Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007677

Physical Location & Seq

Genomic Coordinates Reverse (-)

9027252 .. 9029184

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGAGCAACGATGGAAGAGCAGCTGAAGAAGGCAGAGGCCGAGCCGTCTCTGCCAGTGGAGCCGCCCCCGGCTTCGGCCCCTGTCGACGTTGCCGTTGAGAAGAAAGCGGATGTGGTTCCGCCGAGTGATGTGGATGTCAAGGGTGGCGATGATACCAAAGCTCTCACCGTAGTTGACAAGGTTCCAGAAACTGTGGAGAAAAAGGCTTCAGGAGGATCAATTGACAGAGATATAGCACTTGCACAACTGGAGAAGGAAAAGAGTATGTCTTTTGTCAGGGCATGGGAAGAAAGTGAAAAGGCTAAGGCAGAGAACAAGGCCCAAAAGAAACTTTCTGATGTTACTGCATGGGAAAGCAGCAGGAAAGCAGCTGTGGAAGCCAAACTCAGAAGCATTGAGGAACAATTGGAGAAGAAAAAGGCACAATATGCAGAGAAAATGCAAAACAAAGTTGCCTTACTTCACAAACAAGCAGATGAAAAGAGGGCAATGGTTCTAGCCCAGAAAGGCGAAGAACTTCTTAAGGCTGATGAGACCGCGGCTAAGTACCGTGCAACTGGAAGCATTCCAAAGAAGTTCCTCGGTTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

199

Amino Acids

21.62

Weight (kDa)

