Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005657

Physical Location & Seq

Genomic Coordinates Forward (+)

13204518 .. 13205708

Gene Structure 1191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGGTTTCTGCAGCTCCGGCGACTCCTCCTCCGCTCTCTCTCCGCCTCTCCATCTCCAACCTTGAACCAAACCCTAATACCACTCCTCTCAACCAACCCCACCCACCATACCCCCAATCCAATCACCTCTAACTTCCTTTCTCTCTCACCTCCAAACCCTTCTCATCTTCTTCTTCCTCAACAACCCTCCACGAATCCCAGGTTCAACCACTGGCTCATTCAGAACCCTAATTTCGACCACACTGACGAAACCCTCTCCTACTGTGTGGACTATTTTGGTAGGAGGAAGGATTTCAAGGCCGCCCATGACGTCATTCTCAGTTCCCGGCGTGACGTTGCTGGCCCCAAAACCCTGGATTCCGCCATTGACAGGCTGGTGAGAGCTGGGAGGCCGGCACAGGCGGTGTCGATGTTTGAGAAGATGGAGGAGGACTATGGGATCAAGCGGGACAAGGCGGCGCTGAAATTGGTTGTTGAGAAGCTATGCGAACACGAGTTTGCGAGTAATGCTGAGAAGATGGTGAAGGGTTTGGTGAATGAGTTTTTTCCTGATGAGTATATGTGTGATTTGCTTATTAAGGGGTGGTGTGTGGATAGGAAACTTGATGAGGCTAGGAGATTGGCTGGGGAGATGAGCTTGTGTCAGGCGGTAAGGGTTGGAGAGGGGGGTGAAATGATTGATAGGATGAAATCAGCAGGGTTCGGGGAGGCTCTGGAAAAGAAGGCTTATTTTTGGGTTTCTGAAGATTTTGTGGGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

255

Amino Acids

28.82

Weight (kDa)

