MD15G1416800.v1.1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000255
Physical Location & Seq
Forward (+)
51849305 .. 51849817
513 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1416800.v1.1.491

Sequence Viewer

Length: 513 bp
ATGAATCTGGCGAGGGTTCTGAAAGCGGCAACAGCCAACATTGTTCCTTCTCCGTCAGCTTGTTCACCGACAAGGGTGGTTGGTGTCGGTCATCCTCCGCAATTCCACCTCACAAGAAGATTAATGGCGTCCAAGGCTGCCAACGCTGCTGCTGAGCCTCATATCATGGCTTCCTCCTCCTCCTACAGTGATCCATGCCTTGATCTCTTTTTCAACGTGCGACCACCACCACCACCACCAGCATCCGCCGGGCATAATTCCCACACTGACACTGCCCTCATCAACTCCCTCAAGCAGCAGCTCCCAGTCGCCTGGTCTCACAATCCCCTCACCTCCCTCAAGATTATCTTCAACCTCTCTACTGGAAGTCACTTCTATCTTGAAGCCTTGTCCGCGGCCACATCTTGGCTCCACCAAAACCACCCGAAGACTCTCGCGCGCAACCTCGACTCTTTCGAGGGATTGTACACCCTTGTCCAGATTCTCTACAGCCTTCTCCTTCCGGAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

171

Amino Acids

18.34

Weight (kDa)

