FvH4_7g16801

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013646
Physical Location & Seq
Reverse (-)
14354734 .. 14355027
294 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16801.t1

Sequence Viewer

Length: 294 bp
ATGGCAATTGGAGCCTCACTTAGAGGATTTCGTGATTCTATGAGGCTTGTGATTACTATAGATGGCACATTTTTGAAAGGAAAGTACTTTGGAACTATGTTAGTGGCTGCATGCCGAGATGGAGAGAATCAAATATATCCTTTGGCATTTGGGGTAGTAGACTCAGAAAATGATGCATCATGGTCATGGTTTTTGACAAAATTGAAAGGGGCCATTGGAGATGTAGAGAATTTGGTCTTCATATCTGACCGACATGGAAGCATCGCCCAAGCCGTTGATTGTGTTTTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

98

Amino Acids

10.59

Weight (kDa)

5.14

Isoelectric Point (pI)

12.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 17 - 97 1.8e-17 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AcsI RAATTY 1 cut(s) 229
AfaI GTAC 1 cut(s) 86
AgsI TTSAA 2 cut(s) 76, 205
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 229
BbvI GCAGC 1 cut(s) 94
BccI CCATC 2 cut(s) 56, 113
BceAI ACGGC 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmcAI AGTACT 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 2 cut(s) 13, 211
BmsI GCATC 3 cut(s) 163, 185, 270
BpiI GAAGAC 1 cut(s) 229
BseMII CTCAG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 94
BshFI GGCC 1 cut(s) 212
BsnI GGCC 1 cut(s) 212
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 176
BspLI GGNNCC 2 cut(s) 13, 211
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 20, 163
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 229
BsuRI GGCC 1 cut(s) 212
BtgZI GCGATG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 85
CviAII CATG 4 cut(s) 111, 180, 186, 254
CviJI RGCY 5 cut(s) 14, 46, 107, 212, 272
CviKI_1 RGCY 5 cut(s) 14, 46, 107, 212, 272
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 2 cut(s) 20, 163
EcoT22I ATGCAT 1 cut(s) 178
FaeI CATG 4 cut(s) 114, 183, 189, 257
FatI CATG 4 cut(s) 110, 179, 185, 253
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
HaeIII GGCC 1 cut(s) 212
Hin1II CATG 4 cut(s) 114, 183, 189, 257
HinfI GANTC 3 cut(s) 35, 127, 161
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 166, 247
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 110, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 20, 163
Hsp92II CATG 4 cut(s) 114, 183, 189, 257
LmnI GCTCC 1 cut(s) 11
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 3 cut(s) 163, 185, 270
MboII GAAGA 1 cut(s) 229
MfeI CAATTG 1 cut(s) 6
MluCI AATT 3 cut(s) 6, 200, 229
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 3 cut(s) 17, 25, 36
Mph1103I ATGCAT 1 cut(s) 178
MslI CAYNNNNRTG 1 cut(s) 184
MunI CAATTG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 11
NlaIII CATG 4 cut(s) 114, 183, 189, 257
NlaIV GGNNCC 2 cut(s) 13, 211
NmeAIII GCCGAG 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 1 cut(s) 114
PaeI GCATGC 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PfeI GAWTC 2 cut(s) 35, 127
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PspN4I GGNNCC 2 cut(s) 13, 211
PspPI GGNCC 1 cut(s) 210
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 184
SatI GCNGC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 210
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 1 cut(s) 155
SfaNI GCATC 3 cut(s) 163, 185, 270
SfcI CTRYAG 1 cut(s) 57
SgeI CNNG 8 cut(s) 44, 59, 123, 128, 192, 198, 266, 281
SmiMI CAYNNNNRTG 1 cut(s) 184
SphI GCATGC 1 cut(s) 114
Sse9I AATT 3 cut(s) 6, 200, 229
TaqII GACCGA 1 cut(s) 264
TasI AATT 3 cut(s) 6, 200, 229
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 2 cut(s) 35, 127
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 229
XapI RAATTY 1 cut(s) 229
XceI RCATGY 1 cut(s) 114
XmiI GTMKAC 1 cut(s) 159
ZrmI AGTACT 1 cut(s) 86
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.