Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007677

Physical Location & Seq

Genomic Coordinates Forward (+)

15703193 .. 15705103

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13810.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGAGGAACGATGGAGGAGCAGCTGAAGAAGGAGGAGGCAGAACCGTCTCTGCCGGTGGAGCCGCGTCTAGCGGTTGAGCCTCCGCTGGCTTCGGCCCCTAGCGACGTCGCGGTTGCGGAGAAGGCGGCTGTGGTCCCGCCGAGTGATGTGGATGTTAAGGGCGGTGATGATGTCAAGGCTCTCGCCGTAGTTAACAAGGTTCCGGAAACTCTGGTGAAAAAGGCATCAGGAGGATCAATTGACAGAGATATAGCACTTGCAGGACTGGAGAAAGAAAAGAGTATGTCTTTTATCAGGGCATGGGAAGAAAGTGAAAAGTCTAAGGCAGAGAACAAGGCCCAAAAGAAGCTTTCTGATGTTACTGCATGGGAAAGCAGCAGGAAAGCAGCTGTGGAAGCCAAACTCAGAAGCATCGAGGAACAATTGGAGAAGAAAAAGGCACAGTATGCAGAAAAAATGAAAAACAAAGTTGCCTTACTTCAGAAACAAGCAGATGAAAAGAGAGCAATGGTTTTAGCCCAGAAAGGGGAAGAACTTCTCAAGGCTGAAGAGACCGCTGCTAAGTACCGTGCAACCGGAAGCATTCCAAAGAAGTTCCTCGGTTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

205

Amino Acids

22.15

Weight (kDa)

