Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007677

Physical Location & Seq

Genomic Coordinates Reverse (-)

34598148 .. 34598959

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0240800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAAATTTCTGAGCCCTGATGACTTTTGTGTGGATGCAGGGCTTGCGGCGTGTGCTCATTTGGGGGCTCTTTGGAAGGGGAAGTGGATTCATGAGTATGTTAGAAAGAGGAAAGGGTTGGATTCGGATGTGTTTATTGGGGCGGCGCTTGTTGATATGCATGCCAAGTGTGGTTGTATTGATTTCGCTGTCGAGGCGAAAAGGAATGTGGTGTCGTGGTCAGCCATGATTGAACGTCTGGGGTGCATGGTAGATGATGGAATCAAGCCTGATGGTGTTGTCCTTCTTGGAGTACTAATGGCATGTACTGATGCAGGATTGCTTGAGAAGGGTCGATTATGTGATGCATTTGAGCTTATTAGAAGAATGCCCATGAAGCCGCTTGCTTCTGTGTGGGGTGCTTTATTGAGTGGGTGCCGTATCCATAATAATGTAGGTGTCCGGAGAAGTGAAGATGCACTTAGGATAAGGAAGATGATTGGTGAAAAAGGAATCAAGAAGACACCAGGCTGTAGCATGCTAGAGGTGGCTGGGAAGGTTAATGAATTTGTTTCAGGAGATGTATTCCATTCACATCGTGTTCAGATATGTACAATGTTGGATCTAATATCTGCTGACTCAGTTCAGGACCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

211

Amino Acids

23.05

Weight (kDa)

