Rorug02G0237500

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013646
Physical Location & Seq
Reverse (-)
23741007 .. 23746264
5258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0237500.1

Sequence Viewer

Length: 3015 bp
ATGGCAGCACAAACCAACCTTAACATCACCACAGACCAGTCTGCTCTTCTTGCTCTCAAAGCCCGTATCACCAATGACCCTAAAAACATAGTCTTCACCAACTGGTCAACCACAACCCCTGTTTGTAACTGGGTTGGAGTCACTTGTGATGCACGCCATCATCGAATCGCAGAGTTGGACGTATCTTACTTTGGTCTCACAGGCACCATTCCTCCGGAGCTAGGCAACTTATCTTTTCTTGTTGATCTGGATTTCAAAAATAATAGTTTTCACGGTACCTTGCCTCAAGAATTGGCTCGCCTGCATCGGTTGAAGTTTATTAACTTAGGATACAACAAGTTTATGGGAGTGATTCCGTCATGGTTTGGGTCCTTGTCCAAACTTCAAGTATTCAGTTTGTTAGATAATCAATTTTCAGGTTCCATACCAGCGACAATCTTCAACTTATCTGCTTTGCAAAGTATTAATCTGAGTTATAACCAACTCTCAGGTAGAATATCCAGAGAAATCGGGAACCTAACAATGTTGAAGGAGATCTACCTTGATAGTAATAATTTTGAAGGTAGAATATCCAGAGAAATTGGGAACCTAACAATGTTGAAGGAGATCTATCTTAATGGTAATAATTTTGAAGGTCCTATACCATATGAGATTGGTTATCTTCCAAATTTAGAGATATTGGAGCTCGGTCAAAATAATCTAAATGGCCATATCCCATCCTCAATCTTCAATATCTCCACAATAACATTATTATATCTAGAGCTCAATCAGCTTTCAGGTAGCCTCCCAGCAGACATAGGCCTTGCGCTTCCAAACCTAGAAGAGTTTTATGCAAATACGAATCGCCTCAGTGGAGTAATCCCCAAATCCATCTCCAATGCTTCTGAGCTCTGGAATCTAGAGCTGCGAGATAACTCTTTTTCTGGATTTATTCCAAGCACTCTGTGCCTCTTGACAAACCTTAAATGGCTCGCATTGTCCGAGAATAATTTGACCATTGATACCTCTACTCCAGAAGTTAATATTTTTTCTTGTCTGCCAAATCTAAGGAATTTGAGGTATTTGGTCTTCTCAAGCAATCCATTAAATGCGAAGCTTTCGATTTCCTTCAGTAATTTCTCTGCATCACTTCCAAATCTTTATTTACGAAATTGCAGCTTGAGAGGTAACATCCCCAGTGATATTGGGAATTTGAGTAGCTTGATACTTTTAGACCTGGGAGACAATCAATTGAGCGGACCAATTCCAAGCTCAATGGGAAGAATGCATAATCTTCAAGGTTTGTATATGGATGATAACACATTGCAAGGATACATTCCAGATGAGCTTTGTCAACTAGAAAACTTATTTGTTTTGTACTTGGGTGGGAATCAACTCTCTGGTTCTATACCTTCCTGCTTGGGTAATCTAACAGCATCTCTAAGACTTCTATACTTAGATTCCAATTTGTTGAATTCCACAATCCCATCTTCCTTGTGGAGACTTACAGATATCTTGGTACTAGACTTGTCATCCAATTCTCTAATTGGACCTCTATCAGATGCTGTTGATAATTTTAAAGTTGCTGTATACATAAATGTATCATACAACCAACTATCTGGGAGTATACCAAGTAGCCTTGGGAGTTTAGTGAATTTGGTCAATCTCTCCTTAGCACATAACAATCTAGAAGGCTCTATTCCTAGTTCCTTTGCTACCTGCTTAAGCTTAGAACTGTTGGATTTATCTCGAAATAGTCTCTCTGGAGTGATTCCAAAGTCTCTAGAAGCACTCTCATATCTCAAGCATCTGAATTTGTCTTTCAACAGACTCCAAGGAGAAATTCCAAGCGGCGGTCCTTTCAAAAACTTCTCTGCTGAATCATTTGTTTCAAACCATGGACTCTGTGGTGGATCCCAATTTCAAGTTCCACCATGCAAAAGAAAAACTAGTATATCTATCTTGAAATCTATTATTCCGGGGATCTTGTCAGCAATGCTTCTTGCAACCTCCATAATTTGGATGTTGATGTTACGCAGAAAAAAGAATGCAACAGCTGCAGCACATATTATCTTGATGCCTCAAGTTTTACGCAGAAGGGTTTCATACCAAGAGCTCCTATGGGCAACAGATGGATTCAATGAAAGCAACTTACTTGGTATTGGGGGTTTTGGCTCAGTATATAAAGGAACATTTCCAGATGAGACAGATGTTGCAATAAAGGTTTTCAATTTGGATTTAGAAGGGGCATTTGTAAGTTTTGAGGTTGAATGTGAAATGCTACGTAATGTTCGTCACAGAAATCTTGTCAAAGTCATCAGTTGTTGTAGTCAAATTGATTTCAAAGGTCTTGTATTGAATTACATGCCTAATGGGAGCCTTGAGAAGTGGTTGCATTCTCAGAATTCTTCTTTGGACTTGGTGCAGAGGTTGGATATAATGATAGATGTTGCATCGGCATTGGAGTACCTTCACCATGGTTATGAAGTACCTATTGTCCATTGCGATTTGAAGCCGAGCAACATCTTACTAGATGATGATATGGTTGCACATGTTGCTGATTTTGGTATTGCGAGACTCTTGGGTGGAGGAGATTCTATGACTCAAACCATGACCCTGGCCACAATTGGGTATATTGCTCCAGAGTATGGAATGGAAGGAATAGTGACCAGAAGAGGGGATGTGTATAGTTTCGGTATTGTAGTGATGGAAACATTTACAAGAAGGAAACCAACTGATGTGATCTTCATTGGGGAAATGAGATTAAGTCAATGGGTTGCAAATCACCTAGTTGCAAATGCGATAGCTGATGTTGTGGATGCTACTTTACTTGGAACCGAGGAGGATCATGAGTTCGTGAGCAAGAGGGAGTGCTTATCATCTATTATGAGATTAGCTGTTGCTTGTTCAGCAGAATCACCGGAAGAGAGGATAAACATGCAAGAGGCTGTAGCCATGCTTAAAACAATCAAGATCAAGTTTTCAAAGCACGCTGCAGCAGGAGGTGAGGTGTTGAACTGTCGTCCTGTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

1004

Amino Acids

110.51

Weight (kDa)

5.54

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 11 - 50 4.1e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 97 - 206 2e-08 Leucine-rich repeat region
LRR_8 PF13855 108 - 162 7e-07 Leucine rich repeat
LRR_14 PF23598 192 - 354 2.2e-06 Leucine-rich repeat region
LRR_14 PF23598 381 - 504 4.5e-07 Leucine-rich repeat region
LRR_8 PF13855 401 - 459 1.5e-06 Leucine rich repeat
LRR_8 PF13855 545 - 604 3.7e-09 Leucine rich repeat
Pkinase PF00069 707 - 978 1.4e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 710 - 979 9.9e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
Acc36I ACCTGC 1 cut(s) 1706
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 2 cut(s) 203, 275
AccB7I CCANNNNNTGG 2 cut(s) 1998, 2627
AccBSI CCGCTC 1 cut(s) 1236
AccI GTMKAC 2 cut(s) 1569, 1606
AccIII TCCGGA 1 cut(s) 214
AciI CCGC 3 cut(s) 1236, 1830, 1833
AclWI GGATC 4 cut(s) 1887, 1900, 1970, 2832
AcoI YGGCCR 2 cut(s) 706, 2598
AcsI RAATTY 8 cut(s) 667, 1051, 1189, 1453, 1633, 1792, 1821, 2383
AcuI CTGAAG 1 cut(s) 1093
