Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005657

Physical Location & Seq

Genomic Coordinates Forward (+)

22007557 .. 22009018

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGTTCTTGGGTTTAACCAGTGGCTGATCTCGAACCGTAATTTCGAGCACACCGACGTGACCCTATCGTATTTGGTGGATTACTTTGGCAGGAGGAAGGATTTCAAGGTGACCCACGATGTGATTGTGAGTTCAGGTGGAGTTGCTGGGGCGAAAACTTTTGCTTCCGCCATTGATAGGCTGGTGAGAGCTGGGAGGCCTGCTCAAGCTGTTTCTTTCTTTGAGAAGATGGAGAAGGATTATGGGCTGAAGCGCGAAAAAGATTCGCTGAAATTGGTTATCGAAAATCTCTGCGAAAACGGGTTTGCGAGCAATGCTGAGAAAATGGTGAAGGGTTTGGCCAATGAGTTTTTCCCTGATGGGTATATGTGTGATTTGCTGATCAAGGGTTGGTGTGTTGATGGGAAGCTTGAGGAAGCGAGGAAATTGGCTGGGGAGATGTACAGAGGAGGGTTTGAGATTGGTACTACCGCTTACAATGCGATTCTCGATTGTGTTTCGAAGCTTTGTAGGAAGAAGGACCCGTTTCGCCTGCATTCGGAGGTGGAGGAAATCTTGGTGGATATGGACACTCATGGGGTTCCAAGAAATGTGGAGACTTCCAATGTTTTGATTAGTAATTTGTGTAAAATTAGGAGGACAGAGGATGCTCTGAACCTGTATGAGAGAATGGGTGAGTGGGGGTGTTACCCGAATGAGACTACGTTTCTTGTGTTGATCAGGAGCTTGTATCAGGCAGCAAGGATTGGGGAGGGAGATGAAATGATTGATAAGATGAAGTCTACCGGATTCGGTGAAGCTCTTAATAAGAAGGAATATTATGGATTCTTGAAGATTTTGTGTGGCATTGAGAGGATCGATCACTCATTGCGTGTTTTCAAGAAGATGAAGGACGATAAATGTGAGCCCGGAATCAAGACTTATGAGCTGTTGATGGGGAAACTGTATGCTCGCAACCGTGTCGATAGAGCCACTGCCCTGTTCAATGAGGCTCAAAAGAGAGGGGTGCCTTTGACACAGAAGGCGTATCCAGTGGACCCGTATTTCTTGAAGAAGAAGGAGCTAAAGACTGCGAAGAAGGGTGTGAAGAATGAGAAGAAGCGGGAAACGTTCCCTGAGAAGATGGCAAGGAAGAAGAGACGGTTGAACGTCGAGCCTACTGATGAGACGTCATTAGAAGTCGGAGTTGTCAAATTATCAAAGGGGAATGACAGTTCTGATCAAAGCTTCTGTTTTCCGTATTGTTGTTTTGATCTTATAGTTGGTGAAACTAGAAATAAACCAGACTTTGATTCATTTGATTCTTCAGTCTGTGCGACGTGCTTTCAAATATGGTCATCTGTTTATGCGAAATTTTGTGTTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

456

Amino Acids

51.92

Weight (kDa)

