Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023501.1

Orthogroup ID

OG0005657

Physical Location & Seq

Genomic Coordinates Forward (+)

26153 .. 26874

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023501.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 722 bp

atgaggtctttgaagcctctgcaactccggcgactcctactccgctgtgtctccacctcttctgctccaaccctccaaacccttatcccatttccctcaaccaaacccacccaccaaatccccaactctcactttctctctctaccccatttctctctccccaaatccttctcttcttcctcatccccaccacccctcgacgaatcccaactggcccaatccatctcctcccaccttctccaccaccaacccgactcctcctccgatcccctctccgtcgcccaagccctccaatccaccttccctcacgtcgcccccaccccttctctgctcctctccgtcctcaacctctccgccgaagccggccgcaccgtcctaggcttcaaccactggctcatccagaaccctaatttccaccacaccgacgacaccctctcctactttgtagactacttcggcaggaggaaggatttcaaggccgcccatgacgtcattctcactgcgccgcgtgacgttgccgggcccaagaccttggccgcctccattgacaggctggtgagagctgggaggccggcgcaggcggtctctttctttgagaagatggaggaggactatgggctaaagagggacaaggcggcgcttcgattggttgtggagaagctctgcgagaatgggtttgccagcaatgctgagaagatggtgaaaggtttggtgaatgagtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

240

Amino Acids

26.47

Weight (kDa)

