Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005657

Physical Location & Seq

Genomic Coordinates Forward (+)

37508357 .. 37510710

Gene Structure 2354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG357100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGAGGTCTTTGAAGCCTCTGCAACTCCGGCGACTCCTACTCCGCTGTGTCTCCACCTCTTCTTCTCCAACCCTCCAAATCCTCATCCCATTTCCCTCAACCAAACCCACCCACCAAATCCCCAACTCAATCACCACCACCTCTCACTTTCTCTCTCTACCCCATTTCTCTCTCCCCAAATCCTTCTCTTCTTCCTCATCCCCACCACCCCTCGACGAATCCCAACTAGCCCAATCCATCTCCTCCCACCTTCTCCACCACCAACCCGACTCCTCCTCCGATCCCCTCTCCGTCGCCCAATCCCTCCAATCCACCTTCCCTCACGTCACCCCCACCCCTTCTCTGCTCCTCTCCGCCGAAGCCGGCCGCACTGTCCTAGGCTTCAACCACTGGCTCATCCAGAACCCTGATTTCCACCATACCGACGACACCCTCTCCTACTTTGTCGACTACTTCGGCAGGAGGAAGGATTTCAAGGCCGCCCATGACGTCATTCTCACTGCGCCGCGTGACGTTGCCGGGCCCAAGACCTTGGCCGCCTCCATTGACAGGCTGGTGAGAGCCGGGAGGCCGGCGCAGGCGGTCTCTTTCTTTGAGAAGATGGAGGAGGACTATGGGATCAAGAGGGACAAGGCCGCGCTTCGATTGGTTGTGGAGAAGCTCTGCGAGAATGGGTTTGCCAGCAATGCTGAGAAGATGGTGAAAGGTTTGGTTAATGAGTTTTTCCCTGATGAGTATGTTTGCGATTTGCTTATTAAGGGGTGGTGTGTGGATGGGAAGCTTGAGGAGGCTAGGAGATTGGCTGGGGAGATGTATAGGGGAGGGTTTGAGATTGGGACTAGTGCCTTCAATGCCATTCTTGATTGTGTGTGTAAGCTTTGCAGGAAAAAGGACCCCTTTCGGCTTCATTCCGAGGCTGAGCAGATTTTGGTGGATATGGACTTCCATGGGGTGCCGAGAAATGTGGAGACTTTCAATGTGCTGATTACTAATTTGTGTAAGATTAGGAAGACGGACGACGCGTTGAATTTGTTTCATAGAATGGGGGAGTGGGGGTGTTCTCCTAACGATACTACGTTTCTTGAATTGATCAGGAGCTTGTATCAGGCAGCTAGGGTTGGGGAGGGAGATGAAATGATCGATAGGATGAAATCAGCGGGGTTCGGGGAGGCTCTCGATAAGAAGGCCTATTTTGGGTTTCTGAAGATTTTGTGCGGCATTGAGAGGATTGATCATGCTTTGTCTGTTTTCAAGAAAATGAAGGAGGATGGATGTGAGCCCGGGGTCAAGAGTTATGATCTGCTGATGGGAAAATTGTATGCTCACAACCGTGCTGATAGAGCCACTGCCCTGTTTAATGAGGCCCAAAAGAAAGGGGTGCCTGTGACACACAAGACATACCAGGTGGATCCAAAATACTTGAAGAAGTCAAAGGCTAAGAAGGAGAATACGAGGGAAACACTTCCTGAGAAGATGGCAAGGAAGAGGAGACGTCTTAAGCAAATTCGGTTGAGCTTCGTAAAGAAGCCCAAAAAGGGGATGCGCCGAGCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

518

Amino Acids

58.49

Weight (kDa)

9.35

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	309 - 364	3.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	317 - 348	7e-06	PPR repeat
PPR_2	PF13041	321 - 367	1.1e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60960
fragaria_vesca	FvH4_5g29994 FvH4_5g29994 FvH4_5g29994 FvH4_7g15150
