Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005657

Physical Location & Seq

Genomic Coordinates Reverse (-)

21959486 .. 21969015

Gene Structure 9530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGGTTTTGTGCTGCATGTTCTCATATGGATTGGATTCGATAAAATATGAACAAGTTTGTATCTTTATTGGAGAATTGGACTTTCTCTGTATCTTGATCGGGCTTTCTGATTGTGCTCTTAGAACTGCTGAGTCTATACTCACTTTACTGTTAAAAATATCAGCAATCAGAATCGCAGAAGAAACTTACAGTGCATTTAATATTGGTAGACATATCTGTAGTCATGCTAGCATCAGTCACATGAAAAGTTTGCTTCTCCTTATTTCGAGAATAACAGCAATACTAAACACAGGGCAGATCCATCCAACCGTGGCAATGTTAGGAGCTAACGCTTCATATGCTGCAATACAATACATAAAACACATAATACAACTAAGCAGTTGTTTAACTGATGCATATAGATACTATTTGATTTTAGGTGGAGGCGCTCGATGGAGGTTAAAAGCTGTACTTGAGTGTATAATTGCGCCGCGTGACGTTGCCGGGCCCAAGACCTTGGCCGCCTCCATTGACAGGCTGGTGAGAGCCGGGAGGCCGGCGCAGGCGGTCTCTTTCTTTGAGAAGATGGAGGAGGACTATGGGCTCAAGAGGGACAAGGCCGCGCTTCGATTGGTTGTGGAGAAGCTCTGCGAGAATGGGTTTGCCAGCAATGCTGAGAAGATGGTGAAAGGTTTGGTTAATGAGTTTTTCCCTGATGAATATATATGCGATTTGCTTATTAAGGGGTGGTGTGTGGATGGGAAGCTTGACGAGGCTAGGAGATTGGCTGGGGAGATGTATAGGGGAGGGTTTGAGATTGGGACTAGTGCCTTCAATGCCATTCTTGATTGCGTGTGTAAGCTTTGCAGGAAGAAGGACCCCTTTCGGCTGCATTCTGAGGCTGAGCAGATTTTGGTGGATATGGACTTTCATGGGGTGCCGAGAAATGTGGAGACTTTCAATGTGCTGATTACTAATTTGTGTAAGATTAGGAAGACCGAGGACGCGTTGAATTTGTTTCATAGAATGGGGGAGTGGGGGTGTTCTCCTAACGAGACTACGTTTCTTGAATTGATCAGGAGCTTGTATCAGGCAGCTAGGGTTGGGGAGGGAGATGAAATGATCGATAGGATGAAATCAGCGGGGTTTGGGGAGGCTCTTGATAAGAAGGCCTATTTTGGGTTTCTGAAGATTTTGTGCGGCATTGAGAGGATTGATCATGCTTTGTCTGTTTTCAAGAAAATGAAGCAGGACGGCTGTGAGCCTGGGGTGAAGACTTATGATCTGCTGATGGGAAAATTGTATGCTCACAACCATGCTGATAAAGCCACTGCCCTGTTTAATGAGGCTCAAAAGAAAGAGGTGCCTGTGACACACAAGACATACCAGGTGGATCCGAAATACTTGAAGAAGCCAAAGGCTAAGAAGGAGAATACGAGGGAAACACTTCCTGAGAAGATGGCAAGGAAGAGGAGACGTCTTAAGCAAATTCGATTGAGCTTCGTAAAGAATCCCAAAAAGGGGATGCGCCGAACCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

506

Amino Acids

57.19

Weight (kDa)

9.1

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	297 - 352	2.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	309 - 355	5.8e-12	PPR repeat family
PPR_2	PF13041	389 - 425	3.3e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60960
fragaria_vesca	FvH4_5g29994 FvH4_5g29994 FvH4_5g29994 FvH4_7g15150
malus_domestica	MD06G1203500.v1.1 MD14G1214300.v1.1
prunus_persica	Prupe.5G207600_v2.0.a1
pyrus_communis	pycom06g18160 pycom14g17770 pycom16g18740
rosa_chinensis	RchiOBHm_Chr7g0224161 RchiOBHm_Chr7g0224171
rosa_laevigata	RLG00000001915
rosa_multiflora	Rmu_co8487915.1_g000001 Rmu_sc0008008.1_g000001 Rmu_sc0023501.1_g000005
rosa_roxburghii	Rroxscaffold_3G00235130 Rroxscaffold_3G00235140 Rroxscaffold_3G00235150