AdeI CACNNNGTG 1 cut(s) 945
AfaI GTAC 5 cut(s) 277, 1358, 1500, 2447, 2469
AfiI CCNNNNNNNGG 6 cut(s) 221, 1832, 1998, 2607, 2627, 2655
AflII CTTAAG 1 cut(s) 1702
AflIII ACRYGT 1 cut(s) 2530
AhlI ACTAGT 1 cut(s) 1928
AjnI CCWGG 2 cut(s) 1215, 2595
AjuI GAANNNNNNNTTGG 6 cut(s) 1806, 1838, 1890, 1922, 2375, 2407
AloI GAACNNNNNNTCC 2 cut(s) 2816, 2848
Alw21I GWGCWC 4 cut(s) 687, 765, 891, 2097
Alw26I GTCTC 7 cut(s) 200, 1215, 1474, 1742, 1764, 2177, 2548
AlwI GGATC 4 cut(s) 1887, 1900, 1970, 2832
AlwNI CAGNNNCTG 1 cut(s) 1544
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 3 cut(s) 706, 799, 2598
ApeKI GCWGC 7 cut(s) 5, 904, 1155, 2036, 2039, 2972, 2975
ApoI RAATTY 8 cut(s) 667, 1051, 1189, 1453, 1633, 1792, 1821, 2383
AseI ATTAAT 1 cut(s) 465
Asp700I GAANNNNTTC 1 cut(s) 2080
Asp718I GGTACC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 808
AspS9I GGNCC 5 cut(s) 369, 635, 1238, 1529, 1835
AsuC2I CCSGG 1 cut(s) 1959
AsuHPI GGTGA 7 cut(s) 19, 61, 88, 2444, 2756, 2889, 2996
AvaII GGWCC 5 cut(s) 369, 635, 1238, 1529, 1835
BalI TGGCCA 2 cut(s) 708, 2600
BamHI GGATCC 1 cut(s) 1892
BanI GGYRCC 2 cut(s) 203, 275
BanII GRGCYC 4 cut(s) 687, 765, 891, 2097
BarI GAAGNNNNNNTAC 6 cut(s) 521, 553, 624, 656, 1052, 1084
BbsI GAAGAC 2 cut(s) 85, 1060
Bbv12I GWGCWC 4 cut(s) 687, 765, 891, 2097
BbvI GCAGC 7 cut(s) 17, 891, 1167, 2023, 2051, 2959, 2987
BccI CCATC 6 cut(s) 165, 724, 878, 1474, 2105, 2680
BciT130I CCWGG 2 cut(s) 1217, 2597
BciVI GTATCC 2 cut(s) 323, 1304
BcnI CCSGG 1 cut(s) 1959
BcoDI GTCTC 7 cut(s) 200, 1215, 1474, 1742, 1764, 2177, 2548
BcuI ACTAGT 1 cut(s) 1928
BfmI CTRYAG 3 cut(s) 2037, 2928, 2973
BfrI CTTAAG 1 cut(s) 1702
BfuAI ACCTGC 1 cut(s) 1706
BfuI GTATCC 2 cut(s) 323, 1304
BglII AGATCT 2 cut(s) 534, 606
BisI GCNGC 8 cut(s) 6, 905, 1156, 1831, 2037, 2040, 2973, 2976
BlsI GCNGC 8 cut(s) 7, 906, 1157, 1832, 2038, 2041, 2974, 2977
Bme1390I CCNGG 3 cut(s) 1217, 1959, 2597
Bme18I GGWCC 5 cut(s) 369, 635, 1238, 1529, 1835
BmgT120I GGNCC 5 cut(s) 369, 635, 1238, 1529, 1835
BmiI GGNNCC 9 cut(s) 205, 277, 370, 421, 515, 587, 1894, 2357, 2815
BmrFI CCNGG 3 cut(s) 1217, 1959, 2597
BmrI ACTGGG 2 cut(s) 139, 1170
BmsI GCATC 9 cut(s) 139, 313, 1133, 1424, 1531, 1795, 2046, 2441, 2788