8.77

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60960
fragaria_vesca	FvH4_5g29994 FvH4_5g29994 FvH4_5g29994 FvH4_7g15150
malus_domestica	MD06G1203500.v1.1 MD14G1214300.v1.1
prunus_persica	Prupe.5G207600_v2.0.a1
pyrus_communis	pycom06g18160 pycom14g17770 pycom16g18740
rosa_chinensis	RchiOBHm_Chr7g0224161 RchiOBHm_Chr7g0224171
rosa_laevigata	RLG00000001915
rosa_multiflora	Rmu_co8487915.1_g000001 Rmu_sc0008008.1_g000001 Rmu_sc0023501.1_g000005
rosa_roxburghii	Rroxscaffold_3G00235130 Rroxscaffold_3G00235140 Rroxscaffold_3G00235150
rosa_rugosa	Rorug07G0199800 Rorug07G0221500
rosa_samantha	Rh7AG365400 Rh7BG357100 Rh7CG384300 Rh7DG360200
rosa_wichuraiana	Rw7G030930 Rw7G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1172
AccB1I	GGYRCC	1 cut(s)	1006
AccI	GTMKAC	1 cut(s)	782
AccII	CGCG	1 cut(s)	255
AciI	CCGC	3 cut(s)	168, 471, 1102
AclI	AACGTT	1 cut(s)	1109
AclWI	GGATC	1 cut(s)	863
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	1352
AcuI	CTGAAG	2 cut(s)	269, 1290
AcyI	GRCGYC	1 cut(s)	1169
AdeI	CACNNNGTG	1 cut(s)	121
AfaI	GTAC	2 cut(s)	443, 466
AfiI	CCNNNNNNNGG	2 cut(s)	177, 538
AgsI	TTSAA	7 cut(s)	106, 832, 880, 985, 1051, 1147, 1328
AjiI	CACGTC	2 cut(s)	58, 1320
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AleI	CACNNNNGTG	1 cut(s)	56
AloI	GAACNNNNNNTCC	2 cut(s)	1198, 1230
AluBI	AGCT	9 cut(s)	191, 209, 409, 505, 726, 800, 928, 1063, 1227
AluI	AGCT	9 cut(s)	191, 209, 409, 505, 726, 800, 928, 1063, 1227
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	4 cut(s)	590, 692, 1132, 1160
AlwI	GGATC	1 cut(s)	863
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	197, 339
ApeKI	GCWGC	1 cut(s)	737
ApoI	RAATTY	1 cut(s)	1352
Asp700I	GAANNNNTTC	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	520, 1036
AsuC2I	CCSGG	1 cut(s)	909
AsuHPI	GGTGA	6 cut(s)	121, 196, 340, 686, 806, 1277
AsuII	TTCGAA	1 cut(s)	500
AvaII	GGWCC	2 cut(s)	520, 1036
BalI	TGGCCA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	1006
BanII	GRGCYC	1 cut(s)	909
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	749
BccI	CCATC	5 cut(s)	223, 353, 395, 928, 1117
BcgI	CGANNNNNNTGC	2 cut(s)	943, 977
BciVI	GTATCC	1 cut(s)	1038
BclI	TGATCA	3 cut(s)	381, 717, 1219
BcnI	CCSGG	1 cut(s)	909
BcoDI	GTCTC	4 cut(s)	590, 692, 1132, 1160
BfaI	CTAG	1 cut(s)	1272
BfuI	GTATCC	1 cut(s)	1038
BisI	GCNGC	1 cut(s)	738
BlsI	GCNGC	1 cut(s)	739
Bme1390I	CCNGG	1 cut(s)	909
Bme18I	GGWCC	2 cut(s)	520, 1036
BmgBI	CACGTC	2 cut(s)	58, 1320
BmgT120I	GGNCC	2 cut(s)	520, 1036
BmiI	GGNNCC	4 cut(s)	522, 582, 1008, 1038
BmrFI	CCNGG	1 cut(s)	909
BmsI	GCATC	1 cut(s)	637
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
Bpu14I	TTCGAA	1 cut(s)	500
BpuEI	CTTGAG	2 cut(s)	189, 431
BpuMI	CCSGG	1 cut(s)	909
Bsa29I	ATCGAT	1 cut(s)	858
BsaHI	GRCGYC	1 cut(s)	1169
BsaWI	WCCGGW	1 cut(s)	785
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 538
Bse1I	ACTGG	2 cut(s)	19, 1031
Bse3DI	GCAATG	2 cut(s)	319, 866
BseCI	ATCGAT	1 cut(s)	858
BseGI	GGATG	1 cut(s)	652
BseLI	CCNNNNNNNGG	2 cut(s)	177, 538
BseMI	GCAATG	2 cut(s)	319, 866
BseMII	CTCAG	2 cut(s)	309, 1107
BseNI	ACTGG	2 cut(s)	19, 1031
BseRI	GAGGAG	1 cut(s)	462
BseXI	GCAGC	1 cut(s)	749
BseYI	CCCAGC	3 cut(s)	146, 191, 431
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	199, 341
BshNI	GGYRCC	1 cut(s)	1006
BshVI	ATCGAT	1 cut(s)	858
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	786, 909
BslI	CCNNNNNNNGG	2 cut(s)	177, 538
BsmAI	GTCTC	4 cut(s)	590, 692, 1132, 1160
BsmBI	CGTCTC	2 cut(s)	1132, 1160