rosa_rugosa	Rorug07G0199800 Rorug07G0221500
rosa_samantha	Rh7AG365400 Rh7BG357100 Rh7CG384300 Rh7DG360200
rosa_wichuraiana	Rw7G030930 Rw7G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1459
AccB1I	GGYRCC	2 cut(s)	916, 1342
AccI	GTMKAC	1 cut(s)	208
AccII	CGCG	3 cut(s)	472, 602, 986
AciI	CCGC	6 cut(s)	470, 501, 545, 600, 1121, 1179
AclWI	GGATC	3 cut(s)	292, 1367, 1380
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	2 cut(s)	991, 1467
AcuI	CTGAAG	1 cut(s)	1187
AcyI	GRCGYC	1 cut(s)	1456
AfaI	GTAC	1 cut(s)	450
AfiI	CCNNNNNNNGG	4 cut(s)	513, 1158, 1499, 1500
AflII	CTTAAG	1 cut(s)	1460
AflIII	ACRYGT	1 cut(s)	984
AgsI	TTSAA	6 cut(s)	814, 940, 991, 1049, 1216, 1387
AhlI	ACTAGT	1 cut(s)	803
AjnI	CCWGG	2 cut(s)	1243, 1365
AluBI	AGCT	8 cut(s)	326, 446, 625, 745, 841, 1062, 1076, 1479
AluI	AGCT	8 cut(s)	326, 446, 625, 745, 841, 1062, 1076, 1479
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	4 cut(s)	553, 926, 1028, 1447
AlwI	GGATC	3 cut(s)	292, 1367, 1380
AoxI	GGCC	5 cut(s)	485, 498, 533, 597, 1149
ApaI	GGGCCC	1 cut(s)	489
ApeKI	GCWGC	4 cut(s)	12, 341, 868, 1073
ApoI	RAATTY	2 cut(s)	991, 1467
Asp700I	GAANNNNTTC	1 cut(s)	1425
AspLEI	GCGC	5 cut(s)	428, 469, 541, 604, 1509
AspS9I	GGNCC	3 cut(s)	485, 486, 856
AsuC2I	CCSGG	2 cut(s)	484, 529
AsuHPI	GGTGA	3 cut(s)	532, 676, 1261
AsuNHI	GCTAGC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	856
BaeGI	GKGCMC	1 cut(s)	489
BamHI	GGATCC	1 cut(s)	1372
BanI	GGYRCC	2 cut(s)	916, 1342
BanII	GRGCYC	2 cut(s)	489, 585
BbsI	GAAGAC	2 cut(s)	980, 1259
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	3 cut(s)	328, 855, 1085
BccI	CCATC	7 cut(s)	309, 426, 559, 655, 731, 1264, 1432
BceAI	ACGGC	1 cut(s)	1249
BciT130I	CCWGG	2 cut(s)	1245, 1367
BclI	TGATCA	2 cut(s)	1053, 1195
BcnI	CCSGG	2 cut(s)	484, 529
BcoDI	GTCTC	4 cut(s)	553, 926, 1028, 1447
BcuI	ACTAGT	1 cut(s)	803
BfaI	CTAG	4 cut(s)	228, 756, 804, 1077
BfmI	CTRYAG	1 cut(s)	217
BfoI	RGCGCY	1 cut(s)	429
BfrI	CTTAAG	1 cut(s)	1460
BisI	GCNGC	8 cut(s)	13, 342, 470, 501, 600, 869, 1074, 1180
BlpI	GCTNAGC	1 cut(s)	882
BlsI	GCNGC	8 cut(s)	14, 343, 471, 502, 601, 870, 1075, 1181
Bme1390I	CCNGG	4 cut(s)	484, 529, 1245, 1367
Bme18I	GGWCC	1 cut(s)	856
BmgT120I	GGNCC	3 cut(s)	485, 486, 856
BmiI	GGNNCC	5 cut(s)	487, 858, 918, 1344, 1374
BmrFI	CCNGG	4 cut(s)	484, 529, 1245, 1367
BmsI	GCATC	3 cut(s)	240, 382, 1494
BmtI	GCTAGC	1 cut(s)	231
BpiI	GAAGAC	2 cut(s)	980, 1259
Bpu1102I	GCTNAGC	1 cut(s)	882
BpuEI	CTTGAG	2 cut(s)	473, 569
BpuMI	CCSGG	2 cut(s)	484, 529
Bsa29I	ATCGAT	1 cut(s)	1104
BsaHI	GRCGYC	1 cut(s)	1456
