Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0007677

Physical Location & Seq

Genomic Coordinates Reverse (-)

15949527 .. 15950940

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1055000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGAGCAACGATGGAAGAGCAGCTGAAGAAGGCGGAGGCCGAGCCGTCTCTGCCGGTGGAGCCGCCCCCGGCTTCGGCCCCTGTCGACGTTGCCGTTGAGAAGAAGGCGGATGTGGTTCCGCCGAGTGATGTGGATGTCAAGAGTGGCGATGATACCAAAGCTCTCACCGTAGTTGACAAGGTTCCAGAAACTCTGGAGAAAAAGGCTTCAGGAGGATCAATTGACAGAGATATAGCACTTGCACAACTGGAGAAAGAAAAGAGTATGTCTTTTATCAGGGCATGGGAAGAAAGTGAAAAGGCTAAGGCAGAGAACAAGGCCCAAAAGAAACTTTCTGATGTTACTGCATGGGAAAGCAGCAGGAAAGCAGCTGTGGAAGCCAAACTCAGAAGCATTGAGGTAAAACTTCTTTTGTTTTTTCGCTTTGTTCTAGATACACCCATGGAATGTTGGATGTTACGGTCCATCCAACGCCCTAGTTTTAATTTAATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

167

Amino Acids

18.33

Weight (kDa)

