RchiOBHm_Chr2g0136111

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000255
Physical Location & Seq
Reverse (-)
53355410 .. 53357320
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50693

Sequence Viewer

Length: 1911 bp
ATGGCTCCTCCAAGTCTTCTCGGTCCTCCACAGGTCAACCGATCCACCACCCAACCCGAACCCGCTGCCGGCGACCCCTTCATCGATTCCATGATCGCCGATTTCAACAACCTCAACAAGCCCACCCCTAAACCCCCGATGGGCTTCACCGAGAACGACTCCGCCACATTCCTCTCCTCCGGCAACCCTTGCCTCGATCTTTTCTTCCACGTCGTACCGAACACTCCGGCATCCTATCTCCACCAGCAGCTCCCTCTCGCCTGGGCCCACGACGCCCTAACCACCCTCAAGCTCATCTGCAACCTCCGCGGCGTACGCGGCACCGGAAAGTCCGACAAAGAAGGGTTCTACACGGCTGCTCTCTGGCTCCACCAGCACCACCCCAAAACCCTAGCATGCAACGTCGCTTCCCTCGCCGAGTTCGGCTACTTCAAGGACCTCCCGGAGATTCTCTACCGCCTTCTAGAAGGCCACGACGTCCGACAGACCCAAAAGGAAGAGTGGCTACAGAGAAAACACTCCATCGGGAGAAGGGCCTCCCCGAGAGGCAAGGCGGCGAAGTCGGCGAAAACCAAGAGCCTCGGAGTAACCAGGCAGGAGCCGAAAGAGGCCAGAAAAGCCAAGGCGGCTGAGAGGGTAAGATCGGAAAGGGCAAATATCAGCGCATTGAGGCATCAGAAGACTTTGGAGATGGCCAAGAAGGCCGTTGAGAGGTACCAGCGAGACCCGGATTACCGGTTTTTATATGACCGGGTTTCGGATCTTTTCAGTGAGTGTTTGAAGTCCGATGTCGAGAATCTCAAGGCCAATCAGTACAAGAAGATCAGCTTGGCAGCCAAGTGGTGCCCTTCTATCGATTCCTCGTTTGATAAGGCAACATTGCTATGTGAAAGCATAGCAAGGAACGTTTTCCCCAGGGAATCGTATCCGGAATATCAAGGAATCGAGGAGGCTCATTATGTTTACAGAGTCCGAGACCGGCTGAGGAAGGAGATTCTTGTGCCGCTGAGGAAGGTTTTGGAGTTGCCTGAGGTTTATATTGGAGCTAATGACTGGAATTCGATTCCTTATAACCGAGTCGCCTCGTTGGCCATGAAGCTTTACAAGGAGAAGTTCTTCAAGCATGATