Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7966600.1

Orthogroup ID

OG0007677

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 384

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7966600.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 214 bp

atggaagaggaggtcaagaaagtcgaaacccagcctactccggcgtcggagccacctttggcctccgcccccgccccaaccgacgagaaggctttgctcccacctccacccggtgctgctgctcatgttgatgactccaaagctctcgccgttgttgaacctgaaaaggttccagagaccattgctaagaagccctcagcatcacatgatcgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

71

Amino Acids

7.4

Weight (kDa)

4.85

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45820 AT3G61260
fragaria_vesca	FvH4_7g13860 FvH4_7g13860
malus_domestica	MD01G1054900.v1.1 MD01G1055000.v1.1 MD07G1140300.v1.1
prunus_persica	Prupe.2G164400_v2.0.a1
pyrus_communis	pycom01g08040 pycom07g13810
rosa_chinensis	RchiOBHm_Chr1g0354071
rosa_laevigata	RLG00000028229
rosa_multiflora	Rmu_co7966600.1_g000001 Rmu_sc0004632.1_g000006 Rmu_sc0006777.1_g000004
rosa_roxburghii	Rroxscaffold_4G00301250
rosa_rugosa	Rorug01G0240800 Rorug01G0240900 Rorug03G0217400
rosa_samantha	Rh1AG251800 Rh1BG223700 Rh1CG236300 Rh1DG250600
rosa_wichuraiana	Rw1G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	66, 72
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	158
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	116, 119
Asp700I	GAANNNNTTC	1 cut(s)	168
AsuC2I	CCSGG	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	103, 106
BceAI	ACGGC	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	170
BisI	GCNGC	2 cut(s)	117, 120
BlsI	GCNGC	2 cut(s)	118, 121
Bme1390I	CCNGG	1 cut(s)	111
BmiI	GGNNCC	2 cut(s)	51, 171
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	209
Bpu10I	CCTNAGC	1 cut(s)	196
BpuMI	CCSGG	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	103, 106
BseYI	CCCAGC	1 cut(s)	30
BshFI	GGCC	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	41, 111
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	2 cut(s)	66, 72
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	51, 171
BspTNI	GGTCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	180
BssMI	GATC	1 cut(s)	208
BssNI	GRCGYC	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	186, 196
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	103, 106
BsuRI	GGCC	1 cut(s)	62
CseI	GACGC	1 cut(s)	33
CviAII	CATG	2 cut(s)	125, 206
CviJI	RGCY	6 cut(s)	34, 52, 62, 92, 143, 193
CviKI_1	RGCY	6 cut(s)	34, 52, 62, 92, 143, 193
DdeI	CTNAG	2 cut(s)	186, 196
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DraIII	CACNNNGTG	1 cut(s)	113
EciI	GGCGGA	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	170
FaeI	CATG	2 cut(s)	128, 209
FaiI	YATR	2 cut(s)	126, 207
FatI	CATG	2 cut(s)	124, 205
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	117, 120
Fsp4HI	GCNGC	2 cut(s)	117, 120
GluI	GCNGC	2 cut(s)	117, 120
GsaI	CCCAGC	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	2 cut(s)	41, 111
HgaI	GACGC	1 cut(s)	33
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	128, 209
HinfI	GANTC	1 cut(s)	134
HpaII	CCGG	2 cut(s)	41, 111
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	2 cut(s)	16, 173
Hpy99I	CGWCG	2 cut(s)	49, 86
HpyAV	CCTTC	1 cut(s)	82
HpyF3I	CTNAG	2 cut(s)	186, 196
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	128, 209
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	49, 102
LpnPI	CCDG	5 cut(s)	44, 54, 124, 174, 186
Lsp1109I	GCAGC	2 cut(s)	103, 106
LweI	GCATC	1 cut(s)	209
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	4 cut(s)	4, 73, 114, 205
MroXI	GAANNNNTTC	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	2 cut(s)	41, 111
MspR9I	CCNGG	1 cut(s)	111
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	2 cut(s)	128, 209
NlaIV	GGNNCC	2 cut(s)	51, 171
PdmI	GAANNNNTTC	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	118, 121
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	51, 171
RseI	CAYNNNNRTG	1 cut(s)	129
SatI	GCNGC	2 cut(s)	117, 120
Sau3AI	GATC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	6 cut(s)	15, 58, 106, 145, 163, 171
SfaNI	GCATC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	129
SsiI	CCGC	2 cut(s)	66, 72
StyD4I	CCNGG	1 cut(s)	109
TaqI	TCGA	2 cut(s)	24, 211
TseI	GCWGC	2 cut(s)	116, 119
XmnI	GAANNNNTTC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.