5.27

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_N	PF03766	29 - 84	2.3e-15	Remorin, N-terminal region
Remorin_C	PF03763	88 - 137	2.4e-12	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45820 AT3G61260
fragaria_vesca	FvH4_7g13860 FvH4_7g13860
malus_domestica	MD01G1054900.v1.1 MD01G1055000.v1.1 MD07G1140300.v1.1
prunus_persica	Prupe.2G164400_v2.0.a1
pyrus_communis	pycom01g08040 pycom07g13810
rosa_chinensis	RchiOBHm_Chr1g0354071
rosa_laevigata	RLG00000028229
rosa_multiflora	Rmu_co7966600.1_g000001 Rmu_sc0004632.1_g000006 Rmu_sc0006777.1_g000004
rosa_roxburghii	Rroxscaffold_4G00301250
rosa_rugosa	Rorug01G0240800 Rorug01G0240900 Rorug03G0217400
rosa_samantha	Rh1AG251800 Rh1BG223700 Rh1CG236300 Rh1DG250600
rosa_wichuraiana	Rw1G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	4 cut(s)	35, 65, 110, 122
AclWI	GGATC	1 cut(s)	226
AcuI	CTGAAG	2 cut(s)	47, 195
AfiI	CCNNNNNNNGG	1 cut(s)	76
AluBI	AGCT	3 cut(s)	25, 164, 374
AluI	AGCT	3 cut(s)	25, 164, 374
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	3 cut(s)	39, 78, 321
ApeKI	GCWGC	3 cut(s)	22, 360, 371
AspS9I	GGNCC	3 cut(s)	79, 322, 465
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	34, 372, 383
BccI	CCATC	2 cut(s)	7, 476
BceAI	ACGGC	2 cut(s)	31, 80
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	2 cut(s)	434, 480
BisI	GCNGC	4 cut(s)	23, 65, 361, 372
BlsI	GCNGC	4 cut(s)	24, 66, 362, 373
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	465
BmgT120I	GGNCC	3 cut(s)	79, 322, 465
BmiI	GGNNCC	4 cut(s)	63, 81, 120, 186
BmrFI	CCNGG	1 cut(s)	71
BpmI	CTGGAG	2 cut(s)	218, 272
Bpu10I	CCTNAGC	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	69, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	69, 444
BseGI	GGATG	4 cut(s)	118, 142, 462, 468
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	403
BseNI	ACTGG	1 cut(s)	255
BseXI	GCAGC	3 cut(s)	34, 372, 383
BshFI	GGCC	3 cut(s)	41, 80, 323
BsiSI	CCGG	2 cut(s)	56, 71
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	54
BsmBI	CGTCTC	1 cut(s)	54
BsnI	GGCC	3 cut(s)	41, 80, 323
Bsp143I	GATC	1 cut(s)	218
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	4 cut(s)	35, 65, 110, 122
BspANI	GGCC	3 cut(s)	41, 80, 323
BspCNI	CTCAG	1 cut(s)	402
BspLI	GGNNCC	4 cut(s)	63, 81, 120, 186
BspPI	GGATC	1 cut(s)	226
BspQI	GCTCTTC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	255
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	69, 444
BssMI	GATC	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	444
Bst4CI	ACNGT	2 cut(s)	172, 465
Bst6I	CTCTTC	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	306, 389
BstDSI	CCRYGG	1 cut(s)	444
BstF5I	GGATG	4 cut(s)	118, 142, 462, 468
BstKTI	GATC	1 cut(s)	221
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 61, 380
BstSCI	CCNGG	1 cut(s)	69
BstV1I	GCAGC	3 cut(s)	34, 372, 383
BsuRI	GGCC	3 cut(s)	41, 80, 323
BtgI	CCRYGG	1 cut(s)	444
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	4 cut(s)	118, 142, 462, 468
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	3 cut(s)	79, 322, 465
CviAII	CATG	3 cut(s)	285, 351, 445
DdeI	CTNAG	2 cut(s)	306, 389
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EciI	GGCGGA	3 cut(s)	50, 111, 125
Eco130I	CCWWGG	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	465
Eco57I	CTGAAG	2 cut(s)	47, 195
EcoT14I	CCWWGG	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	444
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	3 cut(s)	288, 354, 448
FaiI	YATR	5 cut(s)	236, 269, 286, 352, 446
FatI	CATG	3 cut(s)	284, 350, 444
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	4 cut(s)	23, 65, 361, 372
FokI	GGATG	4 cut(s)	125, 149, 455, 469
Fsp4HI	GCNGC	4 cut(s)	23, 65, 361, 372
FspBI	CTAG	2 cut(s)	434, 480
GluI	GCNGC	4 cut(s)	23, 65, 361, 372
GsuI	CTGGAG	2 cut(s)	218, 272
HaeIII	GGCC	3 cut(s)	41, 80, 323
HapII	CCGG	2 cut(s)	56, 71
Hin1II	CATG	3 cut(s)	288, 354, 448
HincII	GTYRAC	2 cut(s)	88, 178
HindII	GTYRAC	2 cut(s)	88, 178
HpaII	CCGG	2 cut(s)	56, 71
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	2 cut(s)	88, 178
Hpy188I	TCNGA	2 cut(s)	340, 392
Hpy188III	TCNNGA	6 cut(s)	142, 188, 197, 213, 434, 498
Hpy8I	GTNNAC	2 cut(s)	88, 178
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	25, 100
HpyCH4III	ACNGT	2 cut(s)	172, 465
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	2 cut(s)	245, 350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 61, 380
HpyF3I	CTNAG	2 cut(s)	306, 389
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	288, 354, 448
Kzo9I	GATC	1 cut(s)	218
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	5, 61
LpnPI	CCDG	9 cut(s)	69, 84, 96, 182, 198, 201, 236, 265, 349
Lsp1109I	GCAGC	3 cut(s)	34, 372, 383
MaeI	CTAG	2 cut(s)	434, 480
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	343, 459
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	4 cut(s)	29, 40, 115, 302
MfeI	CAATTG	1 cut(s)	222
MluCI	AATT	3 cut(s)	222, 487, 492
MmeI	TCCRAC	2 cut(s)	434, 496
MnlI	CCTC	3 cut(s)	31, 209, 394
MseI	TTAA	2 cut(s)	486, 491
MspA1I	CMGCKG	2 cut(s)	25, 374
MspI	CCGG	2 cut(s)	56, 71
MspR9I	CCNGG	1 cut(s)	71
MunI	CAATTG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	52, 61, 380
NciI	CCSGG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	3 cut(s)	288, 354, 448
NlaIV	GGNNCC	4 cut(s)	63, 81, 120, 186
NmeAIII	GCCGAG	2 cut(s)	67, 150
PciSI	GCTCTTC	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PkrI	GCNGC	4 cut(s)	24, 66, 362, 373
PspN4I	GGNNCC	4 cut(s)	63, 81, 120, 186
PspPI	GGNCC	3 cut(s)	79, 322, 465
PvuII	CAGCTG	2 cut(s)	25, 374
SalI	GTCGAC	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	486, 491
SatI	GCNGC	4 cut(s)	23, 65, 361, 372
Sau3AI	GATC	1 cut(s)	218
Sau96I	GGNCC	3 cut(s)	79, 322, 465
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	6 cut(s)	27, 93, 166, 186, 376, 405
SinI	GGWCC	1 cut(s)	465
Sse9I	AATT	3 cut(s)	222, 487, 492
SsiI	CCGC	4 cut(s)	35, 65, 110, 122
SspMI	CTAG	2 cut(s)	434, 480
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	2 cut(s)	172, 465
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	87
TasI	AATT	3 cut(s)	222, 487, 492
TauI	GCSGC	1 cut(s)	67
Tru1I	TTAA	2 cut(s)	486, 491
Tru9I	TTAA	2 cut(s)	486, 491
TseI	GCWGC	3 cut(s)	22, 360, 371
VpaK11BI	GGWCC	1 cut(s)	465
XbaI	TCTAGA	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	2 cut(s)	434, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.