Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013646

Physical Location & Seq

Genomic Coordinates Reverse (-)

14355471 .. 14356235

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16802.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGTCAGTTCATGATTATTCTGTACTATGGTGGAAAGTGGGTCAACTCTCAGTATACGGGTGATCAATTAAAATCAATGATAGTCTCGAAAAATGTTACATACCAAGAGCTTCTGAATGAGTTGTTTCATCGGAGTGGTATTAATCCAGAGCAGTACAAAATGAAAGTGCATTATCAATATAAGAGCAACGTAGGGGTGTGCAGCACAATGGAGATAGTTGACAACGAAGATGTAGCTAGCTGGATATGTGATAGCCTTGCAGTGCAACCTAACAAGATTCCCTTATATATTACTCTGGAATGCAGCTTATCAAGATTTGTAAGTGAAAGTAATCAAGGTATGAACTGTAGACTTGACCCACCGTTTCAATATGATGATGGTATCTCAACAATTTTCTCTACTAAACTTGCAGATCATATTCCGGTTGCATTGAGCTCCCCCTATGAGCCATTAGTAGCAAACTCTGGGTTGGATAATGGTGATGATAGAGAGGAAGATGAGCATTTGAATTCCAATTGGGATAATGAGAGTCCAATGGACGATGTCGAAATTGAAACCGAGCAACCTATGAATGTCGAGTCTGCTCCATCATCTTCTTATCATAACAAGAGAAGGCACATAGAAGACTATGAGAATGTTACAATTGTAGACACCAATGAAGATGTTTTGGTAGTAGGTCAATTATACCTGAGTAAAAAAGCCTTGAAACAACATTTGGGTATGGTTGCAATGAGAAAGAATTACGAGTTTAAAGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

255

Amino Acids

29.08

Weight (kDa)

