Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007677

Physical Location & Seq

Genomic Coordinates Reverse (-)

46719040 .. 46724034

Gene Structure 4995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG251800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGAGCTAAAATGGAAGAGGAGGTCAAGAAAGTCGAAACCCAGCCTACTCCGGCGCCGGAGCCACCTTTGGCCTCCGCCCCCGCCCCAACCGACGAGAAGGCTTTGCTCCCACCACCACCCGGTGCTGCTGCTCATGTTGATGACTCCAAAGCTCTCGCCGTCGTTGAACCTGAAAAGGTTCCAGAGACCATTGCTAAGAAGCCCTCAGCATCACATGATCGAGATGTGACTCTTGCAAACCTTGAGAAGGAAAAGAGTATGTCTTTTGTGAGGGCATGGGAAGACAGCGAAAAGGACAAGGCAGAGAACAAGGCCCAAAAGAAGCTGTCAACTGTTACTGCATGGGAAAACGCCAAGAAAGCAGCTATTGAAGCCAAACTGAGAACCATGGAGGTAAATTCTAATTCCATTTCTAGTTTCTGTTTGCTTCTAGATACATCAAAAGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

151

Amino Acids

16.32

Weight (kDa)

5.35

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_N	PF03766	32 - 82	5.7e-13	Remorin, N-terminal region
Remorin_C	PF03763	86 - 135	1.2e-11	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45820 AT3G61260
fragaria_vesca	FvH4_7g13860 FvH4_7g13860
malus_domestica	MD01G1054900.v1.1 MD01G1055000.v1.1 MD07G1140300.v1.1
prunus_persica	Prupe.2G164400_v2.0.a1
pyrus_communis	pycom01g08040 pycom07g13810
rosa_chinensis	RchiOBHm_Chr1g0354071
rosa_laevigata	RLG00000028229
rosa_multiflora	Rmu_co7966600.1_g000001 Rmu_sc0004632.1_g000006 Rmu_sc0006777.1_g000004
rosa_roxburghii	Rroxscaffold_4G00301250
rosa_rugosa	Rorug01G0240800 Rorug01G0240900 Rorug03G0217400
rosa_samantha	Rh1AG251800 Rh1BG223700 Rh1CG236300 Rh1DG250600
rosa_wichuraiana	Rw1G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AciI	CCGC	2 cut(s)	78, 84
AcsI	RAATTY	1 cut(s)	400
AcyI	GRCGYC	1 cut(s)	56
AdeI	CACNNNGTG	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	122, 250
AgsI	TTSAA	2 cut(s)	170, 374
AluBI	AGCT	4 cut(s)	8, 155, 328, 368
AluI	AGCT	4 cut(s)	8, 155, 328, 368
Alw26I	GTCTC	1 cut(s)	182
AoxI	GGCC	2 cut(s)	72, 315
ApeKI	GCWGC	3 cut(s)	128, 131, 365
ApoI	RAATTY	1 cut(s)	400
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	208
BbvI	GCAGC	3 cut(s)	115, 118, 377
BceAI	ACGGC	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	417, 434
BfoI	RGCGCY	1 cut(s)	59
BisI	GCNGC	3 cut(s)	129, 132, 366
BlsI	GCNGC	3 cut(s)	130, 133, 367
Bme1390I	CCNGG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	3 cut(s)	57, 63, 183
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 250
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	390
BseLI	CCNNNNNNNGG	2 cut(s)	122, 250
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	222, 374
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	3 cut(s)	115, 118, 377
BseYI	CCCAGC	1 cut(s)	42
BshFI	GGCC	2 cut(s)	74, 317
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	3 cut(s)	53, 59, 123
BslI	CCNNNNNNNGG	2 cut(s)	122, 250
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	74, 317
Bso31I	GGTCTC	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	220
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	2 cut(s)	78, 84
BspANI	GGCC	2 cut(s)	74, 317
BspCNI	CTCAG	2 cut(s)	221, 375
BspLI	GGNNCC	3 cut(s)	57, 63, 183
BspT107I	GGYRCC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	1 cut(s)	220
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	56
BstDEI	CTNAG	3 cut(s)	198, 208, 383
BstDSI	CCRYGG	1 cut(s)	390
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 374
BstSCI	CCNGG	1 cut(s)	121
BstV1I	GCAGC	3 cut(s)	115, 118, 377
BstV2I	GAAGAC	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	74, 317
