MULE transposase domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g29511 FvH4_6g24082 FvH4_7g16801 FvH4_7g16802 |
| rosa_multiflora | Rmu_sc0003594.1_g000006 Rmu_sc0010463.1_g000007 Rmu_ssc0000404.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00316740 |
| rosa_rugosa | Rorug01G0114800 Rorug02G0237500 Rorug04G0022000 Rorug04G0234800 Rorug06G0053400 Rorug06G0059100 |
| rosa_wichuraiana | Rw0G017920 Rw0G022210 Rw1G011530 Rw5G031600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 389, 1682 |
| Acc36I | ACCTGC | 1 cut(s) | 1317 |
| AccI | GTMKAC | 1 cut(s) | 1134 |
| AccII | CGCG | 1 cut(s) | 745 |
| AciI | CCGC | 2 cut(s) | 1711, 2091 |
| AclWI | GGATC | 5 cut(s) | 560, 573, 865, 1333, 1590 |
| AcoI | YGGCCR | 1 cut(s) | 1937 |
| AcsI | RAATTY | 2 cut(s) | 646, 2043 |
| AcuI | CTGAAG | 1 cut(s) | 1992 |
| AfaI | GTAC | 9 cut(s) | 925, 1042, 1061, 1373, 1493, 1795, 2019, 2040, 2083 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1594, 2054 |
| AflII | CTTAAG | 1 cut(s) | 1343 |
| AflIII | ACRYGT | 1 cut(s) | 1796 |
| AjiI | CACGTC | 1 cut(s) | 1978 |
| AjnI | CCWGG | 1 cut(s) | 2020 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 467, 499, 2115 |
| Alw21I | GWGCWC | 2 cut(s) | 1480, 1886 |
| Alw26I | GTCTC | 2 cut(s) | 79, 1722 |
| AlwI | GGATC | 5 cut(s) | 560, 573, 865, 1333, 1590 |
| AoxI | GGCC | 3 cut(s) | 612, 1019, 1937 |
| ApeKI | GCWGC | 5 cut(s) | 294, 693, 836, 1082, 1361 |
| ApoI | RAATTY | 2 cut(s) | 646, 2043 |
| AspLEI | GCGC | 3 cut(s) | 390, 912, 1683 |
| AspS9I | GGNCC | 2 cut(s) | 1020, 1185 |
| AsuHPI | GGTGA | 3 cut(s) | 43, 852, 1577 |
| AsuII | TTCGAA | 1 cut(s) | 1411 |
| AvaII | GGWCC | 1 cut(s) | 1185 |
| BaeGI | GKGCMC | 2 cut(s) | 1474, 1834 |
| BalI | TGGCCA | 1 cut(s) | 1939 |
| BamHI | GGATCC | 1 cut(s) | 565 |
| BanII | GRGCYC | 1 cut(s) | 1480 |
| BauI | CACGAG | 1 cut(s) | 1473 |
| BbsI | GAAGAC | 5 cut(s) | 402, 1455, 1677, 1980, 2032 |
| Bbv12I | GWGCWC | 2 cut(s) | 1480, 1886 |
| BbvI | GCAGC | 5 cut(s) | 306, 705, 848, 1069, 1373 |
| BccI | CCATC | 6 cut(s) | 367, 1031, 1088, 1393, 1418, 2056 |
| BciT130I | CCWGG | 1 cut(s) | 2022 |
| BciVI | GTATCC | 1 cut(s) | 1390 |
| BclI | TGATCA | 3 cut(s) | 52, 676, 1750 |
| BcoDI | GTCTC | 2 cut(s) | 79, 1722 |
| BfaI | CTAG | 5 cut(s) | 228, 537, 759, 842, 1554 |
| BfmI | CTRYAG | 4 cut(s) | 1032, 1266, 1849, 2052 |
| BfrI | CTTAAG | 1 cut(s) | 1343 |
| BfuAI | ACCTGC | 1 cut(s) | 1317 |
| BfuI | GTATCC | 1 cut(s) | 1390 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1936 |
| BglII | AGATCT | 1 cut(s) | 305 |
| BisI | GCNGC | 5 cut(s) | 295, 694, 837, 1083, 1362 |
| BlsI | GCNGC | 5 cut(s) | 296, 695, 838, 1084, 1363 |
| BmcAI | AGTACT | 1 cut(s) | 1061 |
| Bme1390I | CCNGG | 1 cut(s) | 2022 |
