Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006777.1

Orthogroup ID

OG0007677

Physical Location & Seq

Genomic Coordinates Forward (+)

13476 .. 15025

Gene Structure 1550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006777.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atggaagaggaggtcaagaaagtcgaaacccagcctactccggcgtcggagccacctttggcctccgcccccgccccaaccgacgagaaggctttgctcccaccaccacccggtgctgctgctcatgttgatgactccaaagctctcgccgttgttgaacctgaaaaggttccagagaccattgctaagaagccctcagcatcacatgatcgagatgtgactcttgcaaaccttgagaaggaaaagagtatgtcttttgtgagggcatgggaagagagcgaaaaggacaaggcagagaacaaggcccaaaagaagctgtcaactgttactgcgtgggaaaacgccaagaaagcagctattgaagccaaactgagaaccatagaggaaaaactggagaagaaaaaggcacaatacgcagaaaaaatgaaaaaccaaattggtatgcttcacaaacaagcagatgaaaagagggcaacgattcaagcagagcgagggcaagaacttctcaaggcagaggaaacggctgctaaataccgtgcaactgggggcgttccaaagaagttccttggctgtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

192

Amino Acids

21.13

Weight (kDa)

8.44

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45820 AT3G61260
fragaria_vesca	FvH4_7g13860 FvH4_7g13860
malus_domestica	MD01G1054900.v1.1 MD01G1055000.v1.1 MD07G1140300.v1.1
prunus_persica	Prupe.2G164400_v2.0.a1
pyrus_communis	pycom01g08040 pycom07g13810
rosa_chinensis	RchiOBHm_Chr1g0354071
rosa_laevigata	RLG00000028229
rosa_multiflora	Rmu_co7966600.1_g000001 Rmu_sc0004632.1_g000006 Rmu_sc0006777.1_g000004
rosa_roxburghii	Rroxscaffold_4G00301250
rosa_rugosa	Rorug01G0240800 Rorug01G0240900 Rorug03G0217400
rosa_samantha	Rh1AG251800 Rh1BG223700 Rh1CG236300 Rh1DG250600
rosa_wichuraiana	Rw1G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	66, 72
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	110, 238
AgsI	TTSAA	3 cut(s)	158, 362, 482
AluBI	AGCT	3 cut(s)	143, 316, 356
AluI	AGCT	3 cut(s)	143, 316, 356
Alw26I	GTCTC	1 cut(s)	170
AoxI	GGCC	2 cut(s)	60, 303
ApeKI	GCWGC	4 cut(s)	116, 119, 353, 524
Asp700I	GAANNNNTTC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	196
BbvI	GCAGC	4 cut(s)	103, 106, 365, 511
BceAI	ACGGC	2 cut(s)	134, 537
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	170
BisI	GCNGC	4 cut(s)	117, 120, 354, 525
BlsI	GCNGC	4 cut(s)	118, 121, 355, 526
Bme1390I	CCNGG	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	2 cut(s)	51, 171
BmrFI	CCNGG	1 cut(s)	111
BmrI	ACTGGG	1 cut(s)	552
BmsI	GCATC	1 cut(s)	209
BmuI	ACTGGG	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	196
BpuEI	CTTGAG	2 cut(s)	254, 491
BpuMI	CCSGG	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 238
Bse1I	ACTGG	2 cut(s)	396, 547
Bse3DI	GCAATG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	565
BseLI	CCNNNNNNNGG	2 cut(s)	110, 238
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	210, 362
BseNI	ACTGG	2 cut(s)	396, 547
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	4 cut(s)	103, 106, 365, 511
BseYI	CCCAGC	1 cut(s)	30
BshFI	GGCC	2 cut(s)	62, 305
BsiSI	CCGG	2 cut(s)	41, 111
BslI	CCNNNNNNNGG	2 cut(s)	110, 238
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	62, 305
Bso31I	GGTCTC	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	2 cut(s)	66, 72
BspANI	GGCC	2 cut(s)	62, 305
BspCNI	CTCAG	2 cut(s)	209, 363
BspLI	GGNNCC	2 cut(s)	51, 171
BspTNI	GGTCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	396, 547
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	1 cut(s)	208
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	565