BsaI	GGTCTC	1 cut(s)	553
BsaJI	CCNNGG	4 cut(s)	309, 495, 978, 1244
BsaXI	ACNNNNNCTCC	2 cut(s)	1004, 1034
Bsc4I	CCNNNNNNNGG	4 cut(s)	513, 1158, 1499, 1500
Bse118I	RCCGGY	1 cut(s)	535
Bse3DI	GCAATG	2 cut(s)	321, 655
BseBI	CCWGG	2 cut(s)	1245, 1367
BseCI	ATCGAT	1 cut(s)	1104
BseDI	CCNNGG	4 cut(s)	309, 495, 978, 1244
BseGI	GGATG	4 cut(s)	301, 742, 1116, 1509
BseLI	CCNNNNNNNGG	4 cut(s)	513, 1158, 1499, 1500
BseMI	GCAATG	2 cut(s)	321, 655
BseMII	CTCAG	5 cut(s)	120, 645, 867, 873, 1422
BseRI	GAGGAG	2 cut(s)	584, 1465
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	3 cut(s)	328, 855, 1085
BseYI	CCCAGC	1 cut(s)	767
Bsh1236I	CGCG	3 cut(s)	472, 602, 986
BshFI	GGCC	5 cut(s)	487, 500, 535, 599, 1151
BshNI	GGYRCC	2 cut(s)	916, 1342
BshVI	ATCGAT	1 cut(s)	1104
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	3 cut(s)	483, 528, 536
BslFI	GGGAC	2 cut(s)	605, 814
BslI	CCNNNNNNNGG	4 cut(s)	513, 1158, 1499, 1500
BsmAI	GTCTC	4 cut(s)	553, 926, 1028, 1447
BsmBI	CGTCTC	1 cut(s)	1447
BsmFI	GGGAC	2 cut(s)	605, 814
BsmI	GAATGC	1 cut(s)	871
BsnI	GGCC	5 cut(s)	487, 500, 535, 599, 1151
Bso31I	GGTCTC	1 cut(s)	553
Bsp120I	GGGCCC	1 cut(s)	485
Bsp1286I	GDGCHC	3 cut(s)	118, 489, 585
Bsp143I	GATC	7 cut(s)	96, 297, 1053, 1101, 1195, 1261, 1372
Bsp1720I	GCTNAGC	1 cut(s)	882
BspACI	CCGC	6 cut(s)	470, 501, 545, 600, 1121, 1179
BspANI	GGCC	5 cut(s)	487, 500, 535, 599, 1151
BspCNI	CTCAG	5 cut(s)	121, 646, 868, 874, 1423
BspDI	ATCGAT	1 cut(s)	1104
BspFNI	CGCG	3 cut(s)	472, 602, 986
BspLI	GGNNCC	5 cut(s)	487, 858, 918, 1344, 1374
BspOI	GCTAGC	1 cut(s)	231
BspPI	GGATC	3 cut(s)	292, 1367, 1380
BspT107I	GGYRCC	2 cut(s)	916, 1342
BspTI	CTTAAG	1 cut(s)	1460
BspTNI	GGTCTC	1 cut(s)	553
BsrDI	GCAATG	2 cut(s)	321, 655
BsrFI	RCCGGY	1 cut(s)	535
BssAI	RCCGGY	1 cut(s)	535
BssECI	CCNNGG	4 cut(s)	309, 495, 978, 1244
BssMI	GATC	7 cut(s)	96, 297, 1053, 1101, 1195, 1261, 1372
BssNI	GRCGYC	1 cut(s)	1456
BssT1I	CCWWGG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	1245, 1367
Bst4CI	ACNGT	3 cut(s)	150, 191, 310
Bst6I	CTCTTC	1 cut(s)	1442
BstACI	GRCGYC	1 cut(s)	1456
BstAFI	CTTAAG	1 cut(s)	1460
BstC8I	GCNNGC	4 cut(s)	229, 537, 543, 646
BstDEI	CTNAG	8 cut(s)	119, 129, 374, 654, 876, 882, 1401, 1431
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	4 cut(s)	301, 742, 1116, 1509
BstFNI	CGCG	3 cut(s)	472, 602, 986
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	5 cut(s)	428, 469, 541, 604, 1509
BstKTI	GATC	7 cut(s)	99, 300, 1056, 1104, 1198, 1264, 1375
BstMAI	GTCTC	4 cut(s)	553, 926, 1028, 1447
BstMBI	GATC	7 cut(s)	96, 297, 1053, 1101, 1195, 1261, 1372
BstMWI	GCNNNNNNNGC	4 cut(s)	338, 650, 815, 1304
BstNI	CCWGG	2 cut(s)	1245, 1367
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	4 cut(s)	482, 527, 1243, 1365
BstSFI	CTRYAG	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	489
BstUI	CGCG	3 cut(s)	472, 602, 986
BstV1I	GCAGC	3 cut(s)	328, 855, 1085
BstV2I	GAAGAC	2 cut(s)	980, 1259
BstX2I	RGATCY	2 cut(s)	297, 1372
BstXI	CCANNNNNNTGG	1 cut(s)	496
BstYI	RGATCY	2 cut(s)	297, 1372
Bsu15I	ATCGAT	1 cut(s)	1104
BsuRI	GGCC	5 cut(s)	487, 500, 535, 599, 1151
BsuTUI	ATCGAT	1 cut(s)	1104
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	4 cut(s)	301, 742, 1116, 1509
BtsI	GCAGTG	1 cut(s)	1308
BtsIMutI	CAGTG	2 cut(s)	196, 1308
Cac8I	GCNNGC	4 cut(s)	229, 537, 543, 646
CfoI	GCGC	5 cut(s)	428, 469, 541, 604, 1509
Cfr10I	RCCGGY	1 cut(s)	535
Cfr13I	GGNCC	3 cut(s)	485, 486, 856
ClaI	ATCGAT	1 cut(s)	1104
CseI	GACGC	1 cut(s)	992
CsiI	ACCWGGT	1 cut(s)	1365
Csp6I	GTAC	1 cut(s)	449
CviAII	CATG	6 cut(s)	16, 224, 241, 911, 1199, 1295
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	8 cut(s)	119, 129, 374, 654, 876, 882, 1401, 1431
DpnI	GATC	7 cut(s)	98, 299, 1055, 1103, 1197, 1263, 1374
DpnII	GATC	7 cut(s)	96, 297, 1053, 1101, 1195, 1261, 1372
EaeI	YGGCCR	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	1442
EarI	CTCTTC	1 cut(s)	1442
Eco130I	CCWWGG	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	1151
Eco24I	GRGCYC	2 cut(s)	489, 585
Eco31I	GGTCTC	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	856
Eco57I	CTGAAG	1 cut(s)	1187
EcoO109I	RGGNCCY	1 cut(s)	856
EcoRII	CCWGG	2 cut(s)	1243, 1365
EcoT14I	CCWWGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	397
EcoT38I	GRGCYC	2 cut(s)	489, 585
ErhI	CCWWGG	1 cut(s)	495
Esp3I	CGTCTC	1 cut(s)	1447
FaeI	CATG	6 cut(s)	19, 227, 244, 914, 1202, 1298
FalI	AAGNNNNNCTT	4 cut(s)	435, 467, 845, 877
FaqI	GGGAC	2 cut(s)	605, 814
FatI	CATG	6 cut(s)	15, 223, 240, 910, 1198, 1294
FauI	CCCGC	1 cut(s)	1114
FauNDI	CATATG	2 cut(s)	25, 337
FbaI	TGATCA	2 cut(s)	1053, 1195
FblI	GTMKAC	1 cut(s)	208
Fnu4HI	GCNGC	8 cut(s)	13, 342, 470, 501, 600, 869, 1074, 1180
FokI	GGATG	4 cut(s)	288, 749, 1123, 1516
FriOI	GRGCYC	2 cut(s)	489, 585
Fsp4HI	GCNGC	8 cut(s)	13, 342, 470, 501, 600, 869, 1074, 1180
FspBI	CTAG	4 cut(s)	228, 756, 804, 1077
GlaI	GCGC	5 cut(s)	427, 468, 540, 603, 1508
GluI	GCNGC	8 cut(s)	13, 342, 470, 501, 600, 869, 1074, 1180
GsaI	CCCAGC	1 cut(s)	771
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	5 cut(s)	487, 500, 535, 599, 1151
HapII	CCGG	3 cut(s)	483, 528, 536
HgaI	GACGC	1 cut(s)	992