malus_domestica	MD06G1203500.v1.1 MD14G1214300.v1.1
prunus_persica	Prupe.5G207600_v2.0.a1
pyrus_communis	pycom06g18160 pycom14g17770 pycom16g18740
rosa_chinensis	RchiOBHm_Chr7g0224161 RchiOBHm_Chr7g0224171
rosa_laevigata	RLG00000001915
rosa_multiflora	Rmu_co8487915.1_g000001 Rmu_sc0008008.1_g000001 Rmu_sc0023501.1_g000005
rosa_roxburghii	Rroxscaffold_3G00235130 Rroxscaffold_3G00235140 Rroxscaffold_3G00235150
rosa_rugosa	Rorug07G0199800 Rorug07G0221500
rosa_samantha	Rh7AG365400 Rh7BG357100 Rh7CG384300 Rh7DG360200
rosa_wichuraiana	Rw7G030930 Rw7G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	492, 1495
AccB1I	GGYRCC	2 cut(s)	952, 1378
AccI	GTMKAC	1 cut(s)	447
AccII	CGCG	3 cut(s)	508, 638, 1022
AclWI	GGATC	4 cut(s)	275, 626, 1403, 1416
AcoI	YGGCCR	2 cut(s)	364, 534
AcsI	RAATTY	2 cut(s)	1027, 1503
AcuI	CTGAAG	1 cut(s)	1223
AcyI	GRCGYC	2 cut(s)	489, 1492
AfiI	CCNNNNNNNGG	4 cut(s)	549, 1194, 1535, 1536
AflII	CTTAAG	1 cut(s)	1496
AflIII	ACRYGT	1 cut(s)	1020
AgsI	TTSAA	9 cut(s)	13, 385, 475, 850, 976, 1027, 1085, 1252, 1423
AhlI	ACTAGT	1 cut(s)	839
AjiI	CACGTC	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	1401
AleI	CACNNNNGTG	1 cut(s)	1329
AluBI	AGCT	6 cut(s)	661, 781, 877, 1098, 1112, 1515
AluI	AGCT	6 cut(s)	661, 781, 877, 1098, 1112, 1515
Alw26I	GTCTC	4 cut(s)	55, 589, 962, 1483
AlwI	GGATC	4 cut(s)	275, 626, 1403, 1416
Ama87I	CYCGRG	1 cut(s)	1280
AoxI	GGCC	8 cut(s)	364, 477, 521, 534, 569, 633, 1185, 1362
ApaI	GGGCCC	1 cut(s)	525
ApeKI	GCWGC	1 cut(s)	1109
ApoI	RAATTY	2 cut(s)	1027, 1503
Asp700I	GAANNNNTTC	2 cut(s)	470, 1461
AspA2I	CCTAGG	1 cut(s)	376
AspLEI	GCGC	4 cut(s)	505, 577, 640, 1545
AspS9I	GGNCC	4 cut(s)	521, 522, 892, 1363
AsuC2I	CCSGG	4 cut(s)	520, 565, 1281, 1282
AsuHPI	GGTGA	4 cut(s)	124, 319, 568, 712
AvaI	CYCGRG	1 cut(s)	1280
AvaII	GGWCC	1 cut(s)	892
AvrII	CCTAGG	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	525
BamHI	GGATCC	1 cut(s)	1408
BanI	GGYRCC	2 cut(s)	952, 1378
BanII	GRGCYC	2 cut(s)	525, 1281
BbsI	GAAGAC	1 cut(s)	1016
BbvI	GCAGC	1 cut(s)	1121
BccI	CCATC	7 cut(s)	245, 595, 691, 767, 1262, 1300, 1468
BciT130I	CCWGG	1 cut(s)	1403
BclI	TGATCA	2 cut(s)	1089, 1231
BcnI	CCSGG	4 cut(s)	520, 565, 1281, 1282
BcoDI	GTCTC	4 cut(s)	55, 589, 962, 1483
