MD01G1054900.v1.1

Remorin, N-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0007677
Physical Location & Seq
Reverse (-)
15948588 .. 15949525
938 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1054900.v1.1.491

Sequence Viewer

Length: 234 bp
ATGAATTCTATGCACCTCTTTTCACCTTCTGCACACCGTGAACAATTGGAGAAGAAAAAGGCACAATATGCAGAGAAAATGCAAAACAAAGTTGCCTTACTTCACAAACAAGCAGATGAAAAGAGGGCAATGGTTCTAGCCCAGAAAGGCGAAGAACTTCTTAAGGCTGATGAGACTGCGGCTAAGTACCGTGCAACTGGAAGCATTCCAAAGAAGTTCCTCGGTTGTTTTTAA

Protein Analysis

78

Amino Acids

8.75

Weight (kDa)

9.63

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 13 - 72 5e-17 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 4
AdeI CACNNNGTG 1 cut(s) 38
AfaI GTAC 1 cut(s) 188
AflII CTTAAG 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 137
BfrI CTTAAG 1 cut(s) 161
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 220
BseMI GCAATG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 204
BspACI CCGC 1 cut(s) 179
BspTI CTTAAG 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 135
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 220
Bst4CI ACNGT 2 cut(s) 38, 191
BstAFI CTTAAG 1 cut(s) 161
BstAPI GCANNNNNTGC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 183
BstMAI GTCTC 1 cut(s) 167
BstMWI GCNNNNNNNGC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 187
CviJI RGCY 3 cut(s) 140, 167, 182
CviKI_1 RGCY 3 cut(s) 140, 167, 182
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 183
DraIII CACNNNGTG 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 4
FaiI YATR 2 cut(s) 11, 69
FalI AAGNNNNNCTT 2 cut(s) 144, 176
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 137
GluI GCNGC 1 cut(s) 180
HphI GGTGA 1 cut(s) 15
Hpy166II GTNNAC 1 cut(s) 41
Hpy8I GTNNAC 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 2 cut(s) 38, 191
HpyCH4V TGCA 5 cut(s) 13, 32, 71, 82, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 183
LpnPI CCDG 2 cut(s) 155, 183
MaeI CTAG 1 cut(s) 137
MboII GAAGA 2 cut(s) 64, 164
MfeI CAATTG 1 cut(s) 44
MluCI AATT 2 cut(s) 4, 44
MnlI CCTC 3 cut(s) 26, 117, 230
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 2 cut(s) 162, 232
MspCI CTTAAG 1 cut(s) 161
MunI CAATTG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 68
PctI GAATGC 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 156
PkrI GCNGC 1 cut(s) 181
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 2 cut(s) 162, 232
SatI GCNGC 1 cut(s) 180
SetI ASST 2 cut(s) 18, 28
SgeI CNNG 6 cut(s) 50, 122, 149, 154, 203, 210
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 2 cut(s) 4, 44
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 137
TaaI ACNGT 2 cut(s) 38, 191
TasI AATT 2 cut(s) 4, 44
TauI GCSGC 1 cut(s) 182
Tru1I TTAA 2 cut(s) 162, 232
Tru9I TTAA 2 cut(s) 162, 232
TspDTI ATGAA 2 cut(s) 17, 132
Vha464I CTTAAG 1 cut(s) 161
XapI RAATTY 1 cut(s) 4
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.