HhaI	GCGC	5 cut(s)	428, 469, 541, 604, 1509
Hin1I	GRCGYC	1 cut(s)	1456
Hin1II	CATG	6 cut(s)	19, 227, 244, 914, 1202, 1298
Hin6I	GCGC	5 cut(s)	426, 467, 539, 602, 1507
HinP1I	GCGC	5 cut(s)	426, 467, 539, 602, 1507
HindIII	AAGCTT	2 cut(s)	743, 839
HinfI	GANTC	4 cut(s)	35, 131, 171, 1489
HpaII	CCGG	3 cut(s)	483, 528, 536
HphI	GGTGA	3 cut(s)	532, 676, 1261
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	5 cut(s)	109, 170, 877, 1167, 1377
Hpy188III	TCNNGA	9 cut(s)	94, 267, 586, 824, 1046, 1057, 1139, 1216, 1430
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	4 cut(s)	820, 847, 1141, 1399
HpyCH4III	ACNGT	3 cut(s)	150, 191, 310
HpyCH4IV	ACGT	3 cut(s)	477, 1040, 1456
HpyCH4V	TGCA	6 cut(s)	15, 194, 344, 395, 846, 871
HpyF10VI	GCNNNNNNNGC	4 cut(s)	338, 650, 815, 1304
HpyF3I	CTNAG	8 cut(s)	119, 129, 374, 654, 876, 882, 1401, 1431
HpySE526I	ACGT	3 cut(s)	477, 1040, 1456
Hsp92I	GRCGYC	1 cut(s)	1456
Hsp92II	CATG	6 cut(s)	19, 227, 244, 914, 1202, 1298
HspAI	GCGC	5 cut(s)	426, 467, 539, 602, 1507
KroI	GCCGGC	1 cut(s)	535
KroNI	GCCGGC	1 cut(s)	537
Ksp22I	TGATCA	2 cut(s)	1053, 1195
Kzo9I	GATC	7 cut(s)	96, 297, 1053, 1101, 1195, 1261, 1372
LmnI	GCTCC	2 cut(s)	323, 1059
Lsp1109I	GCAGC	3 cut(s)	328, 855, 1085
LweI	GCATC	3 cut(s)	240, 382, 1494
MabI	ACCWGGT	1 cut(s)	1365
MaeI	CTAG	4 cut(s)	228, 756, 804, 1077
MaeII	ACGT	3 cut(s)	477, 1040, 1456
MaeIII	GTNAC	3 cut(s)	236, 473, 1348
MalI	GATC	7 cut(s)	98, 299, 1055, 1103, 1197, 1263, 1374
MboI	GATC	7 cut(s)	96, 297, 1053, 1101, 1195, 1261, 1372
MflI	RGATCY	2 cut(s)	297, 1372
MhlI	GDGCHC	3 cut(s)	118, 489, 585
MluCI	AATT	7 cut(s)	74, 462, 955, 991, 1049, 1277, 1467
MluI	ACGCGT	1 cut(s)	984
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	329
Mph1103I	ATGCAT	1 cut(s)	397
MroNI	GCCGGC	1 cut(s)	535
MroXI	GAANNNNTTC	1 cut(s)	1425
MseI	TTAA	8 cut(s)	152, 198, 386, 440, 678, 720, 1320, 1461
MslI	CAYNNNNRTG	1 cut(s)	1293
MspA1I	CMGCKG	1 cut(s)	1121
MspCI	CTTAAG	1 cut(s)	1460
MspI	CCGG	3 cut(s)	483, 528, 536
MspR9I	CCNGG	4 cut(s)	484, 529, 1245, 1367
Mva1269I	GAATGC	1 cut(s)	871
MvaI	CCWGG	2 cut(s)	1245, 1367
MvnI	CGCG	3 cut(s)	472, 602, 986
MwoI	GCNNNNNNNGC	4 cut(s)	338, 650, 815, 1304
NaeI	GCCGGC	1 cut(s)	537
NciI	CCSGG	2 cut(s)	484, 529
NdeI	CATATG	2 cut(s)	25, 337
NdeII	GATC	7 cut(s)	96, 297, 1053, 1101, 1195, 1261, 1372
NgoMIV	GCCGGC	1 cut(s)	535
NheI	GCTAGC	1 cut(s)	227
NlaIII	CATG	6 cut(s)	19, 227, 244, 914, 1202, 1298
NlaIV	GGNNCC	5 cut(s)	487, 858, 918, 1344, 1374
NmeAIII	GCCGAG	1 cut(s)	945
NmuCI	GTSAC	3 cut(s)	236, 473, 1348
NsiI	ATGCAT	1 cut(s)	397
NspI	RCATGY	1 cut(s)	19