BcuI	ACTAGT	1 cut(s)	839
BfaI	CTAG	5 cut(s)	227, 377, 792, 840, 1113
BfrI	CTTAAG	1 cut(s)	1496
BisI	GCNGC	7 cut(s)	367, 480, 506, 537, 636, 1110, 1216
BlnI	CCTAGG	1 cut(s)	376
BlpI	GCTNAGC	1 cut(s)	918
BlsI	GCNGC	7 cut(s)	368, 481, 507, 538, 637, 1111, 1217
Bme1390I	CCNGG	5 cut(s)	520, 565, 1281, 1282, 1403
Bme18I	GGWCC	1 cut(s)	892
BmeT110I	CYCGRG	1 cut(s)	1280
BmgBI	CACGTC	1 cut(s)	325
BmgT120I	GGNCC	4 cut(s)	521, 522, 892, 1363
BmiI	GGNNCC	5 cut(s)	523, 894, 954, 1380, 1410
BmrFI	CCNGG	5 cut(s)	520, 565, 1281, 1282, 1403
BmsI	GCATC	1 cut(s)	1530
BpiI	GAAGAC	1 cut(s)	1016
Bpu1102I	GCTNAGC	1 cut(s)	918
BpuEI	CTTGAG	1 cut(s)	803
BpuMI	CCSGG	4 cut(s)	520, 565, 1281, 1282
Bsa29I	ATCGAT	1 cut(s)	1140
BsaHI	GRCGYC	2 cut(s)	489, 1492
BsaI	GGTCTC	1 cut(s)	589
BsaJI	CCNNGG	6 cut(s)	376, 531, 912, 946, 1280, 1281
BsaXI	ACNNNNNCTCC	8 cut(s)	24, 54, 260, 290, 419, 449, 1040, 1070
Bsc4I	CCNNNNNNNGG	4 cut(s)	549, 1194, 1535, 1536
Bse118I	RCCGGY	2 cut(s)	362, 571
Bse1I	ACTGG	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	691
BseBI	CCWGG	1 cut(s)	1403
BseCI	ATCGAT	1 cut(s)	1140
BseDI	CCNNGG	6 cut(s)	376, 531, 912, 946, 1280, 1281
BseGI	GGATG	8 cut(s)	84, 197, 396, 778, 1152, 1273, 1277, 1545
BseLI	CCNNNNNNNGG	4 cut(s)	549, 1194, 1535, 1536
BseMI	GCAATG	1 cut(s)	691
BseMII	CTCAG	3 cut(s)	681, 909, 1458
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	7 cut(s)	232, 262, 265, 338, 620, 800, 1501
BseSI	GKGCMC	1 cut(s)	525
BseX3I	CGGCCG	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	1121
BseYI	CCCAGC	1 cut(s)	803
Bsh1236I	CGCG	3 cut(s)	508, 638, 1022
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	8 cut(s)	366, 479, 523, 536, 571, 635, 1187, 1364
BshNI	GGYRCC	2 cut(s)	952, 1378
BshVI	ATCGAT	1 cut(s)	1140
BsiEI	CGRYCG	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	1280
BsiSI	CCGG	6 cut(s)	28, 363, 519, 564, 572, 1281
BslFI	GGGAC	2 cut(s)	641, 850
BslI	CCNNNNNNNGG	4 cut(s)	549, 1194, 1535, 1536
BsmAI	GTCTC	4 cut(s)	55, 589, 962, 1483
BsmBI	CGTCTC	1 cut(s)	1483
BsmFI	GGGAC	2 cut(s)	641, 850
BsnI	GGCC	8 cut(s)	366, 479, 523, 536, 571, 635, 1187, 1364
Bso31I	GGTCTC	1 cut(s)	589
BsoBI	CYCGRG	1 cut(s)	1280
Bsp120I	GGGCCC	1 cut(s)	521
Bsp1286I	GDGCHC	2 cut(s)	525, 1281
Bsp143I	GATC	7 cut(s)	280, 618, 1089, 1137, 1231, 1297, 1408
Bsp1720I	GCTNAGC	1 cut(s)	918
Bsp19I	CCATGG	1 cut(s)	946
BspANI	GGCC	8 cut(s)	366, 479, 523, 536, 571, 635, 1187, 1364
BspCNI	CTCAG	3 cut(s)	682, 910, 1459
BspDI	ATCGAT	1 cut(s)	1140
BspFNI	CGCG	3 cut(s)	508, 638, 1022
BspLI	GGNNCC	5 cut(s)	523, 894, 954, 1380, 1410
BspPI	GGATC	4 cut(s)	275, 626, 1403, 1416
BspT107I	GGYRCC	2 cut(s)	952, 1378
BspTI	CTTAAG	1 cut(s)	1496
BspTNI	GGTCTC	1 cut(s)	589
BsrDI	GCAATG	1 cut(s)	691
BsrFI	RCCGGY	2 cut(s)	362, 571
BsrI	ACTGG	1 cut(s)	395
BssAI	RCCGGY	2 cut(s)	362, 571
BssECI	CCNNGG	6 cut(s)	376, 531, 912, 946, 1280, 1281
BssMI	GATC	7 cut(s)	280, 618, 1089, 1137, 1231, 1297, 1408
BssNI	GRCGYC	2 cut(s)	489, 1492
BssT1I	CCWWGG	3 cut(s)	376, 531, 946
Bst2UI	CCWGG	1 cut(s)	1403
Bst4CI	ACNGT	2 cut(s)	373, 1331
Bst6I	CTCTTC	3 cut(s)	64, 193, 1478
BstACI	GRCGYC	2 cut(s)	489, 1492
BstAFI	CTTAAG	1 cut(s)	1496
BstC8I	GCNNGC	4 cut(s)	364, 573, 579, 682
BstDEI	CTNAG	4 cut(s)	690, 918, 1437, 1467
BstDSI	CCRYGG	1 cut(s)	946
BstF5I	GGATG	8 cut(s)	84, 197, 396, 778, 1152, 1273, 1277, 1545
BstFNI	CGCG	3 cut(s)	508, 638, 1022
BstHHI	GCGC	4 cut(s)	505, 577, 640, 1545
BstKTI	GATC	7 cut(s)	283, 621, 1092, 1140, 1234, 1300, 1411
BstMAI	GTCTC	4 cut(s)	55, 589, 962, 1483
BstMBI	GATC	7 cut(s)	280, 618, 1089, 1137, 1231, 1297, 1408
BstMCI	CGRYCG	1 cut(s)	367
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 686, 851, 1340
BstNI	CCWGG	1 cut(s)	1403
BstSCI	CCNGG	5 cut(s)	518, 563, 1279, 1280, 1401
BstSLI	GKGCMC	1 cut(s)	525
BstUI	CGCG	3 cut(s)	508, 638, 1022
BstV1I	GCAGC	1 cut(s)	1121
BstV2I	GAAGAC	1 cut(s)	1016
BstX2I	RGATCY	1 cut(s)	1408
BstXI	CCANNNNNNTGG	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	1408
BstZI	CGGCCG	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	1140
BsuRI	GGCC	8 cut(s)	366, 479, 523, 536, 571, 635, 1187, 1364
BsuTUI	ATCGAT	1 cut(s)	1140
BtgI	CCRYGG	1 cut(s)	946
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	8 cut(s)	84, 197, 396, 778, 1152, 1273, 1277, 1545
BtsI	GCAGTG	2 cut(s)	498, 1344
BtsIMutI	CAGTG	4 cut(s)	369, 388, 498, 1344
Cac8I	GCNNGC	4 cut(s)	364, 573, 579, 682
CfoI	GCGC	4 cut(s)	505, 577, 640, 1545
Cfr10I	RCCGGY	2 cut(s)	362, 571
Cfr13I	GGNCC	4 cut(s)	521, 522, 892, 1363