| Bme18I | GGWCC | 1 cut(s) | 1185 |
| BmgBI | CACGTC | 1 cut(s) | 1978 |
| BmgT120I | GGNCC | 2 cut(s) | 1020, 1185 |
| BmiI | GGNNCC | 6 cut(s) | 567, 739, 988, 1069, 1186, 1282 |
| BmrFI | CCNGG | 1 cut(s) | 2022 |
| BmsI | GCATC | 6 cut(s) | 1138, 1296, 1540, 1618, 2053, 2078 |
| BpiI | GAAGAC | 5 cut(s) | 402, 1455, 1677, 1980, 2032 |
| Bpu10I | CCTNAGC | 1 cut(s) | 181 |
| Bpu14I | TTCGAA | 1 cut(s) | 1411 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1815 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1594, 2054 |
| Bse1I | ACTGG | 1 cut(s) | 1940 |
| Bse3DI | GCAATG | 2 cut(s) | 1236, 1518 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1815 |
| BseBI | CCWGG | 1 cut(s) | 2022 |
| BseGI | GGATG | 3 cut(s) | 1408, 1511, 1969 |
| BseJI | GATNNNNATC | 1 cut(s) | 1815 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1594, 2054 |
| BseMI | GCAATG | 2 cut(s) | 1236, 1518 |
| BseMII | CTCAG | 2 cut(s) | 264, 321 |
| BseNI | ACTGG | 1 cut(s) | 1940 |
| BseRI | GAGGAG | 1 cut(s) | 2112 |
| BseSI | GKGCMC | 2 cut(s) | 1474, 1834 |
| BseXI | GCAGC | 5 cut(s) | 306, 705, 848, 1069, 1373 |
| BsgI | GTGCAG | 1 cut(s) | 2000 |
| Bsh1236I | CGCG | 1 cut(s) | 745 |
| BshFI | GGCC | 3 cut(s) | 614, 1021, 1939 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1480, 1886 |
| BslFI | GGGAC | 1 cut(s) | 1198 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1594, 2054 |
| BsmAI | GTCTC | 2 cut(s) | 79, 1722 |
| BsmFI | GGGAC | 1 cut(s) | 1198 |
| BsmI | GAATGC | 2 cut(s) | 349, 390 |
| BsnI | GGCC | 3 cut(s) | 614, 1021, 1939 |
| Bsp119I | TTCGAA | 1 cut(s) | 1411 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1474, 1480, 1834, 1886 |
| Bsp1407I | TGTACA | 2 cut(s) | 1793, 2081 |
| BspACI | CCGC | 2 cut(s) | 1711, 2091 |
| BspANI | GGCC | 3 cut(s) | 614, 1021, 1939 |
| BspCNI | CTCAG | 2 cut(s) | 263, 322 |
| BspFNI | CGCG | 1 cut(s) | 745 |
| BspLI | GGNNCC | 6 cut(s) | 567, 739, 988, 1069, 1186, 1282 |
| BspMI | ACCTGC | 1 cut(s) | 1317 |
| BspPI | GGATC | 5 cut(s) | 560, 573, 865, 1333, 1590 |
| BspT104I | TTCGAA | 1 cut(s) | 1411 |
| BspTI | CTTAAG | 1 cut(s) | 1343 |
| BsrDI | GCAATG | 2 cut(s) | 1236, 1518 |
| BsrGI | TGTACA | 2 cut(s) | 1793, 2081 |
| BsrI | ACTGG | 1 cut(s) | 1940 |
| BssSI | CACGAG | 1 cut(s) | 1473 |
| Bst2BI | CACGAG | 1 cut(s) | 1473 |
| Bst2UI | CCWGG | 1 cut(s) | 2022 |
| Bst4CI | ACNGT | 5 cut(s) | 20, 1771, 1843, 2038, 2111 |
| BstAFI | CTTAAG | 1 cut(s) | 1343 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1844 |
| BstAUI | TGTACA | 2 cut(s) | 1793, 2081 |
| BstBI | TTCGAA | 1 cut(s) | 1411 |
| BstC8I | GCNNGC | 5 cut(s) | 491, 495, 691, 1087, 1285 |
| BstDEI | CTNAG | 4 cut(s) | 181, 250, 330, 1589 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1592 |
