Rw7G030940

Amino-transferase class IV

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005657
Physical Location & Seq
Forward (+)
43974157 .. 43977094
2938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030940.1

Sequence Viewer

Length: 402 bp
ATGGGTGTGGCAACTGAATATGGAGATGTTGCACAAATGAACGAGGGAGGAGATAAAAAGAAAATAGAGAAGAAAGAGAAGAGGGGCAAAGCAGGTGGTGAATTGGAGAAGGGTGGTTTTGCACTTGAGGAGAGGAAGAAAGGGAAAAGAAACCATGGAAAGAATTCAGGAATGGAATTGCAGGAATTCGTGGCTGAAAAAATGGGCATTGAGAGCACTGAAGTTCAAGAAAACATGTTCTCAAGGAATGATGTCAATGTGCAGTCAAAGTATACACTGCTTTCAGATAGTCCGAGACTTTTGCAGCATGCGGAGACTGTTCATGCTCCAAGTTCATGGGTAGGACTGCATTCTAATTCTTATGAGGACATACCCTGGATAGAGAGCAGTTTGAGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

133

Amino Acids

14.83

Weight (kDa)

5.65

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 272
AciI CCGC 1 cut(s) 311
AcsI RAATTY 2 cut(s) 163, 185
AcuI CTGAAG 1 cut(s) 240
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 374
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 2 cut(s) 289, 308
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 2 cut(s) 163, 185
Asp700I GAANNNNTTC 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 316
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 1 cut(s) 376
BcoDI GTCTC 2 cut(s) 289, 308
BfuAI ACCTGC 1 cut(s) 83
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 376
BmrFI CCNGG 1 cut(s) 376
BpuEI CTTGAG 2 cut(s) 146, 226
BsaJI CCNNGG 2 cut(s) 154, 374
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 2 cut(s) 154, 374
BseRI GAGGAG 2 cut(s) 63, 143
BseXI GCAGC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 218
BsmAI GTCTC 2 cut(s) 289, 308
BsmI GAATGC 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 218
Bsp19I CCATGG 1 cut(s) 154
BspACI CCGC 1 cut(s) 311
BspMI ACCTGC 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 154, 374
BssNAI GTATAC 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 154
Bst1107I GTATAC 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 309
BstDSI CCRYGG 1 cut(s) 154
BstMAI GTCTC 2 cut(s) 289, 308
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNI CCWGG 1 cut(s) 376
BstNSI RCATGY 2 cut(s) 238, 311
BstSCI CCNGG 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 316
BstXI CCANNNNNNTGG 1 cut(s) 336
BstZ17I GTATAC 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 2 cut(s) 216, 275
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 309
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 5 cut(s) 155, 235, 308, 323, 336
CviJI RGCY 1 cut(s) 194
CviKI_1 RGCY 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 240
EcoRI GAATTC 2 cut(s) 163, 185
EcoRII CCWGG 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 5 cut(s) 158, 238, 311, 326, 339
FaiI YATR 9 cut(s) 21, 156, 236, 273, 309, 324, 337, 363, 371
FatI CATG 5 cut(s) 154, 234, 307, 322, 335
FblI GTMKAC 1 cut(s) 272
Fnu4HI GCNGC 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 305
GluI GCNGC 1 cut(s) 305
Hin1II CATG 5 cut(s) 158, 238, 311, 326, 339
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 2 cut(s) 286, 294
Hpy188III TCNNGA 2 cut(s) 168, 227
Hpy8I GTNNAC 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 6 cut(s) 32, 122, 181, 262, 304, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
Hsp92II CATG 5 cut(s) 158, 238, 311, 326, 339
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 5 cut(s) 78, 153, 167, 361, 388
Lsp1109I GCAGC 1 cut(s) 316
MboII GAAGA 3 cut(s) 82, 91, 148
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 5 cut(s) 101, 163, 176, 185, 355
MnlI CCTC 6 cut(s) 37, 41, 75, 121, 126, 358
MroXI GAANNNNTTC 1 cut(s) 163
MspR9I CCNGG 1 cut(s) 376
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 1 cut(s) 376
MwoI GCNNNNNNNGC 1 cut(s) 213
NcoI CCATGG 1 cut(s) 154
NlaIII CATG 5 cut(s) 158, 238, 311, 326, 339
NspI RCATGY 2 cut(s) 238, 311
PaeI GCATGC 1 cut(s) 311
PaqCI CACCTGC 1 cut(s) 83
PciI ACATGT 1 cut(s) 234
PctI GAATGC 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 163
PkrI GCNGC 1 cut(s) 306
PscI ACATGT 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
SatI GCNGC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 376
SduI GDGCHC 1 cut(s) 218
SetI ASST 1 cut(s) 97
SmlI CTYRAG 2 cut(s) 125, 241
SmoI CTYRAG 2 cut(s) 125, 241
SphI GCATGC 1 cut(s) 311
Sse9I AATT 5 cut(s) 101, 163, 176, 185, 355
SsiI CCGC 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 374
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 1 cut(s) 319
TasI AATT 5 cut(s) 101, 163, 176, 185, 355
TscAI CASTG 2 cut(s) 223, 282
TseI GCWGC 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 53, 311, 324
TspRI CASTG 2 cut(s) 223, 282
XapI RAATTY 2 cut(s) 163, 185
XceI RCATGY 2 cut(s) 238, 311
XmiI GTMKAC 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.