC	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	118, 121
PleI	GAGTC	2 cut(s)	128, 265
PpsI	GAGTC	2 cut(s)	128, 265
PshAI	GACNNNNGTC	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	363
PspFI	CCCAGC	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	51, 171
PspPI	GGNCC	1 cut(s)	254
RseI	CAYNNNNRTG	2 cut(s)	129, 344
SatI	GCNGC	2 cut(s)	117, 120
Sau3AI	GATC	3 cut(s)	208, 232, 316
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	2 cut(s)	128, 265
ScrFI	CCNGG	2 cut(s)	111, 365
SfaNI	GCATC	2 cut(s)	209, 409
SmiMI	CAYNNNNRTG	2 cut(s)	129, 344
Sse9I	AATT	1 cut(s)	309
SsiI	CCGC	2 cut(s)	66, 72
StyD4I	CCNGG	2 cut(s)	109, 363
TaqI	TCGA	4 cut(s)	24, 211, 269, 351
TasI	AATT	1 cut(s)	309
TseI	GCWGC	2 cut(s)	116, 119
TspDTI	ATGAA	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.