Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8487915.1

Orthogroup ID

OG0005657

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 916

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8487915.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 916 bp

tcgattggttgtggagaagctctgcgagaatgggtttgccagcaatgctgagaagatggtgaaaggtttggtgaatgagtttttccctgatgagtatgtttgcgatttgcttattaaggggtggtgtgtggatgggaagcttgaggaggctaggagattggctggggagatgtataggggagggtttgagattgggactagtgctttcaatgccattcttgattgcgtgtgtaagctttgcaggaaaaaggacccctttcggctgcattccgaggctgagcagattttggtggatatggacttccatggggtgccgagaaatgtggagactttcaatgtgctgattactaatttgtgtaagattaggaagaccgaggatgcgttgaatttgtttcatagaatgggggagtggggttgttctcctaacgagactacgtttcttgaattgatcaggagcttgtatcaggcagctagggttggggagggagatgaaatgattgataggatgaaatcagcggggttcggggaggctcttgataagaaagcctattttgggtttctgaagattttgtgcggcattgagaggattgatcatgctttgtctgttttcaagaaaatgaagcaggatggatgtgagcccggggtcaagagttatgatctgctgatgggaaaattgtatgctcacaaccgtgctgatagagccactgccctgtttaatgaggcccaaaagaaaggggtgcctctgacacacaagacataccaggtggatccaaaatacttgaagaagccaaaggctaagaaggagaatacaagggaaacacttcctgagaagatggcaaggaagaggagacgtcttaagcaaattcgattgagctttgttaagaagcccaaaaagggaatgcgccgagcctactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

304

Amino Acids

34.9

Weight (kDa)

9.4

Isoelectric Point (pI)

