Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005657

Physical Location & Seq

Genomic Coordinates Forward (+)

46015845 .. 46020295

Gene Structure 4451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20072

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGCAGGAGGACTATGGGCTCAAGAGGGTCAAGGCGGCACTTCGATTGGTTGTCAAGAAGCTTTGCGAAAATGGATTTGCCGGCAATGCTGAGAAGATGGTGAAAGGTTTGGTTAATGAGTTTTTCCCTGATGAATATATTTGTGATTTGCTTATTAAGGGGTGGTGTGTGGATGGGAAGCTTGAGGAGGCGAGGAGATTGGCTGGGGAGATGTATAGGAGAGGCTTCGACATTGGGACCAGTTCTTTCAATGTGATTCTTGATTGCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

90

Amino Acids

10.2

Weight (kDa)

6.26

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	43 - 89	1.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60960
fragaria_vesca	FvH4_5g29994 FvH4_5g29994 FvH4_5g29994 FvH4_7g15150
malus_domestica	MD06G1203500.v1.1 MD14G1214300.v1.1
prunus_persica	Prupe.5G207600_v2.0.a1
pyrus_communis	pycom06g18160 pycom14g17770 pycom16g18740
rosa_chinensis	RchiOBHm_Chr7g0224161 RchiOBHm_Chr7g0224171
rosa_laevigata	RLG00000001915
rosa_multiflora	Rmu_co8487915.1_g000001 Rmu_sc0008008.1_g000001 Rmu_sc0023501.1_g000005
rosa_roxburghii	Rroxscaffold_3G00235130 Rroxscaffold_3G00235140 Rroxscaffold_3G00235150
rosa_rugosa	Rorug07G0199800 Rorug07G0221500
rosa_samantha	Rh7AG365400 Rh7BG357100 Rh7CG384300 Rh7DG360200
rosa_wichuraiana	Rw7G030930 Rw7G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	250
AluBI	AGCT	2 cut(s)	61, 181
AluI	AGCT	2 cut(s)	61, 181
AspS9I	GGNCC	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	21
BccI	CCATC	2 cut(s)	91, 167
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	238
BpuEI	CTTGAG	2 cut(s)	5, 203
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	2 cut(s)	200, 208
BseYI	CCCAGC	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	21
BspACI	CCGC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	240
BssAI	RCCGGY	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	237
CviJI	RGCY	5 cut(s)	19, 61, 181, 203, 225
CviKI_1	RGCY	5 cut(s)	19, 61, 181, 203, 225
DdeI	CTNAG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	21
FaiI	YATR	3 cut(s)	15, 138, 216
FaqI	GGGAC	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	36
GsaI	CCCAGC	1 cut(s)	207
HapII	CCGG	1 cut(s)	81
HindIII	AAGCTT	2 cut(s)	59, 179
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	112
Hpy188III	TCNNGA	3 cut(s)	22, 55, 260
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	90
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
LpnPI	CCDG	4 cut(s)	94, 141, 189, 253
MboII	GAAGA	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	21
MnlI	CCTC	5 cut(s)	18, 178, 181, 186, 215
MroNI	GCCGGC	1 cut(s)	80
MseI	TTAA	2 cut(s)	114, 156
MspI	CCGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	86
NaeI	GCCGGC	1 cut(s)	82
NgoMIV	GCCGGC	1 cut(s)	80
NlaIV	GGNNCC	1 cut(s)	238
PdiI	GCCGGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	114, 156
SatI	GCNGC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	3 cut(s)	63, 109, 183
SinI	GGWCC	1 cut(s)	237
SmlI	CTYRAG	2 cut(s)	20, 182
SmoI	CTYRAG	2 cut(s)	20, 182
SsiI	CCGC	1 cut(s)	35
TaqI	TCGA	2 cut(s)	43, 228
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	2 cut(s)	114, 156
Tru9I	TTAA	2 cut(s)	114, 156
TspDTI	ATGAA	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.