PceI	AGGCCT	1 cut(s)	1151
PctI	GAATGC	1 cut(s)	871
PdiI	GCCGGC	1 cut(s)	537
PdmI	GAANNNNTTC	1 cut(s)	1425
PfeI	GAWTC	3 cut(s)	35, 171, 1489
PkrI	GCNGC	8 cut(s)	14, 343, 471, 502, 601, 870, 1075, 1181
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	856
Psp5II	RGGWCCY	1 cut(s)	856
Psp6I	CCWGG	2 cut(s)	1243, 1365
PspFI	CCCAGC	1 cut(s)	767
PspGI	CCWGG	2 cut(s)	1243, 1365
PspN4I	GGNNCC	5 cut(s)	487, 858, 918, 1344, 1374
PspOMI	GGGCCC	1 cut(s)	485
PspPI	GGNCC	3 cut(s)	485, 486, 856
PspPPI	RGGWCCY	1 cut(s)	856
PsuI	RGATCY	2 cut(s)	297, 1372
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
RseI	CAYNNNNRTG	1 cut(s)	1293
SaqAI	TTAA	8 cut(s)	152, 198, 386, 440, 678, 720, 1320, 1461
SatI	GCNGC	8 cut(s)	13, 342, 470, 501, 600, 869, 1074, 1180
Sau3AI	GATC	7 cut(s)	96, 297, 1053, 1101, 1195, 1261, 1372
Sau96I	GGNCC	3 cut(s)	485, 486, 856
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	4 cut(s)	484, 529, 1245, 1367
SduI	GDGCHC	3 cut(s)	118, 489, 585
SexAI	ACCWGGT	1 cut(s)	1365
SfaNI	GCATC	3 cut(s)	240, 382, 1494
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	856
SmiMI	CAYNNNNRTG	1 cut(s)	1293
SmlI	CTYRAG	3 cut(s)	452, 584, 1460
SmoI	CTYRAG	3 cut(s)	452, 584, 1460
SpeI	ACTAGT	1 cut(s)	803
Sse9I	AATT	7 cut(s)	74, 462, 955, 991, 1049, 1277, 1467
SseBI	AGGCCT	1 cut(s)	1151
SsiI	CCGC	6 cut(s)	470, 501, 545, 600, 1121, 1179
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	4 cut(s)	228, 756, 804, 1077
StuI	AGGCCT	1 cut(s)	1151
StyD4I	CCNGG	4 cut(s)	482, 527, 1243, 1365
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	3 cut(s)	150, 191, 310
TaiI	ACGT	3 cut(s)	480, 1043, 1459
TaqI	TCGA	6 cut(s)	38, 266, 430, 607, 1104, 1471
TaqII	GACCGA	1 cut(s)	992
TasI	AATT	7 cut(s)	74, 462, 955, 991, 1049, 1277, 1467
TatI	WGTACW	1 cut(s)	448
TauI	GCSGC	4 cut(s)	472, 503, 602, 1182
TfiI	GAWTC	3 cut(s)	35, 171, 1489
Tru1I	TTAA	8 cut(s)	152, 198, 386, 440, 678, 720, 1320, 1461
Tru9I	TTAA	8 cut(s)	152, 198, 386, 440, 678, 720, 1320, 1461
TscAI	CASTG	2 cut(s)	196, 1315
TseFI	GTSAC	3 cut(s)	236, 473, 1348
TseI	GCWGC	4 cut(s)	12, 341, 868, 1073
Tsp45I	GTSAC	3 cut(s)	236, 473, 1348
TspDTI	ATGAA	9 cut(s)	63, 257, 324, 711, 899, 989, 1110, 1127, 1238
TspRI	CASTG	2 cut(s)	196, 1315
Vha464I	CTTAAG	1 cut(s)	1460
VpaK11BI	GGWCC	1 cut(s)	856
XapI	RAATTY	2 cut(s)	991, 1467
XceI	RCATGY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XmiI	GTMKAC	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	1425
XspI	CTAG	4 cut(s)	228, 756, 804, 1077
ZraI	GACGTC	1 cut(s)	1457
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.