Cfr9I	CCCGGG	1 cut(s)	1280
ClaI	ATCGAT	1 cut(s)	1140
CseI	GACGC	1 cut(s)	1028
CsiI	ACCWGGT	1 cut(s)	1401
CviAII	CATG	3 cut(s)	485, 947, 1235
DdeI	CTNAG	4 cut(s)	690, 918, 1437, 1467
DpnI	GATC	7 cut(s)	282, 620, 1091, 1139, 1233, 1299, 1410
DpnII	GATC	7 cut(s)	280, 618, 1089, 1137, 1231, 1297, 1408
EaeI	YGGCCR	2 cut(s)	364, 534
EagI	CGGCCG	1 cut(s)	364
Eam1104I	CTCTTC	3 cut(s)	64, 193, 1478
EarI	CTCTTC	3 cut(s)	64, 193, 1478
EciI	GGCGGA	1 cut(s)	343
EclXI	CGGCCG	1 cut(s)	364
Eco130I	CCWWGG	3 cut(s)	376, 531, 946
Eco147I	AGGCCT	1 cut(s)	1187
Eco24I	GRGCYC	2 cut(s)	525, 1281
Eco31I	GGTCTC	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	892
Eco52I	CGGCCG	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	1223
Eco88I	CYCGRG	1 cut(s)	1280
EcoO109I	RGGNCCY	1 cut(s)	892
EcoRII	CCWGG	1 cut(s)	1401
EcoT14I	CCWWGG	3 cut(s)	376, 531, 946
EcoT38I	GRGCYC	2 cut(s)	525, 1281
ErhI	CCWWGG	3 cut(s)	376, 531, 946
Esp3I	CGTCTC	1 cut(s)	1483
FaeI	CATG	3 cut(s)	488, 950, 1238
FalI	AAGNNNNNCTT	2 cut(s)	881, 913
FaqI	GGGAC	2 cut(s)	641, 850
FatI	CATG	3 cut(s)	484, 946, 1234
FauI	CCCGC	1 cut(s)	1150
FbaI	TGATCA	2 cut(s)	1089, 1231
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	7 cut(s)	367, 480, 506, 537, 636, 1110, 1216
FokI	GGATG	8 cut(s)	71, 184, 383, 785, 1159, 1280, 1284, 1552
FriOI	GRGCYC	2 cut(s)	525, 1281
Fsp4HI	GCNGC	7 cut(s)	367, 480, 506, 537, 636, 1110, 1216
FspBI	CTAG	5 cut(s)	227, 377, 792, 840, 1113
GlaI	GCGC	4 cut(s)	504, 576, 639, 1544
GluI	GCNGC	7 cut(s)	367, 480, 506, 537, 636, 1110, 1216
GsaI	CCCAGC	1 cut(s)	807
HaeIII	GGCC	8 cut(s)	366, 479, 523, 536, 571, 635, 1187, 1364
HapII	CCGG	6 cut(s)	28, 363, 519, 564, 572, 1281
HgaI	GACGC	1 cut(s)	1028
HhaI	GCGC	4 cut(s)	505, 577, 640, 1545
Hin1I	GRCGYC	2 cut(s)	489, 1492
Hin1II	CATG	3 cut(s)	488, 950, 1238
Hin6I	GCGC	4 cut(s)	503, 575, 638, 1543
HinP1I	GCGC	4 cut(s)	503, 575, 638, 1543
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	2 cut(s)	779, 875
HinfI	GANTC	3 cut(s)	33, 218, 269
HpaII	CCGG	6 cut(s)	28, 363, 519, 564, 572, 1281
HphI	GGTGA	4 cut(s)	124, 319, 568, 712
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	3 cut(s)	280, 913, 1203
Hpy188III	TCNNGA	9 cut(s)	400, 622, 860, 1082, 1093, 1175, 1252, 1288, 1466
