Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007677

Physical Location & Seq

Genomic Coordinates Reverse (-)

21412032 .. 21413605

Gene Structure 1574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G164400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGAGCAACAATGGAAGAGGAGCTGAAGAAGGCAGAACCCGAGCCTGCTTTACTGGCTGAGCCTCCTCTGGCCTCGGCCCCAAACGACCTCGCTGAGGAGAAGGCCGTGGTGCCTCCGCCGCGCGAGGTTGATGTCAAGGGAGTTGATGATACAAAAGCCCTTGCCGTAGTTGAGAAGGCTCCAGAAACAGAGGTGAAAAAGCCTTCTGGAGGATCAATTGATAGAGATGTAGCTCTTTCACATCTTGAAAAAGAAAAGAGTTTGTCTTTTATCAGGGCATGGGAAGAAAGTGAAAAGGCTAAGGCAGAGAACAAGGCCCAAAAGAAACTTTCTGATATTACTGCATGGGAAAACAGCAGGAAAGCAGCTGCGGAAGCCAAACTGAGACGCATGGAGGAAAAATTGGAGAAGAAAAAGACACAATACGCAGAAAAAATGAAAAACCAAGTTGCTCTTCTTCACAAACAAGCAGATGAAAAGAGGGCTTTGACTATAGCCAATCGCGGGGAAGAATTCCTCAAGGCGGATGAGACCGCTGCTAAATACCGTGCAACTGGAAGTATTCCAAAGAAGTTCCTTGGCTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

198

Amino Acids

21.82

Weight (kDa)

