Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007677

Physical Location & Seq

Genomic Coordinates Forward (+)

20342013 .. 20343565

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028229

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAAGAGGAGGTCAAGAAAGTCGAAACAAAGCCTACTCCGGCGCCGGAGCCACCTTTGGCCTCCGCCCCCGCCCCAACCGACGAGAAGGCTTTGCTCCCACCACCACCCGGTGCTGCTGCTCATGTTGATGACTCCAAAGCTGTCGCCGTCGTTGAACCTGAAAAGGTTCCAGAGGCCATTGCTAAGAAGCCCTCAGCATCACATGATCGAGATGTGACTCTTGCAAACCTTGAGAAGGAAAAGAGTATGTCTTTTGTGAGGGCATGGGAAGACAGCGAAAAGGACAAGGCAGAGAACAAGGCCCAAAAGAAGCTCTCAACTGTTACTGCATGGGAAAACGCCAAGAAAGCAGCTATTGAAGCCAAACTGAGAACCATGGAGGAAAAACTGGAGAAGAAAAAGGCACAATACGCAGAAAAAATGAAAAACCAAATTGGTATGCTTCACAAACAAGCAGATGAAAAGAGGGCAATGATTCAAGCAGAGCGAGGGCAAGAACTTCTCAAGGCAGAGGAAACGGCTGCTAAATACCGTGCAACTGGGGGCGTTCCAAAGAAGTTCCTTGGCTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

193

Amino Acids

21.13

Weight (kDa)