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	4 cut(s)	218, 296, 428, 1022
HpyAV	CCTTC	9 cut(s)	193, 260, 325, 348, 460, 856, 1177, 1255, 1435
HpyCH4III	ACNGT	2 cut(s)	373, 1331
HpyCH4IV	ACGT	5 cut(s)	324, 489, 513, 1076, 1492
HpyCH4V	TGCA	2 cut(s)	22, 882
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 686, 851, 1340
HpyF3I	CTNAG	4 cut(s)	690, 918, 1437, 1467
HpySE526I	ACGT	5 cut(s)	324, 489, 513, 1076, 1492
Hsp92I	GRCGYC	2 cut(s)	489, 1492
Hsp92II	CATG	3 cut(s)	488, 950, 1238
HspAI	GCGC	4 cut(s)	503, 575, 638, 1543
KroI	GCCGGC	2 cut(s)	362, 571
KroNI	GCCGGC	2 cut(s)	364, 573
Ksp22I	TGATCA	2 cut(s)	1089, 1231
Kzo9I	GATC	7 cut(s)	280, 618, 1089, 1137, 1231, 1297, 1408
LmnI	GCTCC	2 cut(s)	351, 1095
Lsp1109I	GCAGC	1 cut(s)	1121
LweI	GCATC	1 cut(s)	1530
MabI	ACCWGGT	1 cut(s)	1401
MaeI	CTAG	5 cut(s)	227, 377, 792, 840, 1113
MaeII	ACGT	5 cut(s)	324, 489, 513, 1076, 1492
MaeIII	GTNAC	3 cut(s)	325, 509, 1384
MalI	GATC	7 cut(s)	282, 620, 1091, 1139, 1233, 1299, 1410
MboI	GATC	7 cut(s)	280, 618, 1089, 1137, 1231, 1297, 1408
MflI	RGATCY	1 cut(s)	1408
MhlI	GDGCHC	2 cut(s)	525, 1281
MluCI	AATT	5 cut(s)	991, 1027, 1085, 1313, 1503
MluI	ACGCGT	1 cut(s)	1020
MlyI	GAGTC	2 cut(s)	27, 263
MmeI	TCCRAC	1 cut(s)	92
MroNI	GCCGGC	2 cut(s)	362, 571
MroXI	GAANNNNTTC	2 cut(s)	470, 1461
MseI	TTAA	4 cut(s)	714, 756, 1356, 1497
MslI	CAYNNNNRTG	1 cut(s)	1329
MspA1I	CMGCKG	2 cut(s)	45, 1157
MspCI	CTTAAG	1 cut(s)	1496
MspI	CCGG	6 cut(s)	28, 363, 519, 564, 572, 1281
MspR9I	CCNGG	5 cut(s)	520, 565, 1281, 1282, 1403
MvaI	CCWGG	1 cut(s)	1403
MvnI	CGCG	3 cut(s)	508, 638, 1022
MwoI	GCNNNNNNNGC	4 cut(s)	28, 686, 851, 1340
NaeI	GCCGGC	2 cut(s)	364, 573
NciI	CCSGG	4 cut(s)	520, 565, 1281, 1282
NcoI	CCATGG	1 cut(s)	946
NdeII	GATC	7 cut(s)	280, 618, 1089, 1137, 1231, 1297, 1408
NgoMIV	GCCGGC	2 cut(s)	362, 571
NlaIII	CATG	3 cut(s)	488, 950, 1238
NlaIV	GGNNCC	5 cut(s)	523, 894, 954, 1380, 1410
NmeAIII	GCCGAG	1 cut(s)	981
NmuCI	GTSAC	3 cut(s)	325, 509, 1384
OliI	CACNNNNGTG	1 cut(s)	1329
PceI	AGGCCT	1 cut(s)	1187
PcsI	WCGNNNNNNNCGW	1 cut(s)	1019
PdiI	GCCGGC	2 cut(s)	364, 573
PdmI	GAANNNNTTC	2 cut(s)	470, 1461
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	7 cut(s)	368, 481, 507, 538, 637, 1111, 1217