BmuI ACTGGG 2 cut(s) 139, 1170
BpiI GAAGAC 2 cut(s) 85, 1060
BpmI CTGGAG 3 cut(s) 996, 1764, 2604
Bpu10I CCTNAGC 1 cut(s) 1651
BpuEI CTTGAG 6 cut(s) 270, 1057, 1180, 1766, 2046, 2381
BpuMI CCSGG 1 cut(s) 1959
BsaAI YACGTR 1 cut(s) 2264
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 8 cut(s) 1216, 1618, 1813, 1876, 1958, 2455, 2595, 2817
BsaWI WCCGGW 2 cut(s) 214, 2899
BsaXI ACNNNNNCTCC 6 cut(s) 196, 226, 994, 1024, 2973, 3003
Bsc4I CCNNNNNNNGG 6 cut(s) 221, 1832, 1998, 2607, 2627, 2655
Bse1I ACTGG 4 cut(s) 37, 107, 134, 1176
Bse3DI GCAATG 3 cut(s) 1301, 1980, 2479
BseAI TCCGGA 1 cut(s) 214
BseBI CCWGG 2 cut(s) 1217, 2597
BseDI CCNNGG 8 cut(s) 1216, 1618, 1813, 1876, 1958, 2455, 2595, 2817
BseGI GGATG 7 cut(s) 716, 1170, 1297, 1511, 2007, 2665, 2803
BseLI CCNNNNNNNGG 6 cut(s) 221, 1832, 1998, 2607, 2627, 2655
BseMI GCAATG 3 cut(s) 1301, 1980, 2479
BseMII CTCAG 6 cut(s) 461, 501, 862, 876, 2169, 2393
BseNI ACTGG 4 cut(s) 37, 107, 134, 1176
BseRI GAGGAG 2 cut(s) 2583, 2834
BseXI GCAGC 7 cut(s) 17, 891, 1167, 2023, 2051, 2959, 2987
BseYI CCCAGC 1 cut(s) 787
BsgI GTGCAG 1 cut(s) 2423
BshFI GGCC 3 cut(s) 708, 801, 2600
BshNI GGYRCC 2 cut(s) 203, 275
BsiHKAI GWGCWC 4 cut(s) 687, 765, 891, 2097
BsiSI CCGG 3 cut(s) 215, 1958, 2900
BslI CCNNNNNNNGG 6 cut(s) 221, 1832, 1998, 2607, 2627, 2655
BsmAI GTCTC 7 cut(s) 200, 1215, 1474, 1742, 1764, 2177, 2548
BsmI GAATGC 3 cut(s) 1269, 2032, 2374
BsnI GGCC 3 cut(s) 708, 801, 2600
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 4 cut(s) 687, 765, 891, 2097
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 8 cut(s) 244, 534, 606, 1892, 1962, 2721, 2824, 2952
Bsp19I CCATGG 2 cut(s) 1876, 2455
BspACI CCGC 3 cut(s) 1236, 1830, 1833
BspANI GGCC 3 cut(s) 708, 801, 2600
BspCNI CTCAG 6 cut(s) 462, 500, 861, 877, 2168, 2392
BspEI TCCGGA 1 cut(s) 214
BspHI TCATGA 1 cut(s) 2827
BspLI GGNNCC 9 cut(s) 205, 277, 370, 421, 515, 587, 1894, 2357, 2815
BspMAI CTGCAG 2 cut(s) 2041, 2977
BspMI ACCTGC 1 cut(s) 1706
BspPI GGATC 4 cut(s) 1887, 1900, 1970, 2832
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 203, 275
BspTI CTTAAG 1 cut(s) 1702
BspTNI GGTCTC 1 cut(s) 200
BsrBI CCGCTC 1 cut(s) 1236