BtgI	CCRYGG	1 cut(s)	390
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	316
CviAII	CATG	5 cut(s)	137, 218, 279, 345, 391
DdeI	CTNAG	3 cut(s)	198, 208, 383
DinI	GGCGCC	1 cut(s)	57
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
DraIII	CACNNNGTG	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	390
Eco31I	GGTCTC	1 cut(s)	182
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	390
EgeI	GGCGCC	1 cut(s)	57
EheI	GGCGCC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	5 cut(s)	140, 221, 282, 348, 394
FaiI	YATR	6 cut(s)	138, 219, 263, 280, 346, 392
FatI	CATG	5 cut(s)	136, 217, 278, 344, 390
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	3 cut(s)	129, 132, 366
Fsp4HI	GCNGC	3 cut(s)	129, 132, 366
FspBI	CTAG	2 cut(s)	417, 434
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	3 cut(s)	129, 132, 366
GsaI	CCCAGC	1 cut(s)	46
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	74, 317
HapII	CCGG	3 cut(s)	53, 59, 123
HhaI	GCGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	5 cut(s)	140, 221, 282, 348, 394
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HinfI	GANTC	2 cut(s)	146, 232
HpaII	CCGG	3 cut(s)	53, 59, 123
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188III	TCNNGA	4 cut(s)	28, 185, 224, 434
Hpy8I	GTNNAC	1 cut(s)	333
Hpy99I	CGWCG	2 cut(s)	98, 167
HpyAV	CCTTC	2 cut(s)	94, 244
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4V	TGCA	2 cut(s)	239, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 374
HpyF3I	CTNAG	3 cut(s)	198, 208, 383
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	5 cut(s)	140, 221, 282, 348, 394
HspAI	GCGC	1 cut(s)	56
KasI	GGCGCC	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	3 cut(s)	5, 61, 114
LpnPI	CCDG	6 cut(s)	56, 66, 72, 136, 186, 198
Lsp1109I	GCAGC	3 cut(s)	115, 118, 377
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	2 cut(s)	417, 434
MaeIII	GTNAC	2 cut(s)	229, 337
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	2 cut(s)	29, 296
MluCI	AATT	2 cut(s)	400, 406
Mly113I	GGCGCC	1 cut(s)	56
MlyI	GAGTC	2 cut(s)	140, 226
MnlI	CCTC	6 cut(s)	13, 16, 85, 217, 267, 388
MroXI	GAANNNNTTC	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	3 cut(s)	53, 59, 123
MspR9I	CCNGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	362, 374
NarI	GGCGCC	1 cut(s)	56
NciI	CCSGG	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	5 cut(s)	140, 221, 282, 348, 394
NlaIV	GGNNCC	3 cut(s)	57, 63, 183
NmuCI	GTSAC	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	180
PkrI	GCNGC	3 cut(s)	130, 133, 367
PleI	GAGTC	2 cut(s)	140, 226
PluTI	GGCGCC	1 cut(s)	59
PpsI	GAGTC	2 cut(s)	140, 226
PspFI	CCCAGC	1 cut(s)	42
PspN4I	GGNNCC	3 cut(s)	57, 63, 183
PspPI	GGNCC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	141
SatI	GCNGC	3 cut(s)	129, 132, 366
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	1 cut(s)	316
SchI	GAGTC	2 cut(s)	140, 226
ScrFI	CCNGG	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	221
SfoI	GGCGCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	400, 406
SsiI	CCGC	2 cut(s)	78, 84
SspDI	GGCGCC	1 cut(s)	55
SspMI	CTAG	2 cut(s)	417, 434
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	337
TaqI	TCGA	2 cut(s)	36, 223
TasI	AATT	2 cut(s)	400, 406
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	3 cut(s)	128, 131, 365
Tsp45I	GTSAC	1 cut(s)	229
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	400
XbaI	TCTAGA	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	2 cut(s)	417, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.