8.42

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45820 AT3G61260
fragaria_vesca	FvH4_7g13860 FvH4_7g13860
malus_domestica	MD01G1054900.v1.1 MD01G1055000.v1.1 MD07G1140300.v1.1
prunus_persica	Prupe.2G164400_v2.0.a1
pyrus_communis	pycom01g08040 pycom07g13810
rosa_chinensis	RchiOBHm_Chr1g0354071
rosa_laevigata	RLG00000028229
rosa_multiflora	Rmu_co7966600.1_g000001 Rmu_sc0004632.1_g000006 Rmu_sc0006777.1_g000004
rosa_roxburghii	Rroxscaffold_4G00301250
rosa_rugosa	Rorug01G0240800 Rorug01G0240900 Rorug03G0217400
rosa_samantha	Rh1AG251800 Rh1BG223700 Rh1CG236300 Rh1DG250600
rosa_wichuraiana	Rw1G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	111
AccII	CGCG	2 cut(s)	67, 113
AccIII	TCCGGA	1 cut(s)	205
AciI	CCGC	9 cut(s)	65, 74, 86, 113, 119, 128, 140, 165, 558
AclWI	GGATC	1 cut(s)	244
AcuI	CTGAAG	3 cut(s)	47, 467, 570
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	2 cut(s)	528, 529
AluBI	AGCT	3 cut(s)	25, 352, 392
AluI	AGCT	3 cut(s)	25, 352, 392
Alw26I	GTCTC	2 cut(s)	54, 548
AlwI	GGATC	1 cut(s)	244
Aor13HI	TCCGGA	1 cut(s)	205
AoxI	GGCC	2 cut(s)	96, 339
ApeKI	GCWGC	4 cut(s)	22, 378, 389, 560
Asp700I	GAANNNNTTC	1 cut(s)	537
AspS9I	GGNCC	3 cut(s)	97, 136, 340
AsuHPI	GGTGA	2 cut(s)	179, 229
AvaII	GGWCC	1 cut(s)	136
BbvI	GCAGC	4 cut(s)	34, 390, 401, 547
BccI	CCATC	1 cut(s)	7
BceAI	ACGGC	1 cut(s)	173
BcoDI	GTCTC	2 cut(s)	54, 548
BfaI	CTAG	2 cut(s)	71, 102
BisI	GCNGC	6 cut(s)	23, 65, 129, 379, 390, 561
BlsI	GCNGC	6 cut(s)	24, 66, 130, 380, 391, 562
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	3 cut(s)	97, 136, 340
BmiI	GGNNCC	4 cut(s)	63, 99, 138, 204
BmsI	GCATC	2 cut(s)	236, 423
BpmI	CTGGAG	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	527
BsaHI	GRCGYC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	601
BsaWI	WCCGGW	2 cut(s)	205, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	528, 529
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	516
BseAI	TCCGGA	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	601
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	2 cut(s)	528, 529
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	421
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	2 cut(s)	32, 50
BseXI	GCAGC	4 cut(s)	34, 390, 401, 547
Bsh1236I	CGCG	2 cut(s)	67, 113
BshFI	GGCC	2 cut(s)	98, 341
BsiSI	CCGG	3 cut(s)	56, 206, 579
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	528, 529
BsmAI	GTCTC	2 cut(s)	54, 548
BsmBI	CGTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	585
BsnI	GGCC	2 cut(s)	98, 341
Bso31I	GGTCTC	1 cut(s)	548
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	9 cut(s)	65, 74, 86, 113, 119, 128, 140, 165, 558
BspANI	GGCC	2 cut(s)	98, 341
BspCNI	CTCAG	1 cut(s)	420
BspEI	TCCGGA	1 cut(s)	205
BspFNI	CGCG	2 cut(s)	67, 113
BspLI	GGNNCC	4 cut(s)	63, 99, 138, 204
BspPI	GGATC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	516
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	273
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	601
BssMI	GATC	1 cut(s)	236
BssNI	GRCGYC	1 cut(s)	108
Bst4CI	ACNGT	3 cut(s)	48, 447, 572
Bst6I	CTCTTC	1 cut(s)	546
BstACI	GRCGYC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	3 cut(s)	324, 407, 564
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	2 cut(s)	67, 113
BstKTI	GATC	1 cut(s)	239
BstMAI	GTCTC	2 cut(s)	54, 548
BstMBI	GATC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 125, 398, 449
BstUI	CGCG	2 cut(s)	67, 113
BstV1I	GCAGC	4 cut(s)	34, 390, 401, 547
BsuRI	GGCC	2 cut(s)	98, 341
BtsCI	GGATG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	3 cut(s)	97, 136, 340
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	2 cut(s)	303, 369
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	3 cut(s)	324, 407, 564
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	136
Eco57I	CTGAAG	3 cut(s)	47, 467, 570
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	2 cut(s)	306, 372
FaiI	YATR	5 cut(s)	254, 287, 304, 370, 450
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	2 cut(s)	302, 368
FauI	CCCGC	1 cut(s)	147
Fnu4HI	GCNGC	6 cut(s)	23, 65, 129, 379, 390, 561
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	6 cut(s)	23, 65, 129, 379, 390, 561
FspBI	CTAG	2 cut(s)	71, 102
GluI	GCNGC	6 cut(s)	23, 65, 129, 379, 390, 561
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	98, 341
HapII	CCGG	3 cut(s)	56, 206, 579
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	306, 372
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	350
HpaI	GTTAAC	1 cut(s)	196
HpaII	CCGG	3 cut(s)	56, 206, 579
HphI	GGTGA	2 cut(s)	179, 229
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	358, 410, 486
Hpy188III	TCNNGA	2 cut(s)	206, 231
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	2 cut(s)	110, 113
HpyAV	CCTTC	2 cut(s)	25, 118
HpyCH4III	ACNGT	3 cut(s)	48, 447, 572
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	4 cut(s)	263, 368, 452, 575
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 125, 398, 449
HpyF3I	CTNAG	3 cut(s)	324, 407, 564
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	306, 372
Kpn2I	TCCGGA	1 cut(s)	205
KspAI	GTTAAC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	236
LmnI	GCTCC	2 cut(s)	19, 61
Lsp1109I	GCAGC	4 cut(s)	34, 390, 401, 547
LweI	GCATC	2 cut(s)	236, 423
MaeI	CTAG	2 cut(s)	71, 102
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	1 cut(s)	238
MboI	GATC	1 cut(s)	236
MboII	GAAGA	5 cut(s)	40, 320, 445, 545, 563
MfeI	CAATTG	2 cut(s)	240, 425
MluCI	AATT	2 cut(s)	240, 425
MnlI	CCTC	7 cut(s)	10, 28, 31, 93, 227, 412, 611
MroI	TCCGGA	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	2 cut(s)	159, 195
MspA1I	CMGCKG	4 cut(s)	25, 88, 392, 560
MspI	CCGG	3 cut(s)	56, 206, 579
MunI	CAATTG	2 cut(s)	240, 425
Mva1269I	GAATGC	1 cut(s)	585
MvnI	CGCG	2 cut(s)	67, 113
MwoI	GCNNNNNNNGC	4 cut(s)	61, 125, 398, 449
NdeII	GATC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	306, 372
NlaIV	GGNNCC	4 cut(s)	63, 99, 138, 204
NmeAIII	GCCGAG	1 cut(s)	168
PctI	GAATGC	1 cut(s)	585
PdmI	GAANNNNTTC	1 cut(s)	537
PkrI	GCNGC	6 cut(s)	24, 66, 130, 380, 391, 562
PspN4I	GGNNCC	4 cut(s)	63, 99, 138, 204
PspPI	GGNCC	3 cut(s)	97, 136, 340
PvuII	CAGCTG	2 cut(s)	25, 392
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SaqAI	TTAA	2 cut(s)	159, 195
SatI	GCNGC	6 cut(s)	23, 65, 129, 379, 390, 561
Sau3AI	GATC	1 cut(s)	236
Sau96I	GGNCC	3 cut(s)	97, 136, 340
SetI	ASST	5 cut(s)	27, 111, 204, 354, 394
SfaNI	GCATC	2 cut(s)	236, 423
SinI	GGWCC	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	2 cut(s)	240, 425
SsiI	CCGC	9 cut(s)	65, 74, 86, 113, 119, 128, 140, 165, 558
SspMI	CTAG	2 cut(s)	71, 102
TaaI	ACNGT	3 cut(s)	48, 447, 572
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	417
TasI	AATT	2 cut(s)	240, 425
TauI	GCSGC	2 cut(s)	67, 131
Tru1I	TTAA	2 cut(s)	159, 195
Tru9I	TTAA	2 cut(s)	159, 195
TseI	GCWGC	4 cut(s)	22, 378, 389, 560
TspDTI	ATGAA	2 cut(s)	476, 513
VpaK11BI	GGWCC	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	2 cut(s)	71, 102
ZraI	GACGTC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.