BsrDI GCAATG 3 cut(s) 1301, 1980, 2479
BsrI ACTGG 4 cut(s) 37, 107, 134, 1176
BssECI CCNNGG 8 cut(s) 1216, 1618, 1813, 1876, 1958, 2455, 2595, 2817
BssMI GATC 8 cut(s) 244, 534, 606, 1892, 1962, 2721, 2824, 2952
BssNAI GTATAC 2 cut(s) 1570, 1607
BssT1I CCWWGG 4 cut(s) 1618, 1813, 1876, 2455
Bst1107I GTATAC 2 cut(s) 1570, 1607
Bst2UI CCWGG 2 cut(s) 1217, 2597
Bst4CI ACNGT 3 cut(s) 275, 1716, 2999
Bst6I CTCTTC 4 cut(s) 51, 816, 2647, 2898
BstAFI CTTAAG 1 cut(s) 1702
BstAPI GCANNNNNTGC 3 cut(s) 945, 2036, 2534
BstBAI YACGTR 1 cut(s) 2264
BstC8I GCNNGC 5 cut(s) 154, 298, 302, 972, 2970
BstDSI CCRYGG 2 cut(s) 1876, 2455
BstF5I GGATG 7 cut(s) 716, 1170, 1297, 1511, 2007, 2665, 2803
BstHHI GCGC 1 cut(s) 808
BstKTI GATC 8 cut(s) 247, 537, 609, 1895, 1965, 2724, 2827, 2955
BstMAI GTCTC 7 cut(s) 200, 1215, 1474, 1742, 1764, 2177, 2548
BstMBI GATC 8 cut(s) 244, 534, 606, 1892, 1962, 2721, 2824, 2952
BstMWI GCNNNNNNNGC 7 cut(s) 50, 59, 769, 945, 2036, 2534, 2888
BstNI CCWGG 2 cut(s) 1217, 2597
BstNSI RCATGY 3 cut(s) 2347, 2534, 2920
BstSCI CCNGG 3 cut(s) 1215, 1957, 2595
BstSFI CTRYAG 3 cut(s) 2037, 2928, 2973
BstSNI TACGTA 1 cut(s) 2264
BstV1I GCAGC 7 cut(s) 17, 891, 1167, 2023, 2051, 2959, 2987
BstV2I GAAGAC 2 cut(s) 85, 1060
BstX2I RGATCY 4 cut(s) 534, 606, 1892, 1962
BstXI CCANNNNNNTGG 2 cut(s) 1598, 2596
BstYI RGATCY 4 cut(s) 534, 606, 1892, 1962
BstZ17I GTATAC 2 cut(s) 1570, 1607
BsuI GTATCC 2 cut(s) 323, 1304
BsuRI GGCC 3 cut(s) 708, 801, 2600
BtgI CCRYGG 2 cut(s) 1876, 2455
BtsCI GGATG 7 cut(s) 716, 1170, 1297, 1511, 2007, 2665, 2803
BtsIMutI CAGTG 2 cut(s) 856, 1183
BveI ACCTGC 1 cut(s) 1706
Cac8I GCNNGC 5 cut(s) 154, 298, 302, 972, 2970
CaiI CAGNNNCTG 1 cut(s) 1544
CciI TCATGA 1 cut(s) 2827
CfoI GCGC 1 cut(s) 808
Cfr13I GGNCC 5 cut(s) 369, 635, 1238, 1529, 1835
Csp6I GTAC 5 cut(s) 276, 1357, 1499, 2446, 2468
CviQI GTAC 5 cut(s) 276, 1357, 1499, 2446, 2468
DpnI GATC 8 cut(s) 246, 536, 608, 1894, 1964, 2723, 2826, 2954
DpnII GATC 8 cut(s) 244, 534, 606, 1892, 1962, 2721, 2824, 2952
DraI TTTAAA 1 cut(s) 1558
DraIII CACNNNGTG 1 cut(s) 945
EaeI YGGCCR 2 cut(s) 706, 2598
Eam1104I CTCTTC 4 cut(s) 51, 816, 2647, 2898
EarI CTCTTC 4 cut(s) 51, 816, 2647, 2898