6.67

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45820 AT3G61260
fragaria_vesca	FvH4_7g13860 FvH4_7g13860
malus_domestica	MD01G1054900.v1.1 MD01G1055000.v1.1 MD07G1140300.v1.1
prunus_persica	Prupe.2G164400_v2.0.a1
pyrus_communis	pycom01g08040 pycom07g13810
rosa_chinensis	RchiOBHm_Chr1g0354071
rosa_laevigata	RLG00000028229
rosa_multiflora	Rmu_co7966600.1_g000001 Rmu_sc0004632.1_g000006 Rmu_sc0006777.1_g000004
rosa_roxburghii	Rroxscaffold_4G00301250
rosa_rugosa	Rorug01G0240800 Rorug01G0240900 Rorug03G0217400
rosa_samantha	Rh1AG251800 Rh1BG223700 Rh1CG236300 Rh1DG250600
rosa_wichuraiana	Rw1G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	1 cut(s)	542
AciI	CCGC	5 cut(s)	65, 110, 122, 540, 542
AclWI	GGATC	1 cut(s)	226
AcuI	CTGAAG	2 cut(s)	47, 195
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflII	CTTAAG	1 cut(s)	524
AluBI	AGCT	3 cut(s)	25, 164, 374
AluI	AGCT	3 cut(s)	25, 164, 374
Alw26I	GTCTC	2 cut(s)	54, 530
AlwI	GGATC	1 cut(s)	226
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	39, 78, 321
ApeKI	GCWGC	3 cut(s)	22, 360, 371
Asp700I	GAANNNNTTC	1 cut(s)	519
AspS9I	GGNCC	2 cut(s)	79, 322
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	160
BbvI	GCAGC	3 cut(s)	34, 372, 383
BccI	CCATC	1 cut(s)	7
BceAI	ACGGC	2 cut(s)	31, 80
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	54, 530
BfaI	CTAG	1 cut(s)	500
BfrI	CTTAAG	1 cut(s)	524
BisI	GCNGC	5 cut(s)	23, 65, 361, 372, 543
BlsI	GCNGC	5 cut(s)	24, 66, 362, 373, 544
Bme1390I	CCNGG	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	79, 322
BmiI	GGNNCC	4 cut(s)	63, 81, 120, 186
BmrFI	CCNGG	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	3 cut(s)	69, 540, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	3 cut(s)	56, 255, 565
Bse3DI	GCAATG	1 cut(s)	498
BseDI	CCNNGG	3 cut(s)	69, 540, 583
BseGI	GGATG	2 cut(s)	118, 142
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	403
BseNI	ACTGG	3 cut(s)	56, 255, 565
BseXI	GCAGC	3 cut(s)	34, 372, 383
Bsh1236I	CGCG	1 cut(s)	542
BshFI	GGCC	3 cut(s)	41, 80, 323
BsiSI	CCGG	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	2 cut(s)	54, 530
BsmBI	CGTCTC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	567
BsnI	GGCC	3 cut(s)	41, 80, 323
Bso31I	GGTCTC	1 cut(s)	530
Bsp143I	GATC	1 cut(s)	218
BspACI	CCGC	5 cut(s)	65, 110, 122, 540, 542
BspANI	GGCC	3 cut(s)	41, 80, 323
BspCNI	CTCAG	1 cut(s)	402
BspFNI	CGCG	1 cut(s)	542
BspLI	GGNNCC	4 cut(s)	63, 81, 120, 186
BspPI	GGATC	1 cut(s)	226
BspQI	GCTCTTC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	530
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	3 cut(s)	56, 255, 565
BssECI	CCNNGG	3 cut(s)	69, 540, 583
BssMI	GATC	1 cut(s)	218
Bst4CI	ACNGT	3 cut(s)	172, 196, 554
Bst6I	CTCTTC	1 cut(s)	12
BstAFI	CTTAAG	1 cut(s)	524
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstDEI	CTNAG	3 cut(s)	306, 389, 546
BstDSI	CCRYGG	1 cut(s)	540
BstF5I	GGATG	2 cut(s)	118, 142
BstFNI	CGCG	1 cut(s)	542
BstKTI	GATC	1 cut(s)	221
BstMAI	GTCTC	2 cut(s)	54, 530
BstMBI	GATC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 61, 380, 431
BstSCI	CCNGG	1 cut(s)	69
BstUI	CGCG	1 cut(s)	542
BstV1I	GCAGC	3 cut(s)	34, 372, 383
BsuRI	GGCC	3 cut(s)	41, 80, 323
BtgI	CCRYGG	1 cut(s)	540
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	118, 142
BtsIMutI	CAGTG	1 cut(s)	63
CaiI	CAGNNNCTG	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	79, 322
Cfr42I	CCGCGG	1 cut(s)	543
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	2 cut(s)	285, 351
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	3 cut(s)	306, 389, 546
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	530
Eco57I	CTGAAG	2 cut(s)	47, 195
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	2 cut(s)	288, 354
FaiI	YATR	5 cut(s)	236, 269, 286, 352, 432
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FatI	CATG	2 cut(s)	284, 350
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	5 cut(s)	23, 65, 361, 372, 543
FokI	GGATG	2 cut(s)	125, 149
Fsp4HI	GCNGC	5 cut(s)	23, 65, 361, 372, 543
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	5 cut(s)	23, 65, 361, 372, 543
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	3 cut(s)	41, 80, 323
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	2 cut(s)	288, 354
HincII	GTYRAC	2 cut(s)	88, 178
HindII	GTYRAC	2 cut(s)	88, 178
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	2 cut(s)	88, 178
Hpy188I	TCNGA	2 cut(s)	340, 392
Hpy188III	TCNNGA	2 cut(s)	188, 213
Hpy8I	GTNNAC	2 cut(s)	88, 178
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	25, 250
HpyCH4III	ACNGT	3 cut(s)	172, 196, 554
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	5 cut(s)	245, 350, 434, 445, 557
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 61, 380, 431
HpyF3I	CTNAG	3 cut(s)	306, 389, 546
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	288, 354
KspI	CCGCGG	1 cut(s)	543
Kzo9I	GATC	1 cut(s)	218
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	5, 61
Lsp1109I	GCAGC	3 cut(s)	34, 372, 383
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	6 cut(s)	29, 40, 115, 302, 427, 527
MfeI	CAATTG	2 cut(s)	222, 407
MluCI	AATT	2 cut(s)	222, 407
MnlI	CCTC	5 cut(s)	31, 209, 394, 480, 593
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	1 cut(s)	525
MspA1I	CMGCKG	3 cut(s)	25, 374, 542
MspCI	CTTAAG	1 cut(s)	524
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	71
MunI	CAATTG	2 cut(s)	222, 407
Mva1269I	GAATGC	1 cut(s)	567
MvnI	CGCG	1 cut(s)	542
MwoI	GCNNNNNNNGC	4 cut(s)	52, 61, 380, 431
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	2 cut(s)	288, 354
NlaIV	GGNNCC	4 cut(s)	63, 81, 120, 186
NmeAIII	GCCGAG	2 cut(s)	67, 150
PciSI	GCTCTTC	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	519
PkrI	GCNGC	5 cut(s)	24, 66, 362, 373, 544
PspN4I	GGNNCC	4 cut(s)	63, 81, 120, 186
PspPI	GGNCC	2 cut(s)	79, 322
PstNI	CAGNNNCTG	1 cut(s)	194
PvuII	CAGCTG	2 cut(s)	25, 374
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
SacII	CCGCGG	1 cut(s)	543
SalI	GTCGAC	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	5 cut(s)	23, 65, 361, 372, 543
Sau3AI	GATC	1 cut(s)	218
Sau96I	GGNCC	2 cut(s)	79, 322
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	5 cut(s)	27, 93, 166, 186, 376
Sfr303I	CCGCGG	1 cut(s)	543
SgrBI	CCGCGG	1 cut(s)	543
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	2 cut(s)	222, 407
SsiI	CCGC	5 cut(s)	65, 110, 122, 540, 542
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	172, 196, 554
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	222, 407
TauI	GCSGC	2 cut(s)	67, 545
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	3 cut(s)	22, 360, 371
TspDTI	ATGAA	1 cut(s)	495
TspRI	CASTG	1 cut(s)	63
Vha464I	CTTAAG	1 cut(s)	524
XmiI	GTMKAC	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.