Rorug04G0234800

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000255
Physical Location & Seq
Reverse (-)
40048280 .. 40054070
5791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0234800.1

Sequence Viewer

Length: 693 bp
ATGGAAGGCGGAGACGGGACGATGCGGCTCGGGGCTCTCAACATGAAGGCGGATCGGGTGAGGTTCGATTCGAGTCCCGATGTGTCGGTTTCGTCGGCGGTGACCAAGCAGAAGGCGGCGGCGGCCAAGCAGTTCATTGAGAATCACTACAAGAACTATCTACAAGGACTACAGGATCGGCAAGAGAGACGTCGAGCACTTCAAAGGAAAGTGCAAGAAGATCAGGTACCGGCTGAGGAACAAGAAGAGATGATGAGGAATTTGGCACGCCGAGAAACAGAATATATGAGACTCCAAAGACGTAAAATCGGAATTGATGATTTTGAGCAATTAACTGTAATTGGAAAAGGTGCCTTTGGCGAGGTAAGGTTATGCCGTGCAAAAGGTACAGGAGAGATTTTCGCTATGAAGAAATTGAAGAAATCAGAGATGCTTAGCCGTGGACAGGTTGAACATGTGCGTTCTGAGAGAAATTTGCTTGCTGAGGTTGATAGTCGGTGTATTGTGAAACTTTATTATTCATTTCAAGATTCCGATTTCTTATACCTTATCATGGAGTATTTACCTGGTGGTGACATTATGACATTATTGATGAGAGAAGATACTCTTTCTGAAGATGTTGCACGTTTTTATATGGATGAGGGAATGAATGTAGGACCCTTATACTATGAATCTCTAAGGCTTGACTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

230

Amino Acids

26.64

Weight (kDa)