30.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60960
fragaria_vesca	FvH4_5g29994 FvH4_5g29994 FvH4_5g29994 FvH4_7g15150
malus_domestica	MD06G1203500.v1.1 MD14G1214300.v1.1
prunus_persica	Prupe.5G207600_v2.0.a1
pyrus_communis	pycom06g18160 pycom14g17770 pycom16g18740
rosa_chinensis	RchiOBHm_Chr7g0224161 RchiOBHm_Chr7g0224171
rosa_laevigata	RLG00000001915
rosa_multiflora	Rmu_co8487915.1_g000001 Rmu_sc0008008.1_g000001 Rmu_sc0023501.1_g000005
rosa_roxburghii	Rroxscaffold_3G00235130 Rroxscaffold_3G00235140 Rroxscaffold_3G00235150
rosa_rugosa	Rorug07G0199800 Rorug07G0221500
rosa_samantha	Rh7AG365400 Rh7BG357100 Rh7CG384300 Rh7DG360200
rosa_wichuraiana	Rw7G030930 Rw7G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	854
AccB1I	GGYRCC	2 cut(s)	311, 737
AciI	CCGC	2 cut(s)	516, 574
AclWI	GGATC	2 cut(s)	762, 775
AcsI	RAATTY	2 cut(s)	386, 862
AcuI	CTGAAG	1 cut(s)	582
AcyI	GRCGYC	1 cut(s)	851
AfiI	CCNNNNNNNGG	2 cut(s)	553, 894
AflII	CTTAAG	1 cut(s)	855
AgsI	TTSAA	6 cut(s)	209, 335, 386, 444, 611, 782
AhlI	ACTAGT	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	760
AleI	CACNNNNGTG	1 cut(s)	688
AluBI	AGCT	6 cut(s)	20, 140, 236, 457, 471, 874
AluI	AGCT	6 cut(s)	20, 140, 236, 457, 471, 874
Alw26I	GTCTC	3 cut(s)	321, 423, 842
AlwI	GGATC	2 cut(s)	762, 775
Ama87I	CYCGRG	1 cut(s)	639
AoxI	GGCC	1 cut(s)	721
ApeKI	GCWGC	2 cut(s)	263, 468
ApoI	RAATTY	2 cut(s)	386, 862
Asp700I	GAANNNNTTC	1 cut(s)	820
AspLEI	GCGC	1 cut(s)	904
AspS9I	GGNCC	2 cut(s)	251, 722
AsuC2I	CCSGG	2 cut(s)	640, 641
AsuHPI	GGTGA	2 cut(s)	71, 83
AvaI	CYCGRG	1 cut(s)	639
AvaII	GGWCC	1 cut(s)	251
BamHI	GGATCC	1 cut(s)	767
BanI	GGYRCC	2 cut(s)	311, 737
BanII	GRGCYC	1 cut(s)	640
BbsI	GAAGAC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	250, 480
BccI	CCATC	5 cut(s)	50, 126, 621, 659, 827
BciT130I	CCWGG	1 cut(s)	762
BclI	TGATCA	2 cut(s)	448, 590
BcnI	CCSGG	2 cut(s)	640, 641
BcoDI	GTCTC	3 cut(s)	321, 423, 842
BcuI	ACTAGT	1 cut(s)	198
BfaI	CTAG	3 cut(s)	151, 199, 472
BfrI	CTTAAG	1 cut(s)	855
BisI	GCNGC	3 cut(s)	264, 469, 575
BlpI	GCTNAGC	1 cut(s)	277
BlsI	GCNGC	3 cut(s)	265, 470, 576
Bme1390I	CCNGG	3 cut(s)	640, 641, 762
Bme18I	GGWCC	1 cut(s)	251
BmeT110I	CYCGRG	1 cut(s)	639
BmgT120I	GGNCC	2 cut(s)	251, 722
BmiI	GGNNCC	4 cut(s)	253, 313, 739, 769
BmrFI	CCNGG	3 cut(s)	640, 641, 762
BmsI	GCATC	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	162
BpuMI	CCSGG	2 cut(s)	640, 641
BsaHI	GRCGYC	1 cut(s)	851
BsaJI	CCNNGG	5 cut(s)	271, 305, 373, 639, 640
Bsc4I	CCNNNNNNNGG	2 cut(s)	553, 894
Bse3DI	GCAATG	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	762
BseDI	CCNNGG	5 cut(s)	271, 305, 373, 639, 640
BseGI	GGATG	5 cut(s)	137, 383, 511, 632, 636
BseLI	CCNNNNNNNGG	2 cut(s)	553, 894
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	3 cut(s)	40, 268, 817
BseRI	GAGGAG	2 cut(s)	159, 860
BseXI	GCAGC	2 cut(s)	250, 480
BseYI	CCCAGC	1 cut(s)	162
BshFI	GGCC	1 cut(s)	723
BshNI	GGYRCC	2 cut(s)	311, 737
BsiHKCI	CYCGRG	1 cut(s)	639
BsiSI	CCGG	1 cut(s)	640
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	553, 894
BsmAI	GTCTC	3 cut(s)	321, 423, 842
