Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007677

Physical Location & Seq

Genomic Coordinates Forward (+)

34599183 .. 34599425

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0240900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCATGGCCAGATGAGGCTCGGAGCTGGTGAAGTGGGCTCTGATCAGGGTGTTGTAGATGTAGGTGTTGGGGGTCTGGACTTAGTTGAAGAGAAAGGAGGCGTATCGGAGATTGCCGGAGTCGGAGAGCGCGCAGAAGGCGATGAGTTTGCTGACGGCGTAGTTGTTGAGGTGGAGGCCGTGGCTTATGAAGACAGCGTGGGTGGGTTTGAGAGTGTGCATGTTGGTGCAGCGTTGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

80

Amino Acids

7.92

Weight (kDa)

4.05

Isoelectric Point (pI)

20.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45820 AT3G61260
fragaria_vesca	FvH4_7g13860 FvH4_7g13860
malus_domestica	MD01G1054900.v1.1 MD01G1055000.v1.1 MD07G1140300.v1.1
prunus_persica	Prupe.2G164400_v2.0.a1
pyrus_communis	pycom01g08040 pycom07g13810
rosa_chinensis	RchiOBHm_Chr1g0354071
rosa_laevigata	RLG00000028229
rosa_multiflora	Rmu_co7966600.1_g000001 Rmu_sc0004632.1_g000006 Rmu_sc0006777.1_g000004
rosa_roxburghii	Rroxscaffold_4G00301250
rosa_rugosa	Rorug01G0240800 Rorug01G0240900 Rorug03G0217400
rosa_samantha	Rh1AG251800 Rh1BG223700 Rh1CG236300 Rh1DG250600
rosa_wichuraiana	Rw1G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	7
AgsI	TTSAA	1 cut(s)	89
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
AoxI	GGCC	2 cut(s)	7, 177
ApeKI	GCWGC	1 cut(s)	230
AspLEI	GCGC	2 cut(s)	132, 134
AsuHPI	GGTGA	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	198
BceAI	ACGGC	2 cut(s)	164, 172
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BclI	TGATCA	1 cut(s)	43
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	180
BsePI	GCGCGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	9, 179
BsiSI	CCGG	1 cut(s)	117
BsnI	GGCC	2 cut(s)	9, 179
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	43
BspANI	GGCC	2 cut(s)	9, 179
BspFNI	CGCG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	180
BssHII	GCGCGC	1 cut(s)	130
BssMI	GATC	1 cut(s)	43
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	82
BstDSI	CCRYGG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	132, 134
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	224
BstUI	CGCG	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	9, 179
BtgI	CCRYGG	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	2 cut(s)	132, 134
CviAII	CATG	2 cut(s)	5, 221
CviJI	RGCY	7 cut(s)	9, 19, 26, 39, 179, 185, 240
CviKI_1	RGCY	7 cut(s)	9, 19, 26, 39, 179, 185, 240
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	41
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	41
FaeI	CATG	2 cut(s)	8, 224
FaiI	YATR	3 cut(s)	6, 189, 222
FatI	CATG	2 cut(s)	4, 220
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	231
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	231
GlaI	GCGC	2 cut(s)	131, 133
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	9, 179
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	2 cut(s)	132, 134
Hin1II	CATG	2 cut(s)	8, 224
Hin6I	GCGC	2 cut(s)	130, 132
HinP1I	GCGC	2 cut(s)	130, 132
HinfI	GANTC	1 cut(s)	120
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	41
Hpy188I	TCNGA	4 cut(s)	23, 43, 109, 125
Hpy188III	TCNNGA	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	131
HpyCH4V	TGCA	3 cut(s)	4, 220, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	82
Hsp92II	CATG	2 cut(s)	8, 224
HspAI	GCGC	2 cut(s)	130, 132
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	5 cut(s)	12, 23, 32, 62, 130
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	2 cut(s)	101, 203
MhlI	GDGCHC	1 cut(s)	41
MlsI	TGGCCA	1 cut(s)	9
MluNI	TGGCCA	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	4 cut(s)	9, 92, 163, 169
Mox20I	TGGCCA	1 cut(s)	9
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	9
MspI	CCGG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	2 cut(s)	8, 224
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	224
PauI	GCGCGC	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PteI	GCGCGC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	225
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	3 cut(s)	28, 67, 174
SmiMI	CAYNNNNRTG	1 cut(s)	225
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	204
XceI	RCATGY	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.