Bst4CI	ACNGT	2 cut(s)	325, 536
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	44
BstDEI	CTNAG	3 cut(s)	186, 196, 371
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 362, 413
BstSCI	CCNGG	1 cut(s)	109
BstV1I	GCAGC	4 cut(s)	103, 106, 365, 511
BsuRI	GGCC	2 cut(s)	62, 305
Cfr13I	GGNCC	1 cut(s)	304
CseI	GACGC	1 cut(s)	33
CviAII	CATG	3 cut(s)	125, 206, 267
DdeI	CTNAG	3 cut(s)	186, 196, 371
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DraIII	CACNNNGTG	1 cut(s)	113
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	565
Eco31I	GGTCTC	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	565
FaeI	CATG	3 cut(s)	128, 209, 270
FaiI	YATR	6 cut(s)	126, 207, 251, 268, 380, 443
FatI	CATG	3 cut(s)	124, 205, 266
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	4 cut(s)	117, 120, 354, 525
Fsp4HI	GCNGC	4 cut(s)	117, 120, 354, 525
GluI	GCNGC	4 cut(s)	117, 120, 354, 525
GsaI	CCCAGC	1 cut(s)	34
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	62, 305
HapII	CCGG	2 cut(s)	41, 111
HgaI	GACGC	1 cut(s)	33
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	128, 209, 270
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	3 cut(s)	134, 220, 478
HpaII	CCGG	2 cut(s)	41, 111
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	3 cut(s)	16, 173, 212
Hpy8I	GTNNAC	1 cut(s)	321
Hpy99I	CGWCG	2 cut(s)	49, 86
HpyAV	CCTTC	2 cut(s)	82, 232
HpyCH4III	ACNGT	2 cut(s)	325, 536
HpyCH4V	TGCA	2 cut(s)	227, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 362, 413
HpyF3I	CTNAG	3 cut(s)	186, 196, 371
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	128, 209, 270
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	49, 102
LpnPI	CCDG	7 cut(s)	44, 54, 124, 174, 186, 377, 528
Lsp1109I	GCAGC	4 cut(s)	103, 106, 365, 511
LweI	GCATC	1 cut(s)	209
MaeIII	GTNAC	2 cut(s)	217, 325
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	3 cut(s)	17, 284, 409
MluCI	AATT	1 cut(s)	435
MlyI	GAGTC	2 cut(s)	128, 214
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	8 cut(s)	4, 73, 205, 255, 376, 462, 485, 508
MroXI	GAANNNNTTC	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	2 cut(s)	41, 111
MspR9I	CCNGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	350, 362, 413
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	3 cut(s)	128, 209, 270
NlaIV	GGNNCC	2 cut(s)	51, 171
NmuCI	GTSAC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	478
PkrI	GCNGC	4 cut(s)	118, 121, 355, 526
PleI	GAGTC	2 cut(s)	128, 214
PpsI	GAGTC	2 cut(s)	128, 214
PspFI	CCCAGC	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	51, 171
PspPI	GGNCC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	129
SatI	GCNGC	4 cut(s)	117, 120, 354, 525
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	2 cut(s)	128, 214
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	8 cut(s)	15, 58, 145, 163, 171, 234, 318, 358
SfaNI	GCATC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	2 cut(s)	233, 506
SmoI	CTYRAG	2 cut(s)	233, 506
Sse9I	AATT	1 cut(s)	435
SsiI	CCGC	2 cut(s)	66, 72
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	2 cut(s)	325, 536
TaqI	TCGA	2 cut(s)	24, 211
TasI	AATT	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	4 cut(s)	116, 119, 353, 524
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	440, 477
XagI	CCTNNNNNAGG	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.