Ecl136II GAGCTC 4 cut(s) 685, 763, 889, 2095
Eco105I TACGTA 1 cut(s) 2264
Eco130I CCWWGG 4 cut(s) 1618, 1813, 1876, 2455
Eco147I AGGCCT 1 cut(s) 801
Eco24I GRGCYC 4 cut(s) 687, 765, 891, 2097
Eco31I GGTCTC 1 cut(s) 200
Eco32I GATATC 1 cut(s) 1492
Eco47I GGWCC 5 cut(s) 369, 635, 1238, 1529, 1835
Eco53kI GAGCTC 4 cut(s) 685, 763, 889, 2095
Eco57I CTGAAG 1 cut(s) 1093
EcoICRI GAGCTC 4 cut(s) 685, 763, 889, 2095
EcoO109I RGGNCCY 2 cut(s) 369, 635
EcoRI GAATTC 2 cut(s) 1453, 2383
EcoRII CCWGG 2 cut(s) 1215, 2595
EcoRV GATATC 1 cut(s) 1492
EcoT14I CCWWGG 4 cut(s) 1618, 1813, 1876, 2455
EcoT22I ATGCAT 1 cut(s) 1269
EcoT38I GRGCYC 4 cut(s) 687, 765, 891, 2097
ErhI CCWWGG 4 cut(s) 1618, 1813, 1876, 2455
FauNDI CATATG 1 cut(s) 646
FblI GTMKAC 2 cut(s) 1569, 1606
Fnu4HI GCNGC 8 cut(s) 6, 905, 1156, 1831, 2037, 2040, 2973, 2976
FokI GGATG 7 cut(s) 703, 1157, 1304, 1498, 2014, 2672, 2810
FriOI GRGCYC 4 cut(s) 687, 765, 891, 2097
Fsp4HI GCNGC 8 cut(s) 6, 905, 1156, 1831, 2037, 2040, 2973, 2976
GlaI GCGC 1 cut(s) 807
GluI GCNGC 8 cut(s) 6, 905, 1156, 1831, 2037, 2040, 2973, 2976
GsaI CCCAGC 1 cut(s) 791
GsuI CTGGAG 3 cut(s) 996, 1764, 2604
HaeIII GGCC 3 cut(s) 708, 801, 2600
HapII CCGG 3 cut(s) 215, 1958, 2900
HhaI GCGC 1 cut(s) 808
Hin6I GCGC 1 cut(s) 806
HinP1I GCGC 1 cut(s) 806
HincII GTYRAC 2 cut(s) 108, 1334
HindII GTYRAC 2 cut(s) 108, 1334
HindIII AAGCTT 2 cut(s) 1094, 1705
HpaII CCGG 3 cut(s) 215, 1958, 2900
HphI GGTGA 7 cut(s) 19, 61, 88, 2444, 2756, 2889, 2996
Hpy166II GTNNAC 4 cut(s) 108, 1334, 1570, 1607
Hpy188I TCNGA 6 cut(s) 471, 886, 982, 1540, 1791, 2382
Hpy8I GTNNAC 4 cut(s) 108, 1334, 1570, 1607
HpyCH4III ACNGT 3 cut(s) 275, 1716, 2999
HpyCH4IV ACGT 2 cut(s) 180, 2263
HpyF10VI GCNNNNNNNGC 7 cut(s) 50, 59, 769, 945, 2036, 2534, 2888
HpySE526I ACGT 2 cut(s) 180, 2263
HspAI GCGC 1 cut(s) 806
Kpn2I TCCGGA 1 cut(s) 214
KpnI GGTACC 1 cut(s) 279
Kzo9I GATC 8 cut(s) 244, 534, 606, 1892, 1962, 2721, 2824, 2952
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 5 cut(s) 217, 682, 2100, 2355, 2623
Lsp1109I GCAGC 7 cut(s) 17, 891, 1167, 2023, 2051, 2959, 2987
LweI GCATC 9 cut(s) 139, 313, 1133, 1424, 1531, 1795, 2046, 2441, 2788
MaeII ACGT 2 cut(s) 180, 2263