7.09

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60960
fragaria_vesca	FvH4_5g29994 FvH4_5g29994 FvH4_5g29994 FvH4_7g15150
malus_domestica	MD06G1203500.v1.1 MD14G1214300.v1.1
prunus_persica	Prupe.5G207600_v2.0.a1
pyrus_communis	pycom06g18160 pycom14g17770 pycom16g18740
rosa_chinensis	RchiOBHm_Chr7g0224161 RchiOBHm_Chr7g0224171
rosa_laevigata	RLG00000001915
rosa_multiflora	Rmu_co8487915.1_g000001 Rmu_sc0008008.1_g000001 Rmu_sc0023501.1_g000005
rosa_roxburghii	Rroxscaffold_3G00235130 Rroxscaffold_3G00235140 Rroxscaffold_3G00235150
rosa_rugosa	Rorug07G0199800 Rorug07G0221500
rosa_samantha	Rh7AG365400 Rh7BG357100 Rh7CG384300 Rh7DG360200
rosa_wichuraiana	Rw7G030930 Rw7G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	315
AccBSI	CCGCTC	1 cut(s)	36
AciI	CCGC	8 cut(s)	34, 45, 303, 363, 404, 448, 458, 650
AclWI	GGATC	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	765
AcyI	GRCGYC	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	372
AgsI	TTSAA	3 cut(s)	67, 208, 298
AjnI	CCWGG	2 cut(s)	200, 354
AluBI	AGCT	4 cut(s)	16, 386, 484, 639
AluI	AGCT	4 cut(s)	16, 386, 484, 639
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	3 cut(s)	300, 343, 392
ApeKI	GCWGC	1 cut(s)	13
Asp700I	GAANNNNTTC	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	1 cut(s)	344
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	6 cut(s)	118, 141, 391, 535, 547, 683
BauI	CACGAG	1 cut(s)	494
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	3 cut(s)	61, 418, 514
BciT130I	CCWGG	2 cut(s)	202, 356
BcnI	CCSGG	1 cut(s)	328
BfaI	CTAG	1 cut(s)	615
BfmI	CTRYAG	1 cut(s)	11
BfoI	RGCGCY	1 cut(s)	464
BisI	GCNGC	3 cut(s)	14, 303, 459
BlsI	GCNGC	3 cut(s)	15, 304, 460
Bme1390I	CCNGG	3 cut(s)	202, 328, 356
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	3 cut(s)	202, 328, 356
BpuMI	CCSGG	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	200, 354
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	202, 356
BseDI	CCNNGG	2 cut(s)	200, 354
BseGI	GGATG	1 cut(s)	693
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseMII	CTCAG	2 cut(s)	334, 504
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	4 cut(s)	17, 20, 77, 443
BseXI	GCAGC	1 cut(s)	25
BseYI	CCCAGC	2 cut(s)	386, 626
BshFI	GGCC	3 cut(s)	302, 345, 394
BsiSI	CCGG	3 cut(s)	19, 328, 395
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	3 cut(s)	302, 345, 394
Bsp143I	GATC	1 cut(s)	441
BspACI	CCGC	8 cut(s)	34, 45, 303, 363, 404, 448, 458, 650
BspANI	GGCC	3 cut(s)	302, 345, 394
BspCNI	CTCAG	2 cut(s)	333, 505
BspLI	GGNNCC	1 cut(s)	346
BspMAI	CTGCAG	1 cut(s)	15
BspPI	GGATC	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	394
BssECI	CCNNGG	2 cut(s)	200, 354
BssMI	GATC	1 cut(s)	441
BssNI	GRCGYC	1 cut(s)	312
BssSI	CACGAG	1 cut(s)	494
Bst2BI	CACGAG	1 cut(s)	494
Bst2UI	CCWGG	2 cut(s)	202, 356
Bst4CI	ACNGT	1 cut(s)	266
BstACI	GRCGYC	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	343, 396
BstDEI	CTNAG	2 cut(s)	320, 513
BstF5I	GGATG	1 cut(s)	693
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	1 cut(s)	444
BstMBI	GATC	1 cut(s)	441
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 509
BstNI	CCWGG	2 cut(s)	202, 356
BstSCI	CCNGG	3 cut(s)	200, 326, 354
BstSFI	CTRYAG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	355
BsuRI	GGCC	3 cut(s)	302, 345, 394
BtsCI	GGATG	1 cut(s)	693
BtsIMutI	CAGTG	2 cut(s)	211, 243
Cac8I	GCNNGC	2 cut(s)	343, 396
CfoI	GCGC	1 cut(s)	463
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	344
CviAII	CATG	1 cut(s)	308
DdeI	CTNAG	2 cut(s)	320, 513
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
EciI	GGCGGA	2 cut(s)	34, 352
Eco57I	CTGAAG	1 cut(s)	765
EcoRII	CCWGG	2 cut(s)	200, 354
FaeI	CATG	1 cut(s)	311
FaiI	YATR	6 cut(s)	111, 309, 438, 487, 561, 563
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	1 cut(s)	307
FauI	CCCGC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	14, 303, 459
FokI	GGATG	1 cut(s)	700
Fsp4HI	GCNGC	3 cut(s)	14, 303, 459
FspBI	CTAG	1 cut(s)	615
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	3 cut(s)	14, 303, 459
GsaI	CCCAGC	2 cut(s)	390, 630
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	3 cut(s)	302, 345, 394
HapII	CCGG	3 cut(s)	19, 328, 395
HhaI	GCGC	1 cut(s)	463
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	1 cut(s)	311
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HinfI	GANTC	3 cut(s)	24, 196, 359
HpaII	CCGG	3 cut(s)	19, 328, 395
HphI	GGTGA	6 cut(s)	118, 141, 391, 535, 547, 683
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	2 cut(s)	225, 745
Hpy188III	TCNNGA	2 cut(s)	551, 716
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	4 cut(s)	171, 283, 520, 718
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	2 cut(s)	312, 336
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 509
HpyF3I	CTNAG	2 cut(s)	320, 513
HpySE526I	ACGT	2 cut(s)	312, 336
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	1 cut(s)	311
HspAI	GCGC	1 cut(s)	461
KroI	GCCGGC	1 cut(s)	394
KroNI	GCCGGC	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	21
Lsp1109I	GCAGC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	2 cut(s)	312, 336
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	1 cut(s)	443
MbiI	CCGCTC	1 cut(s)	36
MboI	GATC	1 cut(s)	441
MboII	GAAGA	6 cut(s)	161, 164, 167, 433, 529, 758
MluCI	AATT	2 cut(s)	232, 467
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	2 cut(s)	83, 640
MroNI	GCCGGC	1 cut(s)	394
MroXI	GAANNNNTTC	1 cut(s)	293
MseI	TTAA	1 cut(s)	579
MspI	CCGG	3 cut(s)	19, 328, 395
MspR9I	CCNGG	3 cut(s)	202, 328, 356
MvaI	CCWGG	2 cut(s)	202, 356
MwoI	GCNNNNNNNGC	2 cut(s)	19, 509
NaeI	GCCGGC	1 cut(s)	396
NciI	CCSGG	1 cut(s)	328
NdeII	GATC	1 cut(s)	441
NgoMIV	GCCGGC	1 cut(s)	394
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	332
PdiI	GCCGGC	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	196, 359
PkrI	GCNGC	3 cut(s)	15, 304, 460
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	200, 354
PspFI	CCCAGC	2 cut(s)	386, 626
PspGI	CCWGG	2 cut(s)	200, 354
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	3 cut(s)	14, 303, 459
Sau3AI	GATC	1 cut(s)	441
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	3 cut(s)	202, 328, 356
SfcI	CTRYAG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	232, 467
SsiI	CCGC	8 cut(s)	34, 45, 303, 363, 404, 448, 458, 650
SspMI	CTAG	1 cut(s)	615
StyD4I	CCNGG	3 cut(s)	200, 326, 354
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	2 cut(s)	315, 339
TaqI	TCGA	2 cut(s)	237, 410
TasI	AATT	2 cut(s)	232, 467
TauI	GCSGC	2 cut(s)	305, 461
TfiI	GAWTC	2 cut(s)	196, 359
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	2 cut(s)	218, 250
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	1 cut(s)	704
TspRI	CASTG	2 cut(s)	218, 250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	1 cut(s)	615
ZraI	GACGTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.