MD06G1159500.v1.1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000255
Physical Location & Seq
Reverse (-)
30099824 .. 30100243
420 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1159500.v1.1.491

Sequence Viewer

Length: 420 bp
ATGAGGGGTTTGAGTACTACCAGTGATCAGATTCCGAACAAGGATTCACCCGTCGCACCTTCCGCTGGTAGCCCCTGCCATGATCTCTTTTACAAGGTTGTCAAACCATACAAGTACCAATACCGAACAAAGAAAAACCCAGAGGCAGAGGCCGAGGTGGACGCCTCGTGTGCATATCTGAAGCAACCGCTGCCGCTGGCTTGGTCCCATGATCCCTTGACCACCCTCAAGCTCATTGCTAACCTACTACACGGCAGATTCTTCTGGGAAGCGTACTACACGGCGGTGTATTGGCTCCACCACAACCACCCCAAGACCCTATTGTGCTACGCAACGTTTGCCAAGTCGACAGGGAAGTTGTATGGACTTCCGGAGATTCCGTACCGCCTTCTAGAAGATCAAGACGGGATTATAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

140

Amino Acids

15.85

Weight (kDa)

8.37

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 18 - 109 9.8e-14 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 413
AccI GTMKAC 1 cut(s) 347
AccIII TCCGGA 1 cut(s) 370
AciI CCGC 5 cut(s) 63, 188, 194, 284, 385
AclI AACGTT 1 cut(s) 335
AclWI GGATC 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 4 cut(s) 16, 116, 275, 383
AfiI CCNNNNNNNGG 1 cut(s) 65
AleI CACNNNNGTG 1 cut(s) 284
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
AlwI GGATC 1 cut(s) 206
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 39
AvaII GGWCC 1 cut(s) 204
BauI CACGAG 1 cut(s) 166
BbvI GCAGC 1 cut(s) 177
BceAI ACGGC 2 cut(s) 268, 297
BclI TGATCA 1 cut(s) 25
BfaI CTAG 1 cut(s) 392
BisI GCNGC 2 cut(s) 191, 194
BlsI GCNGC 2 cut(s) 192, 195
BmcAI AGTACT 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 2 cut(s) 206, 296
BpuEI CTTGAG 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 234
BseAI TCCGGA 1 cut(s) 370
BseDI CCNNGG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMI GCAATG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 177
BshFI GGCC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 371
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 1 cut(s) 152
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 4 cut(s) 25, 82, 211, 397
BspACI CCGC 5 cut(s) 63, 188, 194, 284, 385
BspANI GGCC 1 cut(s) 152
BspEI TCCGGA 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 206, 296
BspPI GGATC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 4 cut(s) 25, 82, 211, 397
BssNI GRCGYC 1 cut(s) 162
BssSI CACGAG 1 cut(s) 166
Bst2BI CACGAG 1 cut(s) 166
BstACI GRCGYC 1 cut(s) 162
BstAPI GCANNNNNTGC 2 cut(s) 190, 338
BstC8I GCNNGC 1 cut(s) 198
BstKTI GATC 4 cut(s) 28, 85, 214, 400
BstMBI GATC 4 cut(s) 25, 82, 211, 397
BstMWI GCNNNNNNNGC 4 cut(s) 62, 170, 190, 338
BstV1I GCAGC 1 cut(s) 177
BsuRI GGCC 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 204
CseI GACGC 1 cut(s) 170
Csp6I GTAC 4 cut(s) 15, 115, 274, 382
CviAII CATG 2 cut(s) 80, 209
CviJI RGCY 5 cut(s) 72, 152, 200, 232, 295
CviKI_1 RGCY 5 cut(s) 72, 152, 200, 232, 295