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	199, 341
Bsp119I	TTCGAA	1 cut(s)	500
Bsp1286I	GDGCHC	2 cut(s)	51, 909
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
BspACI	CCGC	3 cut(s)	168, 471, 1102
BspANI	GGCC	2 cut(s)	199, 341
BspCNI	CTCAG	2 cut(s)	310, 1108
BspDI	ATCGAT	1 cut(s)	858
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	4 cut(s)	522, 582, 1008, 1038
BspPI	GGATC	1 cut(s)	863
BspT104I	TTCGAA	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	1006
BsrDI	GCAATG	2 cut(s)	319, 866
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	2 cut(s)	19, 1031
BssMI	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
BssNI	GRCGYC	1 cut(s)	1169
Bst4CI	ACNGT	5 cut(s)	38, 945, 959, 1143, 1214
Bst6I	CTCTTC	1 cut(s)	1130
BstACI	GRCGYC	1 cut(s)	1169
BstAUI	TGTACA	1 cut(s)	441
BstBI	TTCGAA	1 cut(s)	500
BstC8I	GCNNGC	4 cut(s)	201, 310, 533, 952
BstDEI	CTNAG	2 cut(s)	318, 1116
BstEII	GGTNACC	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	652
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	7 cut(s)	30, 384, 720, 858, 862, 1222, 1255
BstMAI	GTCTC	4 cut(s)	590, 692, 1132, 1160
BstMBI	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 479
BstPI	GGTNACC	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	907
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	749
Bsu15I	ATCGAT	1 cut(s)	858
BsuI	GTATCC	1 cut(s)	1038
BsuRI	GGCC	2 cut(s)	199, 341
BsuTUI	ATCGAT	1 cut(s)	858
BtrI	CACGTC	2 cut(s)	58, 1320
BtsCI	GGATG	1 cut(s)	652
BtsI	GCAGTG	1 cut(s)	972
BtsIMutI	CAGTG	3 cut(s)	26, 972, 1038
Cac8I	GCNNGC	4 cut(s)	201, 310, 533, 952
CaiI	CAGNNNCTG	1 cut(s)	25
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	520, 1036
ClaI	ATCGAT	1 cut(s)	858
Csp6I	GTAC	2 cut(s)	442, 465
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviAII	CATG	1 cut(s)	575
CviQI	GTAC	2 cut(s)	442, 465
DdeI	CTNAG	2 cut(s)	318, 1116
DpnI	GATC	7 cut(s)	29, 383, 719, 857, 861, 1221, 1254
DpnII	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
DraIII	CACNNNGTG	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	1130
EarI	CTCTTC	1 cut(s)	1130
EciI	GGCGGA	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	909
Eco47I	GGWCC	2 cut(s)	520, 1036
Eco57I	CTGAAG	2 cut(s)	269, 1290
Eco91I	GGTNACC	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	520
EcoO65I	GGTNACC	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	909
Esp3I	CGTCTC	2 cut(s)	1132, 1160
FaeI	CATG	1 cut(s)	578
FatI	CATG	1 cut(s)	574
FauI	CCCGC	1 cut(s)	1095
FbaI	TGATCA	3 cut(s)	381, 717, 1219
FblI	GTMKAC	1 cut(s)	782
Fnu4HI	GCNGC	1 cut(s)	738
FokI	GGATG	1 cut(s)	659
FriOI	GRGCYC	1 cut(s)	909
Fsp4HI	GCNGC	1 cut(s)	738
FspBI	CTAG	1 cut(s)	1272
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	1 cut(s)	738
GsaI	CCCAGC	3 cut(s)	150, 195, 435
HaeIII	GGCC	2 cut(s)	199, 341
HapII	CCGG	2 cut(s)	786, 909
HhaI	GCGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	1169
Hin1II	CATG	1 cut(s)	578
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HindIII	AAGCTT	3 cut(s)	407, 503, 1225
HinfI	GANTC	7 cut(s)	263, 484, 789, 825, 912, 1292, 1301
HpaII	CCGG	2 cut(s)	786, 909
HphI	GGTGA	6 cut(s)	121, 196, 340, 686, 806, 1277
Hpy166II	GTNNAC	2 cut(s)	783, 1036
Hpy188I	TCNGA	4 cut(s)	541, 654, 1184, 1219
Hpy188III	TCNNGA	7 cut(s)	31, 488, 721, 829, 880, 916, 1048
Hpy8I	GTNNAC	2 cut(s)	783, 1036
Hpy99I	CGWCG	3 cut(s)	59, 1154, 1321
HpyAV	CCTTC	9 cut(s)	91, 229, 325, 511, 805, 883, 1015, 1051, 1072
HpyCH4III	ACNGT	5 cut(s)	38, 945, 959, 1143, 1214