| BstF5I | GGATG | 3 cut(s) | 1408, 1511, 1969 |
| BstFNI | CGCG | 1 cut(s) | 745 |
| BstHHI | GCGC | 3 cut(s) | 390, 912, 1683 |
| BstMAI | GTCTC | 2 cut(s) | 79, 1722 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 824, 833, 986, 1844, 1936 |
| BstNI | CCWGG | 1 cut(s) | 2022 |
| BstNSI | RCATGY | 4 cut(s) | 493, 1089, 1800, 1882 |
| BstSCI | CCNGG | 1 cut(s) | 2020 |
| BstSFI | CTRYAG | 4 cut(s) | 1032, 1266, 1849, 2052 |
| BstSLI | GKGCMC | 2 cut(s) | 1474, 1834 |
| BstUI | CGCG | 1 cut(s) | 745 |
| BstV1I | GCAGC | 5 cut(s) | 306, 705, 848, 1069, 1373 |
| BstV2I | GAAGAC | 5 cut(s) | 402, 1455, 1677, 1980, 2032 |
| BstX2I | RGATCY | 3 cut(s) | 305, 565, 1338 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1078, 1249 |
| BstYI | RGATCY | 3 cut(s) | 305, 565, 1338 |
| BsuI | GTATCC | 1 cut(s) | 1390 |
| BsuRI | GGCC | 3 cut(s) | 614, 1021, 1939 |
| BtrI | CACGTC | 1 cut(s) | 1978 |
| BtsCI | GGATG | 3 cut(s) | 1408, 1511, 1969 |
| BtsIMutI | CAGTG | 3 cut(s) | 258, 1776, 1875 |
| BveI | ACCTGC | 1 cut(s) | 1317 |
| Cac8I | GCNNGC | 5 cut(s) | 491, 495, 691, 1087, 1285 |
| CfoI | GCGC | 3 cut(s) | 390, 912, 1683 |
| Cfr13I | GGNCC | 2 cut(s) | 1020, 1185 |
| Csp6I | GTAC | 9 cut(s) | 924, 1041, 1060, 1372, 1492, 1794, 2018, 2039, 2082 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1678, 1713 |
| CviQI | GTAC | 9 cut(s) | 924, 1041, 1060, 1372, 1492, 1794, 2018, 2039, 2082 |
| DdeI | CTNAG | 4 cut(s) | 181, 250, 330, 1589 |
| DraI | TTTAAA | 1 cut(s) | 520 |
| EaeI | YGGCCR | 1 cut(s) | 1937 |
| Ecl136II | GAGCTC | 1 cut(s) | 1478 |
| Eco24I | GRGCYC | 1 cut(s) | 1480 |
| Eco32I | GATATC | 1 cut(s) | 766 |
| Eco47I | GGWCC | 1 cut(s) | 1185 |
| Eco53kI | GAGCTC | 1 cut(s) | 1478 |
| Eco57I | CTGAAG | 1 cut(s) | 1992 |
| EcoICRI | GAGCTC | 1 cut(s) | 1478 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1592 |
| EcoRI | GAATTC | 1 cut(s) | 2043 |
| EcoRII | CCWGG | 1 cut(s) | 2020 |
| EcoRV | GATATC | 1 cut(s) | 766 |
| EcoT22I | ATGCAT | 1 cut(s) | 1738 |
| EcoT38I | GRGCYC | 1 cut(s) | 1480 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 164, 196, 455, 487 |
| FaqI | GGGAC | 1 cut(s) | 1198 |
| FauI | CCCGC | 1 cut(s) | 1704 |
| FauNDI | CATATG | 1 cut(s) | 1707 |
| FbaI | TGATCA | 3 cut(s) | 52, 676, 1750 |
| FblI | GTMKAC | 1 cut(s) | 1134 |
| Fnu4HI | GCNGC | 5 cut(s) | 295, 694, 837, 1083, 1362 |
| FokI | GGATG | 3 cut(s) | 1415, 1498, 1976 |
| FriOI | GRGCYC | 1 cut(s) | 1480 |
| Fsp4HI | GCNGC | 5 cut(s) | 295, 694, 837, 1083, 1362 |
| FspAI | RTGCGCAY | 1 cut(s) | 389 |
| FspBI | CTAG | 5 cut(s) | 228, 537, 759, 842, 1554 |
| FspI | TGCGCA | 2 cut(s) | 389, 1682 |
| GlaI | GCGC | 3 cut(s) | 389, 911, 1682 |
| GluI | GCNGC | 5 cut(s) | 295, 694, 837, 1083, 1362 |