8.74

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_N	PF03766	28 - 78	2.6e-12	Remorin, N-terminal region
Remorin_C	PF03763	82 - 187	5.6e-33	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45820 AT3G61260
fragaria_vesca	FvH4_7g13860 FvH4_7g13860
malus_domestica	MD01G1054900.v1.1 MD01G1055000.v1.1 MD07G1140300.v1.1
prunus_persica	Prupe.2G164400_v2.0.a1
pyrus_communis	pycom01g08040 pycom07g13810
rosa_chinensis	RchiOBHm_Chr1g0354071
rosa_laevigata	RLG00000028229
rosa_multiflora	Rmu_co7966600.1_g000001 Rmu_sc0004632.1_g000006 Rmu_sc0006777.1_g000004
rosa_roxburghii	Rroxscaffold_4G00301250
rosa_rugosa	Rorug01G0240800 Rorug01G0240900 Rorug03G0217400
rosa_samantha	Rh1AG251800 Rh1BG223700 Rh1CG236300 Rh1DG250600
rosa_wichuraiana	Rw1G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	2 cut(s)	66, 72
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	110, 238
AgsI	TTSAA	3 cut(s)	158, 362, 482
AluBI	AGCT	3 cut(s)	143, 316, 356
AluI	AGCT	3 cut(s)	143, 316, 356
AoxI	GGCC	3 cut(s)	60, 177, 303
ApeKI	GCWGC	4 cut(s)	116, 119, 353, 524
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	279
BbvCI	CCTCAGC	1 cut(s)	196
BbvI	GCAGC	4 cut(s)	103, 106, 365, 511
BceAI	ACGGC	2 cut(s)	134, 537
BcnI	CCSGG	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	47
BisI	GCNGC	4 cut(s)	117, 120, 354, 525
BlsI	GCNGC	4 cut(s)	118, 121, 355, 526
Bme1390I	CCNGG	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	3 cut(s)	45, 51, 171
BmrFI	CCNGG	1 cut(s)	111
BmrI	ACTGGG	1 cut(s)	552
BmsI	GCATC	1 cut(s)	209
BmuI	ACTGGG	1 cut(s)	552
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	196
BpuEI	CTTGAG	2 cut(s)	254, 491
BpuMI	CCSGG	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	378, 565
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 238
Bse1I	ACTGG	2 cut(s)	396, 547
Bse3DI	GCAATG	2 cut(s)	180, 480
BseDI	CCNNGG	2 cut(s)	378, 565
BseLI	CCNNNNNNNGG	2 cut(s)	110, 238
BseMI	GCAATG	2 cut(s)	180, 480
BseMII	CTCAG	2 cut(s)	210, 362
BseNI	ACTGG	2 cut(s)	396, 547
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	4 cut(s)	103, 106, 365, 511
BshFI	GGCC	3 cut(s)	62, 179, 305
BshNI	GGYRCC	1 cut(s)	43
BsiSI	CCGG	3 cut(s)	41, 47, 111
BslI	CCNNNNNNNGG	2 cut(s)	110, 238
BsnI	GGCC	3 cut(s)	62, 179, 305
Bsp143I	GATC	1 cut(s)	208
Bsp19I	CCATGG	1 cut(s)	378
BspACI	CCGC	2 cut(s)	66, 72
BspANI	GGCC	3 cut(s)	62, 179, 305
BspCNI	CTCAG	2 cut(s)	209, 363
BspLI	GGNNCC	3 cut(s)	45, 51, 171
BspT107I	GGYRCC	1 cut(s)	43
BsrDI	GCAATG	2 cut(s)	180, 480
BsrI	ACTGG	2 cut(s)	396, 547
BssECI	CCNNGG	2 cut(s)	378, 565
BssMI	GATC	1 cut(s)	208
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	2 cut(s)	378, 565
Bst4CI	ACNGT	2 cut(s)	325, 536
BstACI	GRCGYC	1 cut(s)	44
BstDEI	CTNAG	3 cut(s)	186, 196, 371
BstDSI	CCRYGG	1 cut(s)	378
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 362, 413
BstSCI	CCNGG	1 cut(s)	109
BstV1I	GCAGC	4 cut(s)	103, 106, 365, 511
BstV2I	GAAGAC	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	62, 179, 305
BtgI	CCRYGG	1 cut(s)	378
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	304
CviAII	CATG	5 cut(s)	125, 206, 267, 333, 379
DdeI	CTNAG	3 cut(s)	186, 196, 371
DinI	GGCGCC	1 cut(s)	45
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DraIII	CACNNNGTG	1 cut(s)	113
EciI	GGCGGA	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	378, 565
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoT14I	CCWWGG	2 cut(s)	378, 565
EgeI	GGCGCC	1 cut(s)	45
EheI	GGCGCC	1 cut(s)	45
ErhI	CCWWGG	2 cut(s)	378, 565
FaeI	CATG	5 cut(s)	128, 209, 270, 336, 382
FaiI	YATR	7 cut(s)	126, 207, 251, 268, 334, 380, 443
FatI	CATG	5 cut(s)	124, 205, 266, 332, 378
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	4 cut(s)	117, 120, 354, 525
Fsp4HI	GCNGC	4 cut(s)	117, 120, 354, 525
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	4 cut(s)	117, 120, 354, 525
GsuI	CTGGAG	1 cut(s)	413
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	3 cut(s)	62, 179, 305
HapII	CCGG	3 cut(s)	41, 47, 111
HhaI	GCGC	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	5 cut(s)	128, 209, 270, 336, 382
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	3 cut(s)	134, 220, 478
HpaII	CCGG	3 cut(s)	41, 47, 111
Hpy188III	TCNNGA	3 cut(s)	16, 173, 212
Hpy99I	CGWCG	2 cut(s)	86, 155
HpyAV	CCTTC	2 cut(s)	82, 232
HpyCH4III	ACNGT	2 cut(s)	325, 536
HpyCH4V	TGCA	3 cut(s)	227, 332, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 362, 413
HpyF3I	CTNAG	3 cut(s)	186, 196, 371
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	5 cut(s)	128, 209, 270, 336, 382
HspAI	GCGC	1 cut(s)	44
KasI	GGCGCC	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	49, 102
LpnPI	CCDG	7 cut(s)	54, 60, 124, 174, 186, 377, 528
Lsp1109I	GCAGC	4 cut(s)	103, 106, 365, 511
LweI	GCATC	1 cut(s)	209
MaeIII	GTNAC	2 cut(s)	217, 325
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	3 cut(s)	17, 284, 409
MluCI	AATT	1 cut(s)	435
Mly113I	GGCGCC	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	128, 214
MnlI	CCTC	9 cut(s)	4, 73, 169, 205, 255, 376, 462, 485, 508
MroXI	GAANNNNTTC	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	3 cut(s)	41, 47, 111
MspR9I	CCNGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	350, 362, 413
NarI	GGCGCC	1 cut(s)	44
NciI	CCSGG	1 cut(s)	111
NcoI	CCATGG	1 cut(s)	378
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	5 cut(s)	128, 209, 270, 336, 382
NlaIV	GGNNCC	3 cut(s)	45, 51, 171
NmuCI	GTSAC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	478
PkrI	GCNGC	4 cut(s)	118, 121, 355, 526
PleI	GAGTC	2 cut(s)	128, 214
PluTI	GGCGCC	1 cut(s)	47
PpsI	GAGTC	2 cut(s)	128, 214
PspN4I	GGNNCC	3 cut(s)	45, 51, 171
PspPI	GGNCC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	129
SatI	GCNGC	4 cut(s)	117, 120, 354, 525
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	2 cut(s)	128, 214
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	8 cut(s)	15, 58, 145, 163, 171, 234, 318, 358
SfaNI	GCATC	1 cut(s)	209
SfoI	GGCGCC	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	2 cut(s)	233, 506
SmoI	CTYRAG	2 cut(s)	233, 506
Sse9I	AATT	1 cut(s)	435
SsiI	CCGC	2 cut(s)	66, 72
SspDI	GGCGCC	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	2 cut(s)	378, 565
TaaI	ACNGT	2 cut(s)	325, 536
TaqI	TCGA	2 cut(s)	24, 211
TasI	AATT	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	4 cut(s)	116, 119, 353, 524
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	440, 477
XagI	CCTNNNNNAGG	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.