PleI	GAGTC	2 cut(s)	27, 263
PpsI	GAGTC	2 cut(s)	27, 263
PpuMI	RGGWCCY	1 cut(s)	892
Psp5II	RGGWCCY	1 cut(s)	892
Psp6I	CCWGG	1 cut(s)	1401
PspFI	CCCAGC	1 cut(s)	803
PspGI	CCWGG	1 cut(s)	1401
PspN4I	GGNNCC	5 cut(s)	523, 894, 954, 1380, 1410
PspOMI	GGGCCC	1 cut(s)	521
PspPI	GGNCC	4 cut(s)	521, 522, 892, 1363
PspPPI	RGGWCCY	1 cut(s)	892
PsuI	RGATCY	1 cut(s)	1408
RseI	CAYNNNNRTG	1 cut(s)	1329
SalI	GTCGAC	1 cut(s)	446
SaqAI	TTAA	4 cut(s)	714, 756, 1356, 1497
SatI	GCNGC	7 cut(s)	367, 480, 506, 537, 636, 1110, 1216
Sau3AI	GATC	7 cut(s)	280, 618, 1089, 1137, 1231, 1297, 1408
Sau96I	GGNCC	4 cut(s)	521, 522, 892, 1363
SchI	GAGTC	2 cut(s)	27, 263
ScrFI	CCNGG	5 cut(s)	520, 565, 1281, 1282, 1403
SduI	GDGCHC	2 cut(s)	525, 1281
SexAI	ACCWGGT	1 cut(s)	1401
SfaNI	GCATC	1 cut(s)	1530
SinI	GGWCC	1 cut(s)	892
SmaI	CCCGGG	1 cut(s)	1282
SmiMI	CAYNNNNRTG	1 cut(s)	1329
SmlI	CTYRAG	2 cut(s)	782, 1496
SmoI	CTYRAG	2 cut(s)	782, 1496
SpeI	ACTAGT	1 cut(s)	839
Sse9I	AATT	5 cut(s)	991, 1027, 1085, 1313, 1503
SseBI	AGGCCT	1 cut(s)	1187
SspMI	CTAG	5 cut(s)	227, 377, 792, 840, 1113
StuI	AGGCCT	1 cut(s)	1187
StyD4I	CCNGG	5 cut(s)	518, 563, 1279, 1280, 1401
StyI	CCWWGG	3 cut(s)	376, 531, 946
TaaI	ACNGT	2 cut(s)	373, 1331
TaiI	ACGT	5 cut(s)	327, 492, 516, 1079, 1495
TaqI	TCGA	5 cut(s)	213, 447, 643, 1140, 1176
TasI	AATT	5 cut(s)	991, 1027, 1085, 1313, 1503
TauI	GCSGC	6 cut(s)	369, 482, 508, 539, 638, 1218
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	4 cut(s)	714, 756, 1356, 1497
Tru9I	TTAA	4 cut(s)	714, 756, 1356, 1497
TscAI	CASTG	4 cut(s)	376, 395, 505, 1351
TseFI	GTSAC	3 cut(s)	325, 509, 1384
TseI	GCWGC	1 cut(s)	1109
Tsp45I	GTSAC	3 cut(s)	325, 509, 1384
TspDTI	ATGAA	5 cut(s)	896, 1025, 1146, 1163, 1274
TspGWI	ACGGA	2 cut(s)	280, 1028
TspMI	CCCGGG	1 cut(s)	1280
TspRI	CASTG	4 cut(s)	376, 395, 505, 1351
Vha464I	CTTAAG	1 cut(s)	1496
VpaK11BI	GGWCC	1 cut(s)	892
XapI	RAATTY	2 cut(s)	1027, 1503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XmaI	CCCGGG	1 cut(s)	1280
XmaJI	CCTAGG	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	447
XmnI	GAANNNNTTC	2 cut(s)	470, 1461
XspI	CTAG	5 cut(s)	227, 377, 792, 840, 1113
ZraI	GACGTC	2 cut(s)	490, 1493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.