| HaeIII | GGCC | 3 cut(s) | 614, 1021, 1939 |
| HhaI | GCGC | 3 cut(s) | 390, 912, 1683 |
| Hin6I | GCGC | 3 cut(s) | 388, 910, 1681 |
| HinP1I | GCGC | 3 cut(s) | 388, 910, 1681 |
| HincII | GTYRAC | 1 cut(s) | 211 |
| HindII | GTYRAC | 1 cut(s) | 211 |
| HindIII | AAGCTT | 2 cut(s) | 816, 1541 |
| HinfI | GANTC | 7 cut(s) | 268, 585, 869, 1010, 1102, 1136, 1526 |
| HphI | GGTGA | 3 cut(s) | 43, 852, 1577 |
| Hpy166II | GTNNAC | 7 cut(s) | 34, 211, 421, 526, 1135, 1774, 2082 |
| Hpy188I | TCNGA | 5 cut(s) | 123, 459, 1141, 1222, 1384 |
| Hpy188III | TCNNGA | 6 cut(s) | 287, 303, 674, 1007, 1802, 1814 |
| Hpy8I | GTNNAC | 7 cut(s) | 34, 211, 421, 526, 1135, 1774, 2082 |
| HpyAV | CCTTC | 1 cut(s) | 100 |
| HpyCH4III | ACNGT | 5 cut(s) | 20, 1771, 1843, 2038, 2111 |
| HpyCH4IV | ACGT | 2 cut(s) | 1977, 2029 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 824, 833, 986, 1844, 1936 |
| HpyF3I | CTNAG | 4 cut(s) | 181, 250, 330, 1589 |
| HpySE526I | ACGT | 2 cut(s) | 1977, 2029 |
| HspAI | GCGC | 3 cut(s) | 388, 910, 1681 |
| Ksp22I | TGATCA | 3 cut(s) | 52, 676, 1750 |
| LmnI | GCTCC | 5 cut(s) | 701, 986, 1280, 1643, 1889 |
| Lsp1109I | GCAGC | 5 cut(s) | 306, 705, 848, 1069, 1373 |
| LweI | GCATC | 6 cut(s) | 1138, 1296, 1540, 1618, 2053, 2078 |
| MaeI | CTAG | 5 cut(s) | 228, 537, 759, 842, 1554 |
| MaeII | ACGT | 2 cut(s) | 1977, 2029 |
| MaeIII | GTNAC | 2 cut(s) | 85, 239 |
| MfeI | CAATTG | 2 cut(s) | 981, 1722 |
| MflI | RGATCY | 3 cut(s) | 305, 565, 1338 |
| MhlI | GDGCHC | 4 cut(s) | 1474, 1480, 1834, 1886 |
| MlsI | TGGCCA | 1 cut(s) | 1939 |
| MluNI | TGGCCA | 1 cut(s) | 1939 |
| MlyI | GAGTC | 2 cut(s) | 579, 1130 |
| MmeI | TCCRAC | 4 cut(s) | 639, 811, 1539, 1924 |
| Mox20I | TGGCCA | 1 cut(s) | 1939 |
| Mph1103I | ATGCAT | 1 cut(s) | 1738 |
| MscI | TGGCCA | 1 cut(s) | 1939 |
| MseI | TTAA | 7 cut(s) | 519, 798, 1344, 1545, 1644, 1655, 1778 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1076, 1159, 2109 |
| Msp20I | TGGCCA | 1 cut(s) | 1939 |
| MspCI | CTTAAG | 1 cut(s) | 1343 |
| MspR9I | CCNGG | 1 cut(s) | 2022 |
| MunI | CAATTG | 2 cut(s) | 981, 1722 |
| Mva1269I | GAATGC | 2 cut(s) | 349, 390 |
| MvaI | CCWGG | 1 cut(s) | 2022 |
| MvnI | CGCG | 1 cut(s) | 745 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 824, 833, 986, 1844, 1936 |
| NdeI | CATATG | 1 cut(s) | 1707 |
| NlaIV | GGNNCC | 6 cut(s) | 567, 739, 988, 1069, 1186, 1282 |
| NmuCI | GTSAC | 1 cut(s) | 239 |
| NsbI | TGCGCA | 2 cut(s) | 389, 1682 |
| NsiI | ATGCAT | 1 cut(s) | 1738 |
| NspI | RCATGY | 4 cut(s) | 493, 1089, 1800, 1882 |
| NspV | TTCGAA | 1 cut(s) | 1411 |
| PaeI | GCATGC | 2 cut(s) | 493, 1089 |
| PciI | ACATGT | 1 cut(s) | 1796 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 679 |