6.24

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 108 - 214 6.9e-24 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 111 - 201 7.8e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 193
Acc65I GGTACC 1 cut(s) 226
AccB1I GGYRCC 2 cut(s) 226, 350
AciI CCGC 7 cut(s) 9, 25, 50, 98, 116, 119, 122
AclWI GGATC 2 cut(s) 60, 183
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 2 cut(s) 259, 472
AcuI CTGAAG 1 cut(s) 633
AcyI GRCGYC 1 cut(s) 190
AfaI GTAC 2 cut(s) 228, 388
AfiI CCNNNNNNNGG 2 cut(s) 445, 553
AflIII ACRYGT 1 cut(s) 454
AgsI TTSAA 4 cut(s) 203, 418, 452, 527
AjnI CCWGG 1 cut(s) 565
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 3 cut(s) 6, 181, 283
AlwI GGATC 2 cut(s) 60, 183
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 1 cut(s) 123
ApoI RAATTY 2 cut(s) 259, 472
Asp718I GGTACC 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 656
AsuHPI GGTGA 3 cut(s) 70, 112, 584
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 1 cut(s) 656
BanI GGYRCC 2 cut(s) 226, 350
BanII GRGCYC 1 cut(s) 37
BarI GAAGNNNNNNTAC 2 cut(s) 210, 242
Bbv12I GWGCWC 1 cut(s) 199
BbvCI CCTCAGC 2 cut(s) 234, 483
BceAI ACGGC 2 cut(s) 360, 423
BciT130I CCWGG 1 cut(s) 567
BcoDI GTCTC 3 cut(s) 6, 181, 283
BfaI CTAG 1 cut(s) 691
BfmI CTRYAG 1 cut(s) 170
BisI GCNGC 4 cut(s) 26, 117, 120, 123
BlpI GCTNAGC 1 cut(s) 434
BlsI GCNGC 4 cut(s) 27, 118, 121, 124
Bme1390I CCNGG 1 cut(s) 567
Bme18I GGWCC 1 cut(s) 656
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 3 cut(s) 228, 352, 658
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 2 cut(s) 12, 420
Bpu10I CCTNAGC 2 cut(s) 234, 483
Bpu1102I GCTNAGC 1 cut(s) 434
BsaHI GRCGYC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 439
Bsc4I CCNNNNNNNGG 2 cut(s) 445, 553
Bse118I RCCGGY 1 cut(s) 229
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 1 cut(s) 643
BseLI CCNNNNNNNGG 2 cut(s) 445, 553
BseMII CTCAG 3 cut(s) 225, 456, 474
BshFI GGCC 1 cut(s) 125
BshNI GGYRCC 2 cut(s) 226, 350
BsiHKAI GWGCWC 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 2 cut(s) 31, 60
BslI CCNNNNNNNGG 2 cut(s) 445, 553
BsmAI GTCTC 3 cut(s) 6, 181, 283
BsmBI CGTCTC 2 cut(s) 6, 181
BsmFI GGGAC 2 cut(s) 31, 60
BsnI GGCC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 37, 199
Bsp143I GATC 3 cut(s) 52, 175, 220
Bsp1720I GCTNAGC 1 cut(s) 434
BspACI CCGC 7 cut(s) 9, 25, 50, 98, 116, 119, 122
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 3 cut(s) 226, 457, 475
BspLI GGNNCC 3 cut(s) 228, 352, 658
BspPI GGATC 2 cut(s) 60, 183
BspT107I GGYRCC 2 cut(s) 226, 350
BsrFI RCCGGY 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 3 cut(s) 52, 175, 220
BssNI GRCGYC 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 1 cut(s) 240
BstACI GRCGYC 1 cut(s) 190
BstC8I GCNNGC 2 cut(s) 268, 480
BstDEI CTNAG 5 cut(s) 234, 434, 465, 483, 677
BstDSI CCRYGG 1 cut(s) 439
BstEII GGTNACC 1 cut(s) 100
BstF5I GGATG 1 cut(s) 643
BstKTI GATC 3 cut(s) 55, 178, 223
BstMAI GTCTC 3 cut(s) 6, 181, 283
BstMBI GATC 3 cut(s) 52, 175, 220
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 567
BstNSI RCATGY 1 cut(s) 458
BstPI GGTNACC 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 565
BstSFI CTRYAG 1 cut(s) 170
BsuRI GGCC 1 cut(s) 125
BtgI CCRYGG 1 cut(s) 439
BtsCI GGATG 1 cut(s) 643
Cac8I GCNNGC 2 cut(s) 268, 480
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 656
CsiI ACCWGGT 1 cut(s) 565
Csp6I GTAC 2 cut(s) 227, 387
CviAII CATG 3 cut(s) 43, 455, 553
CviJI RGCY 6 cut(s) 28, 35, 125, 233, 438, 682
CviKI_1 RGCY 6 cut(s) 28, 35, 125, 233, 438, 682
CviQI GTAC 2 cut(s) 227, 387
DdeI CTNAG 5 cut(s) 234, 434, 465, 483, 677
DpnI GATC 3 cut(s) 54, 177, 222
DpnII GATC 3 cut(s) 52, 175, 220
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
EciI GGCGGA 2 cut(s) 24, 65