9.14

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60960
fragaria_vesca	FvH4_5g29994 FvH4_5g29994 FvH4_5g29994 FvH4_7g15150
malus_domestica	MD06G1203500.v1.1 MD14G1214300.v1.1
prunus_persica	Prupe.5G207600_v2.0.a1
pyrus_communis	pycom06g18160 pycom14g17770 pycom16g18740
rosa_chinensis	RchiOBHm_Chr7g0224161 RchiOBHm_Chr7g0224171
rosa_laevigata	RLG00000001915
rosa_multiflora	Rmu_co8487915.1_g000001 Rmu_sc0008008.1_g000001 Rmu_sc0023501.1_g000005
rosa_roxburghii	Rroxscaffold_3G00235130 Rroxscaffold_3G00235140 Rroxscaffold_3G00235150
rosa_rugosa	Rorug07G0199800 Rorug07G0221500
rosa_samantha	Rh7AG365400 Rh7BG357100 Rh7CG384300 Rh7DG360200
rosa_wichuraiana	Rw7G030930 Rw7G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	492
AccI	GTMKAC	1 cut(s)	447
AccII	CGCG	1 cut(s)	508
AciI	CCGC	8 cut(s)	43, 354, 367, 480, 506, 537, 581, 635
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	2 cut(s)	364, 534
AcyI	GRCGYC	1 cut(s)	489
AfiI	CCNNNNNNNGG	1 cut(s)	549
AgsI	TTSAA	3 cut(s)	13, 385, 475
AjiI	CACGTC	1 cut(s)	310
AluBI	AGCT	2 cut(s)	563, 661
AluI	AGCT	2 cut(s)	563, 661
Alw26I	GTCTC	2 cut(s)	55, 589
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	6 cut(s)	213, 364, 477, 521, 534, 569
ApaI	GGGCCC	1 cut(s)	525
Asp700I	GAANNNNTTC	1 cut(s)	470
AspA2I	CCTAGG	1 cut(s)	376
AspLEI	GCGC	3 cut(s)	505, 577, 640
AspS9I	GGNCC	3 cut(s)	214, 521, 522
AsuC2I	CCSGG	1 cut(s)	520
AsuHPI	GGTGA	2 cut(s)	568, 712
AvrII	CCTAGG	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	525
BanII	GRGCYC	1 cut(s)	525
BccI	CCATC	3 cut(s)	230, 595, 691
BcnI	CCSGG	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	55, 589
BfaI	CTAG	1 cut(s)	377
BfoI	RGCGCY	1 cut(s)	641
BisI	GCNGC	5 cut(s)	367, 480, 506, 537, 636
BlnI	CCTAGG	1 cut(s)	376
BlsI	GCNGC	5 cut(s)	368, 481, 507, 538, 637
Bme1390I	CCNGG	1 cut(s)	520
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	3 cut(s)	214, 521, 522
BmiI	GGNNCC	1 cut(s)	523
BmrFI	CCNGG	1 cut(s)	520
BpuMI	CCSGG	1 cut(s)	520
BsaHI	GRCGYC	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	589
BsaJI	CCNNGG	2 cut(s)	376, 531
BsaXI	ACNNNNNCTCC	6 cut(s)	24, 54, 245, 275, 419, 449
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse118I	RCCGGY	2 cut(s)	362, 571
Bse1I	ACTGG	2 cut(s)	216, 395
Bse3DI	GCAATG	1 cut(s)	691
BseDI	CCNNGG	2 cut(s)	376, 531
BseGI	GGATG	2 cut(s)	182, 396
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMI	GCAATG	1 cut(s)	691
BseMII	CTCAG	1 cut(s)	681
BseNI	ACTGG	2 cut(s)	216, 395
BseRI	GAGGAG	5 cut(s)	217, 247, 250, 323, 620
BseSI	GKGCMC	1 cut(s)	525
BseX3I	CGGCCG	1 cut(s)	364
BseYI	CCCAGC	1 cut(s)	563
Bsh1236I	CGCG	1 cut(s)	508
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	6 cut(s)	215, 366, 479, 523, 536, 571
BsiEI	CGRYCG	1 cut(s)	367
BsiSI	CCGG	4 cut(s)	28, 363, 519, 572
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmAI	GTCTC	2 cut(s)	55, 589
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	6 cut(s)	215, 366, 479, 523, 536, 571
Bso31I	GGTCTC	1 cut(s)	589
Bsp120I	GGGCCC	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	8 cut(s)	43, 354, 367, 480, 506, 537, 581, 635
BspANI	GGCC	6 cut(s)	215, 366, 479, 523, 536, 571
BspCNI	CTCAG	1 cut(s)	682
BspFNI	CGCG	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	523
BspPI	GGATC	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	589
BsrDI	GCAATG	1 cut(s)	691
BsrFI	RCCGGY	2 cut(s)	362, 571
BsrI	ACTGG	2 cut(s)	216, 395
BssAI	RCCGGY	2 cut(s)	362, 571
BssECI	CCNNGG	2 cut(s)	376, 531
BssMI	GATC	1 cut(s)	265
BssNI	GRCGYC	1 cut(s)	489
BssT1I	CCWWGG	2 cut(s)	376, 531
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	2 cut(s)	64, 178
BstACI	GRCGYC	1 cut(s)	489
BstC8I	GCNNGC	4 cut(s)	364, 573, 579, 682
BstDEI	CTNAG	1 cut(s)	690
BstF5I	GGATG	2 cut(s)	182, 396
BstFNI	CGCG	1 cut(s)	508
BstH2I	RGCGCY	1 cut(s)	641
BstHHI	GCGC	3 cut(s)	505, 577, 640
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	2 cut(s)	55, 589
BstMBI	GATC	1 cut(s)	265
BstMCI	CGRYCG	1 cut(s)	367
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 686
BstSCI	CCNGG	1 cut(s)	518
BstSLI	GKGCMC	1 cut(s)	525
BstUI	CGCG	1 cut(s)	508
BstXI	CCANNNNNNTGG	1 cut(s)	532
BstZI	CGGCCG	1 cut(s)	364
BsuRI	GGCC	6 cut(s)	215, 366, 479, 523, 536, 571