CviQI GTAC 4 cut(s) 15, 115, 274, 382
DpnI GATC 4 cut(s) 27, 84, 213, 399
DpnII GATC 4 cut(s) 25, 82, 211, 397
Eco47I GGWCC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 200
FaeI CATG 2 cut(s) 83, 212
FaiI YATR 6 cut(s) 81, 109, 175, 210, 363, 413
FaqI GGGAC 1 cut(s) 190
FatI CATG 2 cut(s) 79, 208
FbaI TGATCA 1 cut(s) 25
FblI GTMKAC 1 cut(s) 347
Fnu4HI GCNGC 2 cut(s) 191, 194
Fsp4HI GCNGC 2 cut(s) 191, 194
FspBI CTAG 1 cut(s) 392
GluI GCNGC 2 cut(s) 191, 194
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 371
HgaI GACGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 2 cut(s) 83, 212
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HinfI GANTC 4 cut(s) 31, 44, 258, 376
HpaII CCGG 1 cut(s) 371
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 2 cut(s) 160, 348
Hpy188I TCNGA 3 cut(s) 30, 36, 180
Hpy188III TCNNGA 3 cut(s) 371, 392, 401
Hpy8I GTNNAC 2 cut(s) 160, 348
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 69, 398
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 170, 190, 338
HpySE526I ACGT 1 cut(s) 335
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 2 cut(s) 83, 212
Kpn2I TCCGGA 1 cut(s) 370
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 4 cut(s) 25, 82, 211, 397
LmnI GCTCC 1 cut(s) 300
LpnPI CCDG 8 cut(s) 34, 51, 88, 153, 182, 250, 336, 384
Lsp1109I GCAGC 1 cut(s) 177
MaeI CTAG 1 cut(s) 392
MaeII ACGT 1 cut(s) 335
MalI GATC 4 cut(s) 27, 84, 213, 399
MboI GATC 4 cut(s) 25, 82, 211, 397
MboII GAAGA 2 cut(s) 253, 407
MnlI CCTC 5 cut(s) 136, 142, 148, 175, 236
MroI TCCGGA 1 cut(s) 370
MslI CAYNNNNRTG 1 cut(s) 284
MspA1I CMGCKG 3 cut(s) 65, 190, 196
MspI CCGG 1 cut(s) 371
MwoI GCNNNNNNNGC 4 cut(s) 62, 170, 190, 338
NdeII GATC 4 cut(s) 25, 82, 211, 397
NlaIII CATG 2 cut(s) 83, 212
NlaIV GGNNCC 2 cut(s) 206, 296
NmeAIII GCCGAG 1 cut(s) 178
OliI CACNNNNGTG 1 cut(s) 284
PfeI GAWTC 4 cut(s) 31, 44, 258, 376
PkrI GCNGC 2 cut(s) 192, 195
PsiI TTATAA 1 cut(s) 413
Psp1406I AACGTT 1 cut(s) 335
PspN4I GGNNCC 2 cut(s) 206, 296
PspPI GGNCC 1 cut(s) 204
RsaI GTAC 4 cut(s) 16, 116, 275, 383
RsaNI GTAC 4 cut(s) 15, 115, 274, 382
RseI CAYNNNNRTG 1 cut(s) 284
SalI GTCGAC 1 cut(s) 346
SatI GCNGC 2 cut(s) 191, 194
Sau3AI GATC 4 cut(s) 25, 82, 211, 397
Sau96I GGNCC 1 cut(s) 204
ScaI AGTACT 1 cut(s) 16
SetI ASST 6 cut(s) 61, 99, 159, 234, 246, 338
SinI GGWCC 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SsiI CCGC 5 cut(s) 63, 188, 194, 284, 385
SspMI CTAG 1 cut(s) 392
TaiI ACGT 1 cut(s) 338
TaqI TCGA 1 cut(s) 347
TatI WGTACW 1 cut(s) 14
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 4 cut(s) 31, 44, 258, 376
TscAI CASTG 1 cut(s) 28
TseI GCWGC 1 cut(s) 190
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 204
XbaI TCTAGA 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 347
XspI CTAG 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.