MULE transposase domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g29511 FvH4_6g24082 FvH4_7g16801 FvH4_7g16802 |
| rosa_multiflora | Rmu_sc0003594.1_g000006 Rmu_sc0010463.1_g000007 Rmu_ssc0000404.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00316740 |
| rosa_rugosa | Rorug01G0114800 Rorug02G0237500 Rorug04G0022000 Rorug04G0234800 Rorug06G0053400 Rorug06G0059100 |
| rosa_wichuraiana | Rw0G017920 Rw0G022210 Rw1G011530 Rw5G031600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 892 |
| AciI | CCGC | 1 cut(s) | 344 |
| AclWI | GGATC | 3 cut(s) | 707, 720, 950 |
| AcsI | RAATTY | 2 cut(s) | 932, 1085 |
| AfaI | GTAC | 1 cut(s) | 1009 |
| AgsI | TTSAA | 8 cut(s) | 170, 308, 314, 473, 622, 698, 770, 938 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 356, 388, 614, 646 |
| AluBI | AGCT | 5 cut(s) | 58, 210, 219, 593, 748 |
| AluI | AGCT | 5 cut(s) | 58, 210, 219, 593, 748 |
| Alw26I | GTCTC | 3 cut(s) | 37, 397, 1126 |
| AlwI | GGATC | 3 cut(s) | 707, 720, 950 |
| Ama87I | CYCGRG | 1 cut(s) | 948 |
| ApoI | RAATTY | 2 cut(s) | 932, 1085 |
| AseI | ATTAAT | 1 cut(s) | 90 |
| AspLEI | GCGC | 1 cut(s) | 996 |
| AsuHPI | GGTGA | 4 cut(s) | 17, 395, 698, 937 |
| AvaI | CYCGRG | 1 cut(s) | 948 |
| BamHI | GGATCC | 1 cut(s) | 712 |
| BanII | GRGCYC | 1 cut(s) | 326 |
| BauI | CACGAG | 1 cut(s) | 347 |
| BbsI | GAAGAC | 2 cut(s) | 549, 759 |
| BccI | CCATC | 3 cut(s) | 271, 514, 1122 |
| BclI | TGATCA | 2 cut(s) | 7, 823 |
| BcoDI | GTCTC | 3 cut(s) | 37, 397, 1126 |
| BfaI | CTAG | 5 cut(s) | 200, 749, 906, 1061, 1118 |
| BmeT110I | CYCGRG | 1 cut(s) | 948 |
| BmiI | GGNNCC | 3 cut(s) | 714, 886, 1137 |
| BpiI | GAAGAC | 2 cut(s) | 549, 759 |
| BpmI | CTGGAG | 1 cut(s) | 1154 |
| BsaJI | CCNNGG | 1 cut(s) | 949 |
| Bse1I | ACTGG | 1 cut(s) | 856 |
| BseDI | CCNNGG | 1 cut(s) | 949 |
| BseGI | GGATG | 1 cut(s) | 463 |
| BseMII | CTCAG | 2 cut(s) | 596, 608 |
| BseNI | ACTGG | 1 cut(s) | 856 |
| Bsh1236I | CGCG | 1 cut(s) | 892 |
| BsiHKCI | CYCGRG | 1 cut(s) | 948 |
| BsmAI | GTCTC | 3 cut(s) | 37, 397, 1126 |
| BsmI | GAATGC | 1 cut(s) | 496 |
| BsoBI | CYCGRG | 1 cut(s) | 948 |
| Bsp1286I | GDGCHC | 1 cut(s) | 326 |
| Bsp143I | GATC | 7 cut(s) | 7, 97, 316, 688, 712, 823, 942 |
| BspACI | CCGC | 1 cut(s) | 344 |
| BspCNI | CTCAG | 2 cut(s) | 597, 607 |
| BspFNI | CGCG | 1 cut(s) | 892 |
| BspLI | GGNNCC | 3 cut(s) | 714, 886, 1137 |
| BspPI | GGATC | 3 cut(s) | 707, 720, 950 |
| BsrI | ACTGG | 1 cut(s) | 856 |
| BssECI | CCNNGG | 1 cut(s) | 949 |
| BssMI | GATC | 7 cut(s) | 7, 97, 316, 688, 712, 823, 942 |