Eco24I GRGCYC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 656
Eco57I CTGAAG 1 cut(s) 633
Eco88I CYCGRG 1 cut(s) 29
Eco91I GGTNACC 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 656
EcoO65I GGTNACC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 565
EcoT38I GRGCYC 1 cut(s) 37
Esp3I CGTCTC 2 cut(s) 6, 181
FaeI CATG 3 cut(s) 46, 458, 556
FalI AAGNNNNNCTT 2 cut(s) 591, 623
FaqI GGGAC 2 cut(s) 31, 60
FatI CATG 3 cut(s) 42, 454, 552
Fnu4HI GCNGC 4 cut(s) 26, 117, 120, 123
FokI GGATG 1 cut(s) 650
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 4 cut(s) 26, 117, 120, 123
FspBI CTAG 1 cut(s) 691
GluI GCNGC 4 cut(s) 26, 117, 120, 123
HaeIII GGCC 1 cut(s) 125
HapII CCGG 1 cut(s) 230
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 3 cut(s) 46, 458, 556
HinfI GANTC 6 cut(s) 68, 73, 142, 291, 530, 671
HpaII CCGG 1 cut(s) 230
HphI GGTGA 3 cut(s) 70, 112, 584
Hpy166II GTNNAC 1 cut(s) 443
Hpy188I TCNGA 5 cut(s) 311, 427, 466, 535, 613
Hpy188III TCNNGA 2 cut(s) 77, 527
Hpy8I GTNNAC 1 cut(s) 443
Hpy99I CGWCG 2 cut(s) 97, 195
HpyAV CCTTC 2 cut(s) 40, 106
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 3 cut(s) 190, 301, 625
HpyCH4V TGCA 3 cut(s) 214, 380, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 5 cut(s) 234, 434, 465, 483, 677
HpySE526I ACGT 3 cut(s) 190, 301, 625
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 3 cut(s) 46, 458, 556
KpnI GGTACC 1 cut(s) 230
Kzo9I GATC 3 cut(s) 52, 175, 220
LpnPI CCDG 7 cut(s) 158, 209, 243, 375, 431, 552, 579
LweI GCATC 2 cut(s) 12, 420
MabI ACCWGGT 1 cut(s) 565
MaeI CTAG 1 cut(s) 691
MaeII ACGT 3 cut(s) 190, 301, 625
MaeIII GTNAC 2 cut(s) 100, 572
MalI GATC 3 cut(s) 54, 177, 222
MboI GATC 3 cut(s) 52, 175, 220
MboII GAAGA 6 cut(s) 230, 257, 421, 430, 611, 626
MhlI GDGCHC 2 cut(s) 37, 199
MluCI AATT 6 cut(s) 259, 312, 329, 339, 413, 472
MlyI GAGTC 2 cut(s) 82, 285
MnlI CCTC 6 cut(s) 54, 229, 249, 355, 478, 634
MseI TTAA 1 cut(s) 332
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 567
MvaI CCWGG 1 cut(s) 567
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 3 cut(s) 52, 175, 220
NlaIII CATG 3 cut(s) 46, 458, 556
NlaIV GGNNCC 3 cut(s) 228, 352, 658
NmeAIII GCCGAG 1 cut(s) 296
NmuCI GTSAC 2 cut(s) 100, 572
NspI RCATGY 1 cut(s) 458
PciI ACATGT 1 cut(s) 454
PfeI GAWTC 4 cut(s) 68, 142, 530, 671
PkrI GCNGC 4 cut(s) 27, 118, 121, 124
PleI GAGTC 2 cut(s) 81, 285
PpsI GAGTC 2 cut(s) 81, 285
PpuMI RGGWCCY 1 cut(s) 656
PscI ACATGT 1 cut(s) 454
Psp5II RGGWCCY 1 cut(s) 656
Psp6I CCWGG 1 cut(s) 565
PspEI GGTNACC 1 cut(s) 100
PspGI CCWGG 1 cut(s) 565
PspN4I GGNNCC 3 cut(s) 228, 352, 658
PspPI GGNCC 1 cut(s) 656
PspPPI RGGWCCY 1 cut(s) 656
RsaI GTAC 2 cut(s) 228, 388
RsaNI GTAC 2 cut(s) 227, 387
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 4 cut(s) 26, 117, 120, 123
Sau3AI GATC 3 cut(s) 52, 175, 220
Sau96I GGNCC 1 cut(s) 656
SchI GAGTC 2 cut(s) 82, 285
ScrFI CCNGG 1 cut(s) 567
SduI GDGCHC 2 cut(s) 37, 199
SexAI ACCWGGT 1 cut(s) 565
SfaNI GCATC 2 cut(s) 12, 420
SfcI CTRYAG 1 cut(s) 170
SinI GGWCC 1 cut(s) 656
Sse9I AATT 6 cut(s) 259, 312, 329, 339, 413, 472
SsiI CCGC 7 cut(s) 9, 25, 50, 98, 116, 119, 122
SspMI CTAG 1 cut(s) 691
StyD4I CCNGG 1 cut(s) 565
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 3 cut(s) 193, 304, 628
TaqI TCGA 3 cut(s) 66, 71, 193
TasI AATT 6 cut(s) 259, 312, 329, 339, 413, 472
TauI GCSGC 4 cut(s) 28, 119, 122, 125
TfiI GAWTC 4 cut(s) 68, 142, 530, 671
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TseFI GTSAC 2 cut(s) 100, 572
Tsp45I GTSAC 2 cut(s) 100, 572
TspDTI ATGAA 6 cut(s) 59, 124, 422, 510, 662, 684
VpaK11BI GGWCC 1 cut(s) 656
XapI RAATTY 2 cut(s) 259, 472
XceI RCATGY 1 cut(s) 458
XspI CTAG 1 cut(s) 691
ZraI GACGTC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.