MaeIII GTNAC 6 cut(s) 125, 139, 1166, 2010, 2273, 2644
MalI GATC 8 cut(s) 246, 536, 608, 1894, 1964, 2723, 2826, 2954
MbiI CCGCTC 1 cut(s) 1236
MboI GATC 8 cut(s) 244, 534, 606, 1892, 1962, 2721, 2824, 2952
MfeI CAATTG 2 cut(s) 1229, 2604
MflI RGATCY 4 cut(s) 534, 606, 1892, 1962
MhlI GDGCHC 4 cut(s) 687, 765, 891, 2097
MlsI TGGCCA 2 cut(s) 708, 2600
MluNI TGGCCA 2 cut(s) 708, 2600
MlyI GAGTC 5 cut(s) 147, 1803, 1875, 2550, 2575
MmeI TCCRAC 4 cut(s) 115, 156, 1698, 2391
Mox20I TGGCCA 2 cut(s) 708, 2600
Mph1103I ATGCAT 1 cut(s) 1269
MroI TCCGGA 1 cut(s) 214
MroXI GAANNNNTTC 1 cut(s) 2080
MscI TGGCCA 2 cut(s) 708, 2600
MslI CAYNNNNRTG 1 cut(s) 2460
Msp20I TGGCCA 2 cut(s) 708, 2600
MspA1I CMGCKG 1 cut(s) 2036
MspCI CTTAAG 1 cut(s) 1702
MspI CCGG 3 cut(s) 215, 1958, 2900
MspR9I CCNGG 3 cut(s) 1217, 1959, 2597
MunI CAATTG 2 cut(s) 1229, 2604
Mva1269I GAATGC 3 cut(s) 1269, 2032, 2374
MvaI CCWGG 2 cut(s) 1217, 2597
MwoI GCNNNNNNNGC 7 cut(s) 50, 59, 769, 945, 2036, 2534, 2888
NciI CCSGG 1 cut(s) 1959
NcoI CCATGG 2 cut(s) 1876, 2455
NdeI CATATG 1 cut(s) 646
NdeII GATC 8 cut(s) 244, 534, 606, 1892, 1962, 2721, 2824, 2952
NlaIV GGNNCC 9 cut(s) 205, 277, 370, 421, 515, 587, 1894, 2357, 2815
NmeAIII GCCGAG 1 cut(s) 2520
NmuCI GTSAC 3 cut(s) 139, 2273, 2644
NsiI ATGCAT 1 cut(s) 1269
NspI RCATGY 3 cut(s) 2347, 2534, 2920
PagI TCATGA 1 cut(s) 2827
PceI AGGCCT 1 cut(s) 801
PciI ACATGT 1 cut(s) 2530
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 3 cut(s) 160, 978, 2269
PctI GAATGC 3 cut(s) 1269, 2032, 2374
PdmI GAANNNNTTC 1 cut(s) 2080
PflMI CCANNNNNTGG 2 cut(s) 1998, 2627
PkrI GCNGC 8 cut(s) 7, 906, 1157, 1832, 2038, 2041, 2974, 2977
PleI GAGTC 5 cut(s) 146, 1803, 1875, 2550, 2575
PpsI GAGTC 5 cut(s) 146, 1803, 1875, 2550, 2575
Ppu21I YACGTR 1 cut(s) 2264
PpuMI RGGWCCY 2 cut(s) 369, 635
PscI ACATGT 1 cut(s) 2530
PshBI ATTAAT 1 cut(s) 465
PsiI TTATAA 1 cut(s) 477
Psp124BI GAGCTC 4 cut(s) 687, 765, 891, 2097
Psp5II RGGWCCY 2 cut(s) 369, 635
Psp6I CCWGG 2 cut(s) 1215, 2595
PspFI CCCAGC 1 cut(s) 787
PspGI CCWGG 2 cut(s) 1215, 2595
PspN4I GGNNCC 9 cut(s) 205, 277, 370, 421, 515, 587, 1894, 2357, 2815
PspPI GGNCC 5 cut(s) 369, 635, 1238, 1529, 1835