| BssSI | CACGAG | 1 cut(s) | 347 |
| Bst2BI | CACGAG | 1 cut(s) | 347 |
| Bst4CI | ACNGT | 1 cut(s) | 251 |
| BstC8I | GCNNGC | 2 cut(s) | 642, 838 |
| BstDEI | CTNAG | 3 cut(s) | 139, 594, 605 |
| BstF5I | GGATG | 1 cut(s) | 463 |
| BstFNI | CGCG | 1 cut(s) | 892 |
| BstHHI | GCGC | 1 cut(s) | 996 |
| BstKTI | GATC | 7 cut(s) | 10, 100, 319, 691, 715, 826, 945 |
| BstMAI | GTCTC | 3 cut(s) | 37, 397, 1126 |
| BstMBI | GATC | 7 cut(s) | 7, 97, 316, 688, 712, 823, 942 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 216, 500, 969 |
| BstNSI | RCATGY | 1 cut(s) | 988 |
| BstUI | CGCG | 1 cut(s) | 892 |
| BstV2I | GAAGAC | 2 cut(s) | 549, 759 |
| BstX2I | RGATCY | 1 cut(s) | 712 |
| BstYI | RGATCY | 1 cut(s) | 712 |
| BtsCI | GGATG | 1 cut(s) | 463 |
| Cac8I | GCNNGC | 2 cut(s) | 642, 838 |
| CfoI | GCGC | 1 cut(s) | 996 |
| Csp6I | GTAC | 1 cut(s) | 1008 |
| CviAII | CATG | 3 cut(s) | 244, 275, 985 |
| CviQI | GTAC | 1 cut(s) | 1008 |
| DdeI | CTNAG | 3 cut(s) | 139, 594, 605 |
| DpnI | GATC | 7 cut(s) | 9, 99, 318, 690, 714, 825, 944 |
| DpnII | GATC | 7 cut(s) | 7, 97, 316, 688, 712, 823, 942 |
| Eco24I | GRGCYC | 1 cut(s) | 326 |
| Eco32I | GATATC | 1 cut(s) | 913 |
| Eco88I | CYCGRG | 1 cut(s) | 948 |
| EcoRV | GATATC | 1 cut(s) | 913 |
| EcoT38I | GRGCYC | 1 cut(s) | 326 |
| FaeI | CATG | 3 cut(s) | 247, 278, 988 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 122, 154, 602, 634 |
| FatI | CATG | 3 cut(s) | 243, 274, 984 |
| FauI | CCCGC | 1 cut(s) | 351 |
| FbaI | TGATCA | 2 cut(s) | 7, 823 |
| FokI | GGATG | 1 cut(s) | 470 |
| FriOI | GRGCYC | 1 cut(s) | 326 |
| FspBI | CTAG | 5 cut(s) | 200, 749, 906, 1061, 1118 |
| GlaI | GCGC | 1 cut(s) | 995 |
| GsuI | CTGGAG | 1 cut(s) | 1154 |
| HhaI | GCGC | 1 cut(s) | 996 |
| Hin1II | CATG | 3 cut(s) | 247, 278, 988 |
| Hin6I | GCGC | 1 cut(s) | 994 |
| HinP1I | GCGC | 1 cut(s) | 994 |
| HinfI | GANTC | 5 cut(s) | 181, 448, 954, 1094, 1127 |
| HphI | GGTGA | 4 cut(s) | 17, 395, 698, 937 |
| Hpy166II | GTNNAC | 1 cut(s) | 568 |
| Hpy188I | TCNGA | 3 cut(s) | 321, 606, 1126 |
| Hpy188III | TCNNGA | 5 cut(s) | 95, 200, 821, 1091, 1133 |
| Hpy8I | GTNNAC | 1 cut(s) | 568 |
| HpyAV | CCTTC | 2 cut(s) | 58, 525 |
| HpyCH4III | ACNGT | 1 cut(s) | 251 |
| HpyCH4V | TGCA | 8 cut(s) | 118, 332, 537, 560, 740, 928, 972, 984 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 216, 500, 969 |
| HpyF3I | CTNAG | 3 cut(s) | 139, 594, 605 |
| Hsp92II | CATG | 3 cut(s) | 247, 278, 988 |
| HspAI | GCGC | 1 cut(s) | 994 |
| Ksp22I | TGATCA | 2 cut(s) | 7, 823 |