8.03

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45820 AT3G61260
fragaria_vesca	FvH4_7g13860 FvH4_7g13860
malus_domestica	MD01G1054900.v1.1 MD01G1055000.v1.1 MD07G1140300.v1.1
prunus_persica	Prupe.2G164400_v2.0.a1
pyrus_communis	pycom01g08040 pycom07g13810
rosa_chinensis	RchiOBHm_Chr1g0354071
rosa_laevigata	RLG00000028229
rosa_multiflora	Rmu_co7966600.1_g000001 Rmu_sc0004632.1_g000006 Rmu_sc0006777.1_g000004
rosa_roxburghii	Rroxscaffold_4G00301250
rosa_rugosa	Rorug01G0240800 Rorug01G0240900 Rorug03G0217400
rosa_samantha	Rh1AG251800 Rh1BG223700 Rh1CG236300 Rh1DG250600
rosa_wichuraiana	Rw1G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	414
AccIII	TCCGGA	1 cut(s)	441
AciI	CCGC	3 cut(s)	47, 143, 380
AclWI	GGATC	1 cut(s)	609
AcsI	RAATTY	2 cut(s)	5, 545
AdeI	CACNNNGTG	1 cut(s)	578
AfaI	GTAC	3 cut(s)	294, 307, 592
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw21I	GWGCWC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	609
Aor13HI	TCCGGA	1 cut(s)	441
ApoI	RAATTY	2 cut(s)	5, 545
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	628
AsuHPI	GGTGA	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	628
BanI	GGYRCC	1 cut(s)	414
BanII	GRGCYC	2 cut(s)	17, 70
BbsI	GAAGAC	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	58
BccI	CCATC	2 cut(s)	251, 266
BceAI	ACGGC	1 cut(s)	402
BciT130I	CCWGG	1 cut(s)	507
BciVI	GTATCC	1 cut(s)	431
BfaI	CTAG	1 cut(s)	521
BfmI	CTRYAG	1 cut(s)	511
BfoI	RGCGCY	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	431
BisI	GCNGC	3 cut(s)	48, 144, 380
BlsI	GCNGC	3 cut(s)	49, 145, 381
BmcAI	AGTACT	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	507
Bme18I	GGWCC	1 cut(s)	628
BmgT120I	GGNCC	1 cut(s)	628
BmiI	GGNNCC	2 cut(s)	416, 630
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	4 cut(s)	25, 301, 334, 445
BpiI	GAAGAC	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	344
BsaWI	WCCGGW	1 cut(s)	441
BseAI	TCCGGA	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	507
BseGI	GGATG	2 cut(s)	40, 133
BseMII	CTCAG	1 cut(s)	633
BseYI	CCCAGC	1 cut(s)	530
BshNI	GGYRCC	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	442
BsmI	GAATGC	1 cut(s)	372
Bsp1286I	GDGCHC	3 cut(s)	17, 58, 70
Bsp13I	TCCGGA	1 cut(s)	441
Bsp1407I	TGTACA	1 cut(s)	590
Bsp143I	GATC	1 cut(s)	601
BspACI	CCGC	3 cut(s)	47, 143, 380
BspCNI	CTCAG	1 cut(s)	632
BspEI	TCCGGA	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	416, 630
BspPI	GGATC	1 cut(s)	609
BspT107I	GGYRCC	1 cut(s)	414
BsrGI	TGTACA	1 cut(s)	590
BssMI	GATC	1 cut(s)	601
Bst2UI	CCWGG	1 cut(s)	507
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstAUI	TGTACA	1 cut(s)	590
BstC8I	GCNNGC	4 cut(s)	45, 162, 384, 518
BstDEI	CTNAG	3 cut(s)	11, 461, 619
BstF5I	GGATG	2 cut(s)	40, 133
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	1 cut(s)	604
BstMBI	GATC	1 cut(s)	601
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 53, 194, 376
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	3 cut(s)	164, 306, 520
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	1 cut(s)	511
BstV2I	GAAGAC	1 cut(s)	506
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
BsuI	GTATCC	1 cut(s)	431
BtsCI	GGATG	2 cut(s)	40, 133
Cac8I	GCNNGC	4 cut(s)	45, 162, 384, 518
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	628
Csp6I	GTAC	3 cut(s)	293, 306, 591
CviAII	CATG	7 cut(s)	92, 161, 226, 247, 303, 373, 517
CviJI	RGCY	9 cut(s)	15, 43, 68, 224, 268, 355, 379, 510, 530
CviKI_1	RGCY	9 cut(s)	15, 43, 68, 224, 268, 355, 379, 510, 530
CviQI	GTAC	3 cut(s)	293, 306, 591
DdeI	CTNAG	3 cut(s)	11, 461, 619
DpnI	GATC	1 cut(s)	603
DpnII	GATC	1 cut(s)	601
DraIII	CACNNNGTG	1 cut(s)	578
Eco24I	GRGCYC	2 cut(s)	17, 70
Eco47I	GGWCC	1 cut(s)	628