PspPPI RGGWCCY 2 cut(s) 369, 635
PstI CTGCAG 2 cut(s) 2041, 2977
PstNI CAGNNNCTG 1 cut(s) 1544
PsuI RGATCY 4 cut(s) 534, 606, 1892, 1962
PvuII CAGCTG 1 cut(s) 2036
RsaI GTAC 5 cut(s) 277, 1358, 1500, 2447, 2469
RsaNI GTAC 5 cut(s) 276, 1357, 1499, 2446, 2468
RseI CAYNNNNRTG 1 cut(s) 2460
SacI GAGCTC 4 cut(s) 687, 765, 891, 2097
SapI GCTCTTC 1 cut(s) 51
SatI GCNGC 8 cut(s) 6, 905, 1156, 1831, 2037, 2040, 2973, 2976
Sau3AI GATC 8 cut(s) 244, 534, 606, 1892, 1962, 2721, 2824, 2952
Sau96I GGNCC 5 cut(s) 369, 635, 1238, 1529, 1835
SchI GAGTC 5 cut(s) 147, 1803, 1875, 2550, 2575
ScrFI CCNGG 3 cut(s) 1217, 1959, 2597
SduI GDGCHC 4 cut(s) 687, 765, 891, 2097
SfaNI GCATC 9 cut(s) 139, 313, 1133, 1424, 1531, 1795, 2046, 2441, 2788
SfcI CTRYAG 3 cut(s) 2037, 2928, 2973
SinI GGWCC 5 cut(s) 369, 635, 1238, 1529, 1835
SmiMI CAYNNNNRTG 1 cut(s) 2460
SmlI CTYRAG 7 cut(s) 285, 1072, 1159, 1702, 1781, 2061, 2360
SmoI CTYRAG 7 cut(s) 285, 1072, 1159, 1702, 1781, 2061, 2360
SnaBI TACGTA 1 cut(s) 2264
SpeI ACTAGT 1 cut(s) 1928
SseBI AGGCCT 1 cut(s) 801
SsiI CCGC 3 cut(s) 1236, 1830, 1833
SspI AATATT 1 cut(s) 1024
SstI GAGCTC 4 cut(s) 687, 765, 891, 2097
StuI AGGCCT 1 cut(s) 801
StyD4I CCNGG 3 cut(s) 1215, 1957, 2595
StyI CCWWGG 4 cut(s) 1618, 1813, 1876, 2455
TaaI ACNGT 3 cut(s) 275, 1716, 2999
TaiI ACGT 2 cut(s) 183, 2266
TaqI TCGA 3 cut(s) 163, 1100, 1729
TaqII GACCGA 1 cut(s) 677
TatI WGTACW 1 cut(s) 1356
TauI GCSGC 1 cut(s) 1833
TscAI CASTG 2 cut(s) 856, 1183
TseFI GTSAC 3 cut(s) 139, 2273, 2644
TseI GCWGC 7 cut(s) 5, 904, 1155, 2036, 2039, 2972, 2975
Tsp45I GTSAC 3 cut(s) 139, 2273, 2644
TspDTI ATGAA 4 cut(s) 2073, 2136, 2478, 2716
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 2 cut(s) 856, 1183
Van91I CCANNNNNTGG 2 cut(s) 1998, 2627
Vha464I CTTAAG 1 cut(s) 1702
VpaK11BI GGWCC 5 cut(s) 369, 635, 1238, 1529, 1835
VspI ATTAAT 1 cut(s) 465
XapI RAATTY 8 cut(s) 667, 1051, 1189, 1453, 1633, 1792, 1821, 2383
XbaI TCTAGA 4 cut(s) 757, 898, 1666, 1762
XceI RCATGY 3 cut(s) 2347, 2534, 2920
XcmI CCANNNNNNNNNTGG 2 cut(s) 1473, 1883
XmiI GTMKAC 2 cut(s) 1569, 1606
XmnI GAANNNNTTC 1 cut(s) 2080
Zsp2I ATGCAT 1 cut(s) 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.