HpyCH4IV	ACGT	6 cut(s)	57, 704, 1109, 1149, 1169, 1319
HpyCH4V	TGCA	1 cut(s)	535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 479
HpyF3I	CTNAG	2 cut(s)	318, 1116
HpySE526I	ACGT	6 cut(s)	57, 704, 1109, 1149, 1169, 1319
Hsp92I	GRCGYC	1 cut(s)	1169
Hsp92II	CATG	1 cut(s)	578
HspAI	GCGC	1 cut(s)	253
Ksp22I	TGATCA	3 cut(s)	381, 717, 1219
Kzo9I	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
LmnI	GCTCC	2 cut(s)	723, 1060
Lsp1109I	GCAGC	1 cut(s)	749
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	1 cut(s)	1272
MaeII	ACGT	6 cut(s)	57, 704, 1109, 1149, 1169, 1319
MaeIII	GTNAC	3 cut(s)	58, 109, 686
MalI	GATC	7 cut(s)	29, 383, 719, 857, 861, 1221, 1254
MboI	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
MhlI	GDGCHC	2 cut(s)	51, 909
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	7 cut(s)	40, 272, 425, 619, 630, 1193, 1352
MluNI	TGGCCA	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	1162
Mox20I	TGGCCA	1 cut(s)	341
MroXI	GAANNNNTTC	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	2 cut(s)	15, 804
MslI	CAYNNNNRTG	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	2 cut(s)	786, 909
MspR9I	CCNGG	1 cut(s)	909
Mva1269I	GAATGC	1 cut(s)	535
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	314, 479
NciI	CCSGG	1 cut(s)	909
NdeII	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
NlaIII	CATG	1 cut(s)	578
NlaIV	GGNNCC	4 cut(s)	522, 582, 1008, 1038
NmuCI	GTSAC	2 cut(s)	58, 109
NspV	TTCGAA	1 cut(s)	500
OliI	CACNNNNGTG	1 cut(s)	56
PceI	AGGCCT	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	7 cut(s)	263, 484, 789, 825, 912, 1292, 1301
PkrI	GCNGC	1 cut(s)	739
PpuMI	RGGWCCY	1 cut(s)	520
Psp1406I	AACGTT	1 cut(s)	1109
Psp5II	RGGWCCY	1 cut(s)	520
PspEI	GGTNACC	1 cut(s)	109
PspFI	CCCAGC	3 cut(s)	146, 191, 431
PspN4I	GGNNCC	4 cut(s)	522, 582, 1008, 1038
PspPI	GGNCC	2 cut(s)	520, 1036
PspPPI	RGGWCCY	1 cut(s)	520
PstNI	CAGNNNCTG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	443, 466
RsaNI	GTAC	2 cut(s)	442, 465
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	15, 804
SatI	GCNGC	1 cut(s)	738
Sau3AI	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
Sau96I	GGNCC	2 cut(s)	520, 1036
ScrFI	CCNGG	1 cut(s)	909
SduI	GDGCHC	2 cut(s)	51, 909
SfaNI	GCATC	1 cut(s)	637
SfuI	TTCGAA	1 cut(s)	500
SinI	GGWCC	2 cut(s)	520, 1036
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	204, 410
SmoI	CTYRAG	2 cut(s)	204, 410
Sse9I	AATT	7 cut(s)	40, 272, 425, 619, 630, 1193, 1352
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	3 cut(s)	168, 471, 1102
SspI	AATATT	1 cut(s)	818
SspMI	CTAG	1 cut(s)	1272
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	907
TaaI	ACNGT	5 cut(s)	38, 945, 959, 1143, 1214
TaiI	ACGT	6 cut(s)	60, 707, 1112, 1152, 1172, 1322
TaqI	TCGA	9 cut(s)	32, 45, 282, 489, 500, 858, 963, 1152, 1363
TasI	AATT	7 cut(s)	40, 272, 425, 619, 630, 1193, 1352
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	7 cut(s)	263, 484, 789, 825, 912, 1292, 1301
Tru1I	TTAA	2 cut(s)	15, 804
Tru9I	TTAA	2 cut(s)	15, 804
TscAI	CASTG	3 cut(s)	26, 979, 1038
TseFI	GTSAC	2 cut(s)	58, 109
TseI	GCWGC	1 cut(s)	737
Tsp45I	GTSAC	2 cut(s)	58, 109
TspDTI	ATGAA	4 cut(s)	774, 791, 902, 1284
TspGWI	ACGGA	1 cut(s)	1227
TspRI	CASTG	3 cut(s)	26, 979, 1038
VpaK11BI	GGWCC	2 cut(s)	520, 1036
XapI	RAATTY	1 cut(s)	1352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	782
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	1 cut(s)	1272
ZraI	GACGTC	1 cut(s)	1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.