| PctI | GAATGC | 2 cut(s) | 349, 390 |
| PfeI | GAWTC | 5 cut(s) | 268, 869, 1010, 1102, 1526 |
| PkrI | GCNGC | 5 cut(s) | 296, 695, 838, 1084, 1363 |
| PleI | GAGTC | 2 cut(s) | 579, 1130 |
| PpsI | GAGTC | 2 cut(s) | 579, 1130 |
| PscI | ACATGT | 1 cut(s) | 1796 |
| Psp124BI | GAGCTC | 1 cut(s) | 1480 |
| Psp6I | CCWGG | 1 cut(s) | 2020 |
| PspGI | CCWGG | 1 cut(s) | 2020 |
| PspN4I | GGNNCC | 6 cut(s) | 567, 739, 988, 1069, 1186, 1282 |
| PspPI | GGNCC | 2 cut(s) | 1020, 1185 |
| PsuI | RGATCY | 3 cut(s) | 305, 565, 1338 |
| RsaI | GTAC | 9 cut(s) | 925, 1042, 1061, 1373, 1493, 1795, 2019, 2040, 2083 |
| RsaNI | GTAC | 9 cut(s) | 924, 1041, 1060, 1372, 1492, 1794, 2018, 2039, 2082 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1076, 1159, 2109 |
| SacI | GAGCTC | 1 cut(s) | 1480 |
| SaqAI | TTAA | 7 cut(s) | 519, 798, 1344, 1545, 1644, 1655, 1778 |
| SatI | GCNGC | 5 cut(s) | 295, 694, 837, 1083, 1362 |
| Sau96I | GGNCC | 2 cut(s) | 1020, 1185 |
| ScaI | AGTACT | 1 cut(s) | 1061 |
| SchI | GAGTC | 2 cut(s) | 579, 1130 |
| ScrFI | CCNGG | 1 cut(s) | 2022 |
| SduI | GDGCHC | 4 cut(s) | 1474, 1480, 1834, 1886 |
| SfaNI | GCATC | 6 cut(s) | 1138, 1296, 1540, 1618, 2053, 2078 |
| SfcI | CTRYAG | 4 cut(s) | 1032, 1266, 1849, 2052 |
| SfuI | TTCGAA | 1 cut(s) | 1411 |
| SinI | GGWCC | 1 cut(s) | 1185 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1076, 1159, 2109 |
| SmlI | CTYRAG | 1 cut(s) | 1343 |
| SmoI | CTYRAG | 1 cut(s) | 1343 |
| SphI | GCATGC | 2 cut(s) | 493, 1089 |
| SsiI | CCGC | 2 cut(s) | 1711, 2091 |
| SspI | AATATT | 1 cut(s) | 1442 |
| SspMI | CTAG | 5 cut(s) | 228, 537, 759, 842, 1554 |
| SstI | GAGCTC | 1 cut(s) | 1480 |
| StyD4I | CCNGG | 1 cut(s) | 2020 |
| TaaI | ACNGT | 5 cut(s) | 20, 1771, 1843, 2038, 2111 |
| TaiI | ACGT | 2 cut(s) | 1980, 2032 |
| TaqI | TCGA | 6 cut(s) | 59, 682, 1225, 1411, 1801, 1819 |
| TatI | WGTACW | 3 cut(s) | 1059, 1793, 2081 |
| TfiI | GAWTC | 5 cut(s) | 268, 869, 1010, 1102, 1526 |
| Tru1I | TTAA | 7 cut(s) | 519, 798, 1344, 1545, 1644, 1655, 1778 |
| Tru9I | TTAA | 7 cut(s) | 519, 798, 1344, 1545, 1644, 1655, 1778 |
| TscAI | CASTG | 3 cut(s) | 258, 1776, 1875 |
| TseFI | GTSAC | 1 cut(s) | 239 |
| TseI | GCWGC | 5 cut(s) | 294, 693, 836, 1082, 1361 |
| Tsp45I | GTSAC | 1 cut(s) | 239 |
| TspRI | CASTG | 3 cut(s) | 258, 1776, 1875 |
| Vha464I | CTTAAG | 1 cut(s) | 1343 |
| VpaK11BI | GGWCC | 1 cut(s) | 1185 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1592 |
| XapI | RAATTY | 2 cut(s) | 646, 2043 |
| XceI | RCATGY | 4 cut(s) | 493, 1089, 1800, 1882 |
| XmiI | GTMKAC | 1 cut(s) | 1134 |
| XspI | CTAG | 5 cut(s) | 228, 537, 759, 842, 1554 |
| ZrmI | AGTACT | 1 cut(s) | 1061 |
| Zsp2I | ATGCAT | 1 cut(s) | 1738 |