7.72

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45820 AT3G61260
fragaria_vesca	FvH4_7g13860 FvH4_7g13860
malus_domestica	MD01G1054900.v1.1 MD01G1055000.v1.1 MD07G1140300.v1.1
prunus_persica	Prupe.2G164400_v2.0.a1
pyrus_communis	pycom01g08040 pycom07g13810
rosa_chinensis	RchiOBHm_Chr1g0354071
rosa_laevigata	RLG00000028229
rosa_multiflora	Rmu_co7966600.1_g000001 Rmu_sc0004632.1_g000006 Rmu_sc0006777.1_g000004
rosa_roxburghii	Rroxscaffold_4G00301250
rosa_rugosa	Rorug01G0240800 Rorug01G0240900 Rorug03G0217400
rosa_samantha	Rh1AG251800 Rh1BG223700 Rh1CG236300 Rh1DG250600
rosa_wichuraiana	Rw1G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	112
AccII	CGCG	3 cut(s)	124, 126, 507
AciI	CCGC	6 cut(s)	119, 122, 374, 507, 527, 537
AclWI	GGATC	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	47
AfiI	CCNNNNNNNGG	4 cut(s)	97, 212, 507, 526
AgsI	TTSAA	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AluBI	AGCT	3 cut(s)	25, 236, 371
AluI	AGCT	3 cut(s)	25, 236, 371
Alw26I	GTCTC	2 cut(s)	382, 527
AlwI	GGATC	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	4 cut(s)	72, 78, 105, 318
ApeKI	GCWGC	4 cut(s)	368, 371, 539, 585
ApoI	RAATTY	1 cut(s)	515
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	79, 319
AsuHPI	GGTGA	1 cut(s)	208
AvaI	CYCGRG	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	112
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	4 cut(s)	358, 380, 526, 572
BceAI	ACGGC	2 cut(s)	92, 152
BcoDI	GTCTC	2 cut(s)	382, 527
BfmI	CTRYAG	1 cut(s)	495
BisI	GCNGC	5 cut(s)	122, 369, 372, 540, 586
BlpI	GCTNAGC	1 cut(s)	60
BlsI	GCNGC	5 cut(s)	123, 370, 373, 541, 587
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	79, 319
BmiI	GGNNCC	3 cut(s)	81, 114, 183
BpmI	CTGGAG	2 cut(s)	168, 231
Bpu10I	CCTNAGC	2 cut(s)	96, 303
Bpu1102I	GCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	506
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	3 cut(s)	75, 108, 580
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 212, 507, 526
Bse1I	ACTGG	2 cut(s)	60, 562
BseDI	CCNNGG	3 cut(s)	75, 108, 580
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	4 cut(s)	97, 212, 507, 526
BseMII	CTCAG	3 cut(s)	51, 87, 377
BseNI	ACTGG	2 cut(s)	60, 562
BseRI	GAGGAG	3 cut(s)	35, 57, 113
BseXI	GCAGC	4 cut(s)	358, 380, 526, 572
Bsh1236I	CGCG	3 cut(s)	124, 126, 507
BshFI	GGCC	4 cut(s)	74, 80, 107, 320
BshNI	GGYRCC	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	41
BslI	CCNNNNNNNGG	4 cut(s)	97, 212, 507, 526
BsmAI	GTCTC	2 cut(s)	382, 527
BsmBI	CGTCTC	1 cut(s)	382
BsnI	GGCC	4 cut(s)	74, 80, 107, 320
Bso31I	GGTCTC	1 cut(s)	527
BsoBI	CYCGRG	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	215
Bsp1720I	GCTNAGC	1 cut(s)	60
BspACI	CCGC	6 cut(s)	119, 122, 374, 507, 527, 537
BspANI	GGCC	4 cut(s)	74, 80, 107, 320
BspCNI	CTCAG	3 cut(s)	52, 88, 378
BspFNI	CGCG	3 cut(s)	124, 126, 507
BspLI	GGNNCC	3 cut(s)	81, 114, 183
BspPI	GGATC	1 cut(s)	223
BspQI	GCTCTTC	1 cut(s)	462
BspT107I	GGYRCC	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	527
BsrI	ACTGG	2 cut(s)	60, 562
BssECI	CCNNGG	3 cut(s)	75, 108, 580
BssMI	GATC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	580
Bst4CI	ACNGT	1 cut(s)	551
Bst6I	CTCTTC	2 cut(s)	12, 462
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	4 cut(s)	60, 96, 303, 386
BstDSI	CCRYGG	1 cut(s)	108
BstENI	CCTNNNNNAGG	2 cut(s)	95, 210
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	3 cut(s)	124, 126, 507
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	1 cut(s)	218
BstMAI	GTCTC	2 cut(s)	382, 527
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 121, 377
BstSFI	CTRYAG	1 cut(s)	495
BstUI	CGCG	3 cut(s)	124, 126, 507
BstV1I	GCAGC	4 cut(s)	358, 380, 526, 572
BsuRI	GGCC	4 cut(s)	74, 80, 107, 320
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	535
Cac8I	GCNNGC	1 cut(s)	48
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	79, 319
CseI	GACGC	1 cut(s)	399
CviAII	CATG	3 cut(s)	282, 348, 394
DdeI	CTNAG	4 cut(s)	60, 96, 303, 386
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
Eam1104I	CTCTTC	2 cut(s)	12, 462
EarI	CTCTTC	2 cut(s)	12, 462
EciI	GGCGGA	2 cut(s)	108, 542
Eco130I	CCWWGG	1 cut(s)	580
Eco31I	GGTCTC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	41
EcoNI	CCTNNNNNAGG	2 cut(s)	95, 210
EcoRI	GAATTC	1 cut(s)	515
EcoT14I	CCWWGG	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	580
Esp3I	CGTCTC	1 cut(s)	382
FaeI	CATG	3 cut(s)	285, 351, 397
FaiI	YATR	4 cut(s)	283, 349, 395, 497
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FatI	CATG	3 cut(s)	281, 347, 393
FauI	CCCGC	1 cut(s)	500
Fnu4HI	GCNGC	5 cut(s)	122, 369, 372, 540, 586
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	5 cut(s)	122, 369, 372, 540, 586
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	5 cut(s)	122, 369, 372, 540, 586
GsuI	CTGGAG	2 cut(s)	168, 231
HaeIII	GGCC	4 cut(s)	74, 80, 107, 320
HgaI	GACGC	1 cut(s)	399
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	3 cut(s)	285, 351, 397
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HphI	GGTGA	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	3 cut(s)	185, 210, 248
HpyAV	CCTTC	4 cut(s)	25, 97, 172, 216
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4V	TGCA	2 cut(s)	347, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 121, 377
HpyF3I	CTNAG	4 cut(s)	60, 96, 303, 386
Hsp92II	CATG	3 cut(s)	285, 351, 397
HspAI	GCGC	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	215
LguI	GCTCTTC	1 cut(s)	462
LmnI	GCTCC	3 cut(s)	5, 22, 187
LpnPI	CCDG	8 cut(s)	41, 56, 60, 195, 198, 262, 346, 543
Lsp1109I	GCAGC	4 cut(s)	358, 380, 526, 572
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	7 cut(s)	29, 40, 299, 424, 449, 452, 524
MfeI	CAATTG	1 cut(s)	219
MluCI	AATT	3 cut(s)	219, 404, 515
MspA1I	CMGCKG	2 cut(s)	371, 539
MunI	CAATTG	1 cut(s)	219
MvnI	CGCG	3 cut(s)	124, 126, 507
MwoI	GCNNNNNNNGC	3 cut(s)	56, 121, 377
NdeII	GATC	1 cut(s)	215
NlaIII	CATG	3 cut(s)	285, 351, 397
NlaIV	GGNNCC	3 cut(s)	81, 114, 183
NmeAIII	GCCGAG	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	462
PkrI	GCNGC	5 cut(s)	123, 370, 373, 541, 587
PspN4I	GGNNCC	3 cut(s)	81, 114, 183
PspPI	GGNCC	2 cut(s)	79, 319
PvuII	CAGCTG	1 cut(s)	371
SapI	GCTCTTC	1 cut(s)	462
SatI	GCNGC	5 cut(s)	122, 369, 372, 540, 586
Sau3AI	GATC	1 cut(s)	215
Sau96I	GGNCC	2 cut(s)	79, 319
SetI	ASST	6 cut(s)	27, 93, 132, 198, 238, 373
SfcI	CTRYAG	1 cut(s)	495
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	3 cut(s)	219, 404, 515
SsiI	CCGC	6 cut(s)	119, 122, 374, 507, 527, 537
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	1 cut(s)	551
TasI	AATT	3 cut(s)	219, 404, 515
TauI	GCSGC	1 cut(s)	124
TseI	GCWGC	4 cut(s)	368, 371, 539, 585
TspDTI	ATGAA	2 cut(s)	455, 492
XagI	CCTNNNNNAGG	2 cut(s)	95, 210
XapI	RAATTY	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.