4.77

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013646)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29511 FvH4_6g24082 FvH4_7g16801 FvH4_7g16802
rosa_multiflora	Rmu_sc0003594.1_g000006 Rmu_sc0010463.1_g000007 Rmu_ssc0000404.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316740
rosa_rugosa	Rorug01G0114800 Rorug02G0237500 Rorug04G0022000 Rorug04G0234800 Rorug06G0053400 Rorug06G0059100
rosa_wichuraiana	Rw0G017920 Rw0G022210 Rw1G011530 Rw5G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	56, 352, 651
AcsI	RAATTY	1 cut(s)	511
AfaI	GTAC	2 cut(s)	26, 158
AgsI	TTSAA	4 cut(s)	371, 511, 557, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	701, 733
AluBI	AGCT	5 cut(s)	112, 239, 243, 309, 438
AluI	AGCT	5 cut(s)	112, 239, 243, 309, 438
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	1 cut(s)	91
ApeKI	GCWGC	2 cut(s)	204, 306
ApoI	RAATTY	1 cut(s)	511
AseI	ATTAAT	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	74, 494
AsuNHI	GCTAGC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	633
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	2 cut(s)	216, 318
BccI	CCATC	2 cut(s)	374, 598
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	349
BisI	GCNGC	2 cut(s)	205, 307
BlsI	GCNGC	2 cut(s)	206, 308
BmtI	GCTAGC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	633
BsaWI	WCCGGW	1 cut(s)	424
Bse3DI	GCAATG	1 cut(s)	738
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	2 cut(s)	65, 683
BseXI	GCAGC	2 cut(s)	216, 318
BsgI	GTGCAG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	425
BsmAI	GTCTC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	2 cut(s)	64, 415
BspCNI	CTCAG	2 cut(s)	64, 684
BspHI	TCATGA	1 cut(s)	12
BspOI	GCTAGC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	738
BssMI	GATC	2 cut(s)	64, 415
BssNAI	GTATAC	1 cut(s)	57
Bst1107I	GTATAC	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	350, 366
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	51, 692
BstKTI	GATC	2 cut(s)	67, 418
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	2 cut(s)	64, 415
BstSFI	CTRYAG	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	216, 318
BstV2I	GAAGAC	1 cut(s)	633
BstZ17I	GTATAC	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	241
CciI	TCATGA	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	25, 157
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	8 cut(s)	112, 239, 243, 258, 309, 438, 451, 704
CviKI_1	RGCY	8 cut(s)	112, 239, 243, 258, 309, 438, 451, 704
CviQI	GTAC	2 cut(s)	25, 157
DdeI	CTNAG	2 cut(s)	51, 692
DpnI	GATC	2 cut(s)	66, 417
DpnII	GATC	2 cut(s)	64, 415
DraI	TTTAAA	1 cut(s)	754
Ecl136II	GAGCTC	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	440
Eco53kI	GAGCTC	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	438
EcoRI	GAATTC	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	440
FaeI	CATG	1 cut(s)	16
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	1 cut(s)	12
FbaI	TGATCA	1 cut(s)	64
FblI	GTMKAC	3 cut(s)	56, 352, 651
Fnu4HI	GCNGC	2 cut(s)	205, 307
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	2 cut(s)	205, 307
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	2 cut(s)	205, 307
HapII	CCGG	1 cut(s)	425
Hin1II	CATG	1 cut(s)	16
HincII	GTYRAC	2 cut(s)	46, 223
HindII	GTYRAC	2 cut(s)	46, 223
HinfI	GANTC	4 cut(s)	4, 280, 532, 581
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	2 cut(s)	74, 494
Hpy166II	GTNNAC	5 cut(s)	46, 57, 223, 353, 652
Hpy188I	TCNGA	2 cut(s)	117, 135
Hpy188III	TCNNGA	5 cut(s)	13, 88, 149, 299, 315
Hpy8I	GTNNAC	5 cut(s)	46, 57, 223, 353, 652
HpyAV	CCTTC	1 cut(s)	609
HpyCH4III	ACNGT	2 cut(s)	350, 366
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	8 cut(s)	172, 204, 263, 268, 306, 413, 431, 731
HpyF3I	CTNAG	2 cut(s)	51, 692
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	16
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	64, 415
LmnI	GCTCC	2 cut(s)	443, 592
LpnPI	CCDG	6 cut(s)	162, 229, 284, 438, 453, 704
Lsp1109I	GCAGC	2 cut(s)	216, 318
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	97, 640
MalI	GATC	2 cut(s)	66, 417
MboI	GATC	2 cut(s)	64, 415
MboII	GAAGA	5 cut(s)	242, 509, 588, 638, 674
MfeI	CAATTG	2 cut(s)	517, 645
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	8 cut(s)	68, 393, 511, 517, 552, 645, 683, 742
MlyI	GAGTC	3 cut(s)	13, 541, 590
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	1 cut(s)	487
MseI	TTAA	3 cut(s)	71, 144, 753
MslI	CAYNNNNRTG	1 cut(s)	135
MspI	CCGG	1 cut(s)	425
MunI	CAATTG	2 cut(s)	517, 645
Mva1269I	GAATGC	1 cut(s)	308
NdeII	GATC	2 cut(s)	64, 415
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	1 cut(s)	16
PagI	TCATGA	1 cut(s)	12
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	280
PflFI	GACNNNGTC	1 cut(s)	545
PkrI	GCNGC	2 cut(s)	206, 308
PleI	GAGTC	3 cut(s)	12, 540, 589
PpsI	GAGTC	3 cut(s)	12, 540, 589
PshBI	ATTAAT	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	440
PsyI	GACNNNGTC	1 cut(s)	545
RsaI	GTAC	2 cut(s)	26, 158
RsaNI	GTAC	2 cut(s)	25, 157
RseI	CAYNNNNRTG	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	440
SaqAI	TTAA	3 cut(s)	71, 144, 753
SatI	GCNGC	2 cut(s)	205, 307
Sau3AI	GATC	2 cut(s)	64, 415
SchI	GAGTC	3 cut(s)	13, 541, 590
SduI	GDGCHC	1 cut(s)	440
SfcI	CTRYAG	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	135
Sse9I	AATT	8 cut(s)	68, 393, 511, 517, 552, 645, 683, 742
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	440
TaaI	ACNGT	2 cut(s)	350, 366
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	3 cut(s)	89, 549, 579
TasI	AATT	8 cut(s)	68, 393, 511, 517, 552, 645, 683, 742
TatI	WGTACW	2 cut(s)	24, 156
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	3 cut(s)	71, 144, 753
Tru9I	TTAA	3 cut(s)	71, 144, 753
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	2 cut(s)	204, 306
TspDTI	ATGAA	5 cut(s)	119, 179, 359, 587, 675
TspRI	CASTG	1 cut(s)	270
Tth111I	GACNNNGTC	1 cut(s)	545
VspI	ATTAAT	1 cut(s)	144
XapI	RAATTY	1 cut(s)	511
XmiI	GTMKAC	3 cut(s)	56, 352, 651
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.