9.06

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 60 - 152 2e-14 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 405
AccII CGCG 3 cut(s) 395, 437, 439
AccIII TCCGGA 1 cut(s) 502
AciI CCGC 5 cut(s) 26, 98, 246, 393, 395
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 1 cut(s) 467
AfiI CCNNNNNNNGG 2 cut(s) 405, 505
AgsI TTSAA 3 cut(s) 214, 352, 383
AjnI CCWGG 1 cut(s) 311
AluBI AGCT 2 cut(s) 59, 301
AluI AGCT 2 cut(s) 59, 301
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 1 cut(s) 185
Aor13HI TCCGGA 1 cut(s) 502
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 5 cut(s) 137, 146, 149, 295, 298
AseI ATTAAT 1 cut(s) 122
AspLEI GCGC 2 cut(s) 439, 441
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 2 cut(s) 57, 322
BbsI GAAGAC 1 cut(s) 434
BbvI GCAGC 5 cut(s) 124, 133, 136, 307, 310
BciT130I CCWGG 1 cut(s) 313
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 321
BfmI CTRYAG 2 cut(s) 184, 487
BisI GCNGC 7 cut(s) 27, 138, 147, 150, 296, 299, 396
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 7 cut(s) 28, 139, 148, 151, 297, 300, 397
Bme1390I CCNGG 2 cut(s) 250, 313
BmiI GGNNCC 1 cut(s) 410
BmrFI CCNGG 2 cut(s) 250, 313
BmrI ACTGGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 251
BmuI ACTGGG 1 cut(s) 299
BpiI GAAGAC 1 cut(s) 434
Bpu1102I GCTNAGC 1 cut(s) 153
BpuEI CTTGAG 2 cut(s) 275, 323
BpuMI CCSGG 1 cut(s) 250
BsaHI GRCGYC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 321
BsaJI CCNNGG 2 cut(s) 132, 393
BsaWI WCCGGW 1 cut(s) 502
Bsc4I CCNNNNNNNGG 2 cut(s) 405, 505
Bse1I ACTGG 2 cut(s) 305, 367
BseAI TCCGGA 1 cut(s) 502
BseBI CCWGG 1 cut(s) 313
BseDI CCNNGG 2 cut(s) 132, 393
BseGI GGATG 2 cut(s) 91, 242
BseLI CCNNNNNNNGG 2 cut(s) 405, 505
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 2 cut(s) 305, 367
BsePI GCGCGC 1 cut(s) 437
BseRI GAGGAG 2 cut(s) 166, 169
BseXI GCAGC 5 cut(s) 124, 133, 136, 307, 310
Bsh1236I CGCG 3 cut(s) 395, 437, 439
BshFI GGCC 1 cut(s) 398
BsiSI CCGG 2 cut(s) 249, 503
BslI CCNNNNNNNGG 2 cut(s) 405, 505
BsmAI GTCTC 1 cut(s) 321
BsnI GGCC 1 cut(s) 398
Bso31I GGTCTC 1 cut(s) 321
Bsp13I TCCGGA 1 cut(s) 502
Bsp1407I TGTACA 1 cut(s) 465
Bsp143I GATC 2 cut(s) 190, 202
Bsp1720I GCTNAGC 1 cut(s) 153
BspACI CCGC 5 cut(s) 26, 98, 246, 393, 395
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 1 cut(s) 145
BspEI TCCGGA 1 cut(s) 502
BspFNI CGCG 3 cut(s) 395, 437, 439
BspLI GGNNCC 1 cut(s) 410
BspPI GGATC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 321
BsrGI TGTACA 1 cut(s) 465
BsrI ACTGG 2 cut(s) 305, 367
BssECI CCNNGG 2 cut(s) 132, 393
BssHII GCGCGC 1 cut(s) 437
BssMI GATC 2 cut(s) 190, 202
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 128
BstAUI TGTACA 1 cut(s) 465
BstC8I GCNNGC 1 cut(s) 439
BstDEI CTNAG 1 cut(s) 153
BstDSI CCRYGG 1 cut(s) 393
BstENI CCTNNNNNAGG 1 cut(s) 503
BstF5I GGATG 2 cut(s) 91, 242
BstFNI CGCG 3 cut(s) 395, 437, 439
BstHHI GCGC 2 cut(s) 439, 441
BstKTI GATC 2 cut(s) 193, 205
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 2 cut(s) 190, 202
BstMWI GCNNNNNNNGC 5 cut(s) 32, 134, 143, 146, 392
BstNI CCWGG 1 cut(s) 313
BstSCI CCNGG 2 cut(s) 248, 311
BstSFI CTRYAG 2 cut(s) 184, 487
BstUI CGCG 3 cut(s) 395, 437, 439
BstV1I GCAGC 5 cut(s) 124, 133, 136, 307, 310
BstV2I GAAGAC 1 cut(s) 434
BstXI CCANNNNNNTGG 1 cut(s) 312
BsuRI GGCC 1 cut(s) 398
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 2 cut(s) 91, 242
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 3 cut(s) 193, 264, 270
Cac8I GCNNGC 1 cut(s) 439
CfoI GCGC 2 cut(s) 439, 441
Cfr42I CCGCGG 1 cut(s) 396
CseI GACGC 1 cut(s) 117
Csp6I GTAC 1 cut(s) 466
CviAII CATG 2 cut(s) 166, 195
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 1 cut(s) 153
DpnI GATC 2 cut(s) 192, 204