BsmBI	CGTCTC	1 cut(s)	842
BsmFI	GGGAC	1 cut(s)	209
BsmI	GAATGC	2 cut(s)	266, 904
BsnI	GGCC	1 cut(s)	723
BsoBI	CYCGRG	1 cut(s)	639
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp143I	GATC	4 cut(s)	448, 590, 656, 767
Bsp1720I	GCTNAGC	1 cut(s)	277
Bsp19I	CCATGG	1 cut(s)	305
BspACI	CCGC	2 cut(s)	516, 574
BspANI	GGCC	1 cut(s)	723
BspCNI	CTCAG	3 cut(s)	41, 269, 818
BspLI	GGNNCC	4 cut(s)	253, 313, 739, 769
BspPI	GGATC	2 cut(s)	762, 775
BspT107I	GGYRCC	2 cut(s)	311, 737
BspTI	CTTAAG	1 cut(s)	855
BsrDI	GCAATG	1 cut(s)	50
BssECI	CCNNGG	5 cut(s)	271, 305, 373, 639, 640
BssMI	GATC	4 cut(s)	448, 590, 656, 767
BssNI	GRCGYC	1 cut(s)	851
BssT1I	CCWWGG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	762
Bst4CI	ACNGT	1 cut(s)	690
Bst6I	CTCTTC	1 cut(s)	837
BstACI	GRCGYC	1 cut(s)	851
BstAFI	CTTAAG	1 cut(s)	855
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	4 cut(s)	49, 277, 796, 826
BstDSI	CCRYGG	1 cut(s)	305
BstF5I	GGATG	5 cut(s)	137, 383, 511, 632, 636
BstHHI	GCGC	1 cut(s)	904
BstKTI	GATC	4 cut(s)	451, 593, 659, 770
BstMAI	GTCTC	3 cut(s)	321, 423, 842
BstMBI	GATC	4 cut(s)	448, 590, 656, 767
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 210, 699
BstNI	CCWGG	1 cut(s)	762
BstSCI	CCNGG	3 cut(s)	638, 639, 760
BstV1I	GCAGC	2 cut(s)	250, 480
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	1 cut(s)	767
BstYI	RGATCY	1 cut(s)	767
BsuRI	GGCC	1 cut(s)	723
BtgI	CCRYGG	1 cut(s)	305
BtsCI	GGATG	5 cut(s)	137, 383, 511, 632, 636
BtsI	GCAGTG	1 cut(s)	703
BtsIMutI	CAGTG	1 cut(s)	703
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	1 cut(s)	904
Cfr13I	GGNCC	2 cut(s)	251, 722
Cfr9I	CCCGGG	1 cut(s)	639
CsiI	ACCWGGT	1 cut(s)	760
CviAII	CATG	2 cut(s)	306, 594
DdeI	CTNAG	4 cut(s)	49, 277, 796, 826
DpnI	GATC	4 cut(s)	450, 592, 658, 769
DpnII	GATC	4 cut(s)	448, 590, 656, 767
Eam1104I	CTCTTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	837
Eco130I	CCWWGG	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	640
Eco47I	GGWCC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	582
Eco88I	CYCGRG	1 cut(s)	639
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	760
EcoT14I	CCWWGG	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	640
ErhI	CCWWGG	1 cut(s)	305
Esp3I	CGTCTC	1 cut(s)	842
FaeI	CATG	2 cut(s)	309, 597
FaiI	YATR	9 cut(s)	97, 175, 297, 307, 397, 595, 655, 679, 758
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	305, 593
FauI	CCCGC	1 cut(s)	509
FbaI	TGATCA	2 cut(s)	448, 590
Fnu4HI	GCNGC	3 cut(s)	264, 469, 575
FokI	GGATG	5 cut(s)	144, 390, 518, 639, 643
FriOI	GRGCYC	1 cut(s)	640
Fsp4HI	GCNGC	3 cut(s)	264, 469, 575
FspBI	CTAG	3 cut(s)	151, 199, 472
GlaI	GCGC	1 cut(s)	903
GluI	GCNGC	3 cut(s)	264, 469, 575
GsaI	CCCAGC	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	723
HapII	CCGG	1 cut(s)	640
HhaI	GCGC	1 cut(s)	904
Hin1I	GRCGYC	1 cut(s)	851
Hin1II	CATG	2 cut(s)	309, 597
Hin6I	GCGC	1 cut(s)	902
HinP1I	GCGC	1 cut(s)	902
HindIII	AAGCTT	2 cut(s)	138, 234
HpaII	CCGG	1 cut(s)	640
HphI	GGTGA	2 cut(s)	71, 83
Hpy188I	TCNGA	3 cut(s)	272, 562, 745
Hpy188III	TCNNGA	7 cut(s)	219, 441, 452, 534, 611, 647, 825