| Kzo9I | GATC | 7 cut(s) | 7, 97, 316, 688, 712, 823, 942 |
| LmnI | GCTCC | 3 cut(s) | 478, 508, 1135 |
| LpnPI | CCDG | 3 cut(s) | 108, 837, 1118 |
| MaeI | CTAG | 5 cut(s) | 200, 749, 906, 1061, 1118 |
| MaeIII | GTNAC | 3 cut(s) | 43, 149, 772 |
| MalI | GATC | 7 cut(s) | 9, 99, 318, 690, 714, 825, 944 |
| MboI | GATC | 7 cut(s) | 7, 97, 316, 688, 712, 823, 942 |
| MboII | GAAGA | 5 cut(s) | 326, 425, 504, 554, 764 |
| MfeI | CAATTG | 2 cut(s) | 327, 433 |
| MflI | RGATCY | 1 cut(s) | 712 |
| MhlI | GDGCHC | 1 cut(s) | 326 |
| MlyI | GAGTC | 2 cut(s) | 457, 1121 |
| MmeI | TCCRAC | 1 cut(s) | 354 |
| MnlI | CCTC | 6 cut(s) | 403, 871, 875, 898, 944, 1064 |
| MseI | TTAA | 5 cut(s) | 90, 666, 989, 1106, 1177 |
| MslI | CAYNNNNRTG | 1 cut(s) | 279 |
| MunI | CAATTG | 2 cut(s) | 327, 433 |
| Mva1269I | GAATGC | 1 cut(s) | 496 |
| MvnI | CGCG | 1 cut(s) | 892 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 216, 500, 969 |
| NdeII | GATC | 7 cut(s) | 7, 97, 316, 688, 712, 823, 942 |
| NlaIII | CATG | 3 cut(s) | 247, 278, 988 |
| NlaIV | GGNNCC | 3 cut(s) | 714, 886, 1137 |
| NspI | RCATGY | 1 cut(s) | 988 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 826 |
| PctI | GAATGC | 1 cut(s) | 496 |
| PfeI | GAWTC | 3 cut(s) | 181, 954, 1094 |
| PleI | GAGTC | 2 cut(s) | 456, 1121 |
| PpsI | GAGTC | 2 cut(s) | 456, 1121 |
| PshBI | ATTAAT | 1 cut(s) | 90 |
| PspN4I | GGNNCC | 3 cut(s) | 714, 886, 1137 |
| PsuI | RGATCY | 1 cut(s) | 712 |
| RsaI | GTAC | 1 cut(s) | 1009 |
| RsaNI | GTAC | 1 cut(s) | 1008 |
| RseI | CAYNNNNRTG | 1 cut(s) | 279 |
| SaqAI | TTAA | 5 cut(s) | 90, 666, 989, 1106, 1177 |
| Sau3AI | GATC | 7 cut(s) | 7, 97, 316, 688, 712, 823, 942 |
| SchI | GAGTC | 2 cut(s) | 457, 1121 |
| SduI | GDGCHC | 1 cut(s) | 326 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 279 |
| SsiI | CCGC | 1 cut(s) | 344 |
| SspI | AATATT | 2 cut(s) | 24, 556 |
| SspMI | CTAG | 5 cut(s) | 200, 749, 906, 1061, 1118 |
| TaaI | ACNGT | 1 cut(s) | 251 |
| TaqI | TCGA | 2 cut(s) | 14, 829 |
| TfiI | GAWTC | 3 cut(s) | 181, 954, 1094 |
| Tru1I | TTAA | 5 cut(s) | 90, 666, 989, 1106, 1177 |
| Tru9I | TTAA | 5 cut(s) | 90, 666, 989, 1106, 1177 |
| TspDTI | ATGAA | 8 cut(s) | 125, 260, 686, 773, 792, 804, 806, 1047 |
| TspGWI | ACGGA | 1 cut(s) | 491 |
| VspI | ATTAAT | 1 cut(s) | 90 |
| XapI | RAATTY | 2 cut(s) | 932, 1085 |
| XbaI | TCTAGA | 1 cut(s) | 199 |
| XceI | RCATGY | 1 cut(s) | 988 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 432 |
| XspI | CTAG | 5 cut(s) | 200, 749, 906, 1061, 1118 |