DpnII GATC 2 cut(s) 190, 202
EaeI YGGCCR 1 cut(s) 396
EciI GGCGGA 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 321
EcoNI CCTNNNNNAGG 1 cut(s) 503
EcoRII CCWGG 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 2 cut(s) 169, 198
FaiI YATR 4 cut(s) 162, 167, 196, 255
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 2 cut(s) 165, 194
Fnu4HI GCNGC 7 cut(s) 27, 138, 147, 150, 296, 299, 396
FokI GGATG 2 cut(s) 78, 229
Fsp4HI GCNGC 7 cut(s) 27, 138, 147, 150, 296, 299, 396
GlaI GCGC 2 cut(s) 438, 440
GluI GCNGC 7 cut(s) 27, 138, 147, 150, 296, 299, 396
HaeIII GGCC 1 cut(s) 398
HapII CCGG 2 cut(s) 249, 503
HgaI GACGC 1 cut(s) 117
HhaI GCGC 2 cut(s) 439, 441
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 2 cut(s) 169, 198
Hin6I GCGC 2 cut(s) 437, 439
HinP1I GCGC 2 cut(s) 437, 439
HinfI GANTC 4 cut(s) 4, 430, 449, 481
HpaII CCGG 2 cut(s) 249, 503
HphI GGTGA 2 cut(s) 57, 322
Hpy166II GTNNAC 2 cut(s) 65, 468
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 4 cut(s) 340, 380, 478, 503
Hpy8I GTNNAC 2 cut(s) 65, 468
HpyAV CCTTC 3 cut(s) 57, 503, 509
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 216
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 134, 143, 146, 392
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 2 cut(s) 169, 198
HspAI GCGC 2 cut(s) 437, 439
Kpn2I TCCGGA 1 cut(s) 502
KspI CCGCGG 1 cut(s) 396
Kzo9I GATC 2 cut(s) 190, 202
LmnI GCTCC 2 cut(s) 306, 414
LpnPI CCDG 7 cut(s) 252, 262, 298, 318, 325, 348, 491
Lsp1109I GCAGC 5 cut(s) 124, 133, 136, 307, 310
LweI GCATC 1 cut(s) 251
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 368
MalI GATC 2 cut(s) 192, 204
MboI GATC 2 cut(s) 190, 202
MboII GAAGA 3 cut(s) 129, 340, 439
MluCI AATT 2 cut(s) 101, 256
MlyI GAGTC 2 cut(s) 424, 443
MroI TCCGGA 1 cut(s) 502
MseI TTAA 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 2 cut(s) 249, 503
MspR9I CCNGG 2 cut(s) 250, 313
MvaI CCWGG 1 cut(s) 313
MvnI CGCG 3 cut(s) 395, 437, 439
MwoI GCNNNNNNNGC 5 cut(s) 32, 134, 143, 146, 392
NciI CCSGG 1 cut(s) 250
NdeII GATC 2 cut(s) 190, 202
NlaIII CATG 2 cut(s) 169, 198
NlaIV GGNNCC 1 cut(s) 410
NmuCI GTSAC 1 cut(s) 368
PauI GCGCGC 1 cut(s) 437
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PfeI GAWTC 2 cut(s) 4, 481
PflMI CCANNNNNTGG 1 cut(s) 405
PkrI GCNGC 7 cut(s) 28, 139, 148, 151, 297, 300, 397
PleI GAGTC 2 cut(s) 424, 443
PpsI GAGTC 2 cut(s) 424, 443
PshBI ATTAAT 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 311
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 410
PteI GCGCGC 1 cut(s) 437
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
SacII CCGCGG 1 cut(s) 396
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 7 cut(s) 27, 138, 147, 150, 296, 299, 396
Sau3AI GATC 2 cut(s) 190, 202
SchI GAGTC 2 cut(s) 424, 443
ScrFI CCNGG 2 cut(s) 250, 313
SetI ASST 7 cut(s) 61, 111, 219, 303, 335, 357, 447
SfaNI GCATC 1 cut(s) 251
SfcI CTRYAG 2 cut(s) 184, 487
Sfr303I CCGCGG 1 cut(s) 396
SgrBI CCGCGG 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 290, 338
SmoI CTYRAG 2 cut(s) 290, 338
Sse9I AATT 2 cut(s) 101, 256
SsiI CCGC 5 cut(s) 26, 98, 246, 393, 395
StyD4I CCNGG 2 cut(s) 248, 311
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 1 cut(s) 219
TaqI TCGA 2 cut(s) 447, 456
TaqII GACCGA 1 cut(s) 77
TasI AATT 2 cut(s) 101, 256
TatI WGTACW 1 cut(s) 465
TauI GCSGC 2 cut(s) 29, 398
TfiI GAWTC 2 cut(s) 4, 481
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 3 cut(s) 193, 271, 277
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 5 cut(s) 137, 146, 149, 295, 298
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 3 cut(s) 193, 271, 277
Van91I CCANNNNNTGG 1 cut(s) 405
VspI ATTAAT 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.