HpyAV	CCTTC	1 cut(s)	794
HpyCH4III	ACNGT	1 cut(s)	690
HpyCH4IV	ACGT	2 cut(s)	435, 851
HpyCH4V	TGCA	2 cut(s)	241, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 210, 699
HpyF3I	CTNAG	4 cut(s)	49, 277, 796, 826
HpySE526I	ACGT	2 cut(s)	435, 851
Hsp92I	GRCGYC	1 cut(s)	851
Hsp92II	CATG	2 cut(s)	309, 597
HspAI	GCGC	1 cut(s)	902
Ksp22I	TGATCA	2 cut(s)	448, 590
Kzo9I	GATC	4 cut(s)	448, 590, 656, 767
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	2 cut(s)	250, 480
LweI	GCATC	1 cut(s)	368
MabI	ACCWGGT	1 cut(s)	760
MaeI	CTAG	3 cut(s)	151, 199, 472
MaeII	ACGT	2 cut(s)	435, 851
MalI	GATC	4 cut(s)	450, 592, 658, 769
MboI	GATC	4 cut(s)	448, 590, 656, 767
MboII	GAAGA	6 cut(s)	65, 380, 575, 794, 842, 854
MflI	RGATCY	1 cut(s)	767
MhlI	GDGCHC	1 cut(s)	640
MluCI	AATT	5 cut(s)	350, 386, 444, 672, 862
MroXI	GAANNNNTTC	1 cut(s)	820
MseI	TTAA	4 cut(s)	115, 715, 856, 880
MslI	CAYNNNNRTG	1 cut(s)	688
MspA1I	CMGCKG	1 cut(s)	516
MspCI	CTTAAG	1 cut(s)	855
MspI	CCGG	1 cut(s)	640
MspR9I	CCNGG	3 cut(s)	640, 641, 762
Mva1269I	GAATGC	2 cut(s)	266, 904
MvaI	CCWGG	1 cut(s)	762
MwoI	GCNNNNNNNGC	3 cut(s)	45, 210, 699
NciI	CCSGG	2 cut(s)	640, 641
NcoI	CCATGG	1 cut(s)	305
NdeII	GATC	4 cut(s)	448, 590, 656, 767
NlaIII	CATG	2 cut(s)	309, 597
NlaIV	GGNNCC	4 cut(s)	253, 313, 739, 769
NmeAIII	GCCGAG	1 cut(s)	340
OliI	CACNNNNGTG	1 cut(s)	688
PctI	GAATGC	2 cut(s)	266, 904
PdmI	GAANNNNTTC	1 cut(s)	820
PkrI	GCNGC	3 cut(s)	265, 470, 576
PpuMI	RGGWCCY	1 cut(s)	251
Psp5II	RGGWCCY	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	760
PspFI	CCCAGC	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	760
PspN4I	GGNNCC	4 cut(s)	253, 313, 739, 769
PspPI	GGNCC	2 cut(s)	251, 722
PspPPI	RGGWCCY	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	767
RseI	CAYNNNNRTG	1 cut(s)	688
SaqAI	TTAA	4 cut(s)	115, 715, 856, 880
SatI	GCNGC	3 cut(s)	264, 469, 575
Sau3AI	GATC	4 cut(s)	448, 590, 656, 767
Sau96I	GGNCC	2 cut(s)	251, 722
ScrFI	CCNGG	3 cut(s)	640, 641, 762
SduI	GDGCHC	1 cut(s)	640
SexAI	ACCWGGT	1 cut(s)	760
SfaNI	GCATC	1 cut(s)	368
SinI	GGWCC	1 cut(s)	251
SmaI	CCCGGG	1 cut(s)	641
SmiMI	CAYNNNNRTG	1 cut(s)	688
SmlI	CTYRAG	2 cut(s)	141, 855
SmoI	CTYRAG	2 cut(s)	141, 855
SpeI	ACTAGT	1 cut(s)	198
Sse9I	AATT	5 cut(s)	350, 386, 444, 672, 862
SsiI	CCGC	2 cut(s)	516, 574
SspMI	CTAG	3 cut(s)	151, 199, 472
StyD4I	CCNGG	3 cut(s)	638, 639, 760
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	1 cut(s)	690
TaiI	ACGT	2 cut(s)	438, 854
TaqI	TCGA	2 cut(s)	2, 866
TaqII	GACCGA	1 cut(s)	387
TasI	AATT	5 cut(s)	350, 386, 444, 672, 862
TauI	GCSGC	1 cut(s)	577
Tru1I	TTAA	4 cut(s)	115, 715, 856, 880
Tru9I	TTAA	4 cut(s)	115, 715, 856, 880
TscAI	CASTG	1 cut(s)	710
TseI	GCWGC	2 cut(s)	263, 468
TspDTI	ATGAA	4 cut(s)	384, 505, 522, 633
TspMI	CCCGGG	1 cut(s)	639
TspRI	CASTG	1 cut(s)	710
Vha464I	CTTAAG	1 cut(s)	855
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	2 cut(s)	386, 862
XmaI	CCCGGG	1 cut(s)	639
XmnI	GAANNNNTTC	1 cut(s)	820
XspI	CTAG	3 cut(s)	151, 199, 472
ZraI	GACGTC	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.