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	182, 396
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	388, 498
Cac8I	GCNNGC	4 cut(s)	364, 573, 579, 682
CfoI	GCGC	3 cut(s)	505, 577, 640
Cfr10I	RCCGGY	2 cut(s)	362, 571
Cfr13I	GGNCC	3 cut(s)	214, 521, 522
CviAII	CATG	1 cut(s)	485
DdeI	CTNAG	1 cut(s)	690
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
EaeI	YGGCCR	2 cut(s)	364, 534
EagI	CGGCCG	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	64, 178
EarI	CTCTTC	2 cut(s)	64, 178
EciI	GGCGGA	1 cut(s)	343
EclXI	CGGCCG	1 cut(s)	364
Eco130I	CCWWGG	2 cut(s)	376, 531
Eco24I	GRGCYC	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	589
Eco52I	CGGCCG	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	376, 531
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	2 cut(s)	376, 531
FaeI	CATG	1 cut(s)	488
FaiI	YATR	2 cut(s)	486, 615
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	5 cut(s)	367, 480, 506, 537, 636
FokI	GGATG	2 cut(s)	169, 383
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	5 cut(s)	367, 480, 506, 537, 636
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	3 cut(s)	504, 576, 639
GluI	GCNGC	5 cut(s)	367, 480, 506, 537, 636
GsaI	CCCAGC	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	641
HaeIII	GGCC	6 cut(s)	215, 366, 479, 523, 536, 571
HapII	CCGG	4 cut(s)	28, 363, 519, 572
HhaI	GCGC	3 cut(s)	505, 577, 640
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	1 cut(s)	488
Hin6I	GCGC	3 cut(s)	503, 575, 638
HinP1I	GCGC	3 cut(s)	503, 575, 638
HinfI	GANTC	3 cut(s)	33, 203, 254
HpaII	CCGG	4 cut(s)	28, 363, 519, 572
HphI	GGTGA	2 cut(s)	568, 712
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	400
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	4 cut(s)	203, 281, 314, 428
HpyAV	CCTTC	5 cut(s)	178, 245, 310, 333, 460
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	3 cut(s)	309, 489, 513
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 686
HpyF3I	CTNAG	1 cut(s)	690
HpySE526I	ACGT	3 cut(s)	309, 489, 513
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	1 cut(s)	488
HspAI	GCGC	3 cut(s)	503, 575, 638
KroI	GCCGGC	2 cut(s)	362, 571
KroNI	GCCGGC	2 cut(s)	364, 573
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	2 cut(s)	70, 336
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	3 cut(s)	309, 489, 513
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	5 cut(s)	51, 165, 168, 610, 706
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	1 cut(s)	409
MlyI	GAGTC	2 cut(s)	27, 248
MmeI	TCCRAC	1 cut(s)	92
MroNI	GCCGGC	2 cut(s)	362, 571
MroXI	GAANNNNTTC	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	4 cut(s)	28, 363, 519, 572
MspR9I	CCNGG	1 cut(s)	520
MvnI	CGCG	1 cut(s)	508
MwoI	GCNNNNNNNGC	2 cut(s)	28, 686
NaeI	GCCGGC	2 cut(s)	364, 573
NciI	CCSGG	1 cut(s)	520
NdeII	GATC	1 cut(s)	265
NgoMIV	GCCGGC	2 cut(s)	362, 571
NlaIII	CATG	1 cut(s)	488
NlaIV	GGNNCC	1 cut(s)	523
NmuCI	GTSAC	1 cut(s)	509
PdiI	GCCGGC	2 cut(s)	364, 573
PdmI	GAANNNNTTC	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	5 cut(s)	368, 481, 507, 538, 637
PleI	GAGTC	2 cut(s)	27, 248
PpsI	GAGTC	2 cut(s)	27, 248
PspFI	CCCAGC	1 cut(s)	563
PspN4I	GGNNCC	1 cut(s)	523
PspOMI	GGGCCC	1 cut(s)	521
PspPI	GGNCC	3 cut(s)	214, 521, 522
SatI	GCNGC	5 cut(s)	367, 480, 506, 537, 636
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	3 cut(s)	214, 521, 522
SchI	GAGTC	2 cut(s)	27, 248
ScrFI	CCNGG	1 cut(s)	520
SduI	GDGCHC	1 cut(s)	525
Sse9I	AATT	1 cut(s)	409
SsiI	CCGC	8 cut(s)	43, 354, 367, 480, 506, 537, 581, 635
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	518
StyI	CCWWGG	2 cut(s)	376, 531
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	3 cut(s)	312, 492, 516
TaqI	TCGA	2 cut(s)	198, 643
TasI	AATT	1 cut(s)	409
TauI	GCSGC	5 cut(s)	369, 482, 508, 539, 638
TfiI	GAWTC	1 cut(s)	203
TscAI	CASTG	2 cut(s)	395, 505
TseFI	GTSAC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	509
TspGWI	ACGGA	2 cut(s)	265, 328
TspRI	CASTG	2 cut(s)	395, 505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XmaJI	CCTAGG	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	470
XspI	CTAG	1 cut(s)	377
ZraI	GACGTC	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.