EcoO109I	RGGNCCY	1 cut(s)	628
EcoRII	CCWGG	1 cut(s)	505
EcoT22I	ATGCAT	2 cut(s)	162, 349
EcoT38I	GRGCYC	2 cut(s)	17, 70
FaeI	CATG	7 cut(s)	95, 164, 229, 250, 306, 376, 520
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FatI	CATG	7 cut(s)	91, 160, 225, 246, 302, 372, 516
Fnu4HI	GCNGC	3 cut(s)	48, 144, 380
FokI	GGATG	2 cut(s)	47, 140
FriOI	GRGCYC	2 cut(s)	17, 70
Fsp4HI	GCNGC	3 cut(s)	48, 144, 380
FspBI	CTAG	1 cut(s)	521
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	3 cut(s)	48, 144, 380
GsaI	CCCAGC	1 cut(s)	534
HaeII	RGCGCY	1 cut(s)	149
HapII	CCGG	1 cut(s)	442
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	7 cut(s)	95, 164, 229, 250, 306, 376, 520
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	5 cut(s)	88, 122, 261, 492, 617
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	1 cut(s)	494
Hpy188I	TCNGA	3 cut(s)	12, 127, 585
Hpy188III	TCNNGA	5 cut(s)	92, 442, 496, 555, 626
HpyAV	CCTTC	4 cut(s)	70, 293, 322, 529
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	6 cut(s)	38, 160, 246, 314, 347, 458
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 53, 194, 376
HpyF3I	CTNAG	3 cut(s)	11, 461, 619
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	7 cut(s)	95, 164, 229, 250, 306, 376, 520
HspAI	GCGC	1 cut(s)	146
Kpn2I	TCCGGA	1 cut(s)	441
Kzo9I	GATC	1 cut(s)	601
LweI	GCATC	4 cut(s)	25, 301, 334, 445
MaeI	CTAG	1 cut(s)	521
MaeII	ACGT	1 cut(s)	235
MalI	GATC	1 cut(s)	603
MboI	GATC	1 cut(s)	601
MboII	GAAGA	4 cut(s)	375, 464, 484, 511
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	3 cut(s)	17, 58, 70
MluCI	AATT	2 cut(s)	5, 545
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	2 cut(s)	99, 579
MnlI	CCTC	3 cut(s)	102, 187, 517
Mph1103I	ATGCAT	2 cut(s)	162, 349
MroI	TCCGGA	1 cut(s)	441
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	2 cut(s)	96, 429
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	4 cut(s)	44, 53, 194, 376
NdeII	GATC	1 cut(s)	601
NlaIII	CATG	7 cut(s)	95, 164, 229, 250, 306, 376, 520
NlaIV	GGNNCC	2 cut(s)	416, 630
NsiI	ATGCAT	2 cut(s)	162, 349
NspI	RCATGY	3 cut(s)	164, 306, 520
PaeI	GCATGC	2 cut(s)	164, 520
PagI	TCATGA	1 cut(s)	91
PctI	GAATGC	1 cut(s)	372
PfeI	GAWTC	4 cut(s)	88, 122, 261, 492
PkrI	GCNGC	3 cut(s)	49, 145, 381
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
PpuMI	RGGWCCY	1 cut(s)	628
Psp5II	RGGWCCY	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	2 cut(s)	416, 630
PspPI	GGNCC	1 cut(s)	628
PspPPI	RGGWCCY	1 cut(s)	628
PsuI	RGATCY	1 cut(s)	601
RsaI	GTAC	3 cut(s)	294, 307, 592
RsaNI	GTAC	3 cut(s)	293, 306, 591
RseI	CAYNNNNRTG	2 cut(s)	96, 429
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	3 cut(s)	48, 144, 380
Sau3AI	GATC	1 cut(s)	601
Sau96I	GGNCC	1 cut(s)	628
ScaI	AGTACT	1 cut(s)	294
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	3 cut(s)	17, 58, 70
SetI	ASST	5 cut(s)	238, 357, 439, 528, 540
SfaNI	GCATC	4 cut(s)	25, 301, 334, 445
SfcI	CTRYAG	1 cut(s)	511
SinI	GGWCC	1 cut(s)	628
SmiMI	CAYNNNNRTG	2 cut(s)	96, 429
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SphI	GCATGC	2 cut(s)	164, 520
Sse9I	AATT	2 cut(s)	5, 545
SsiI	CCGC	3 cut(s)	47, 143, 380
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	505
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	2 cut(s)	192, 334
TasI	AATT	2 cut(s)	5, 545
TatI	WGTACW	3 cut(s)	292, 305, 590
TauI	GCSGC	3 cut(s)	50, 146, 382
TfiI	GAWTC	4 cut(s)	88, 122, 261, 492
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TspDTI	ATGAA	4 cut(s)	17, 80, 389, 558
VpaK11BI	GGWCC	1 cut(s)	628
XapI	RAATTY	2 cut(s)	5, 545
XceI	RCATGY	3 cut(s)	164, 306, 520
XspI	CTAG	1 cut(s)	521
ZrmI	AGTACT	1 cut(s)	294
Zsp2I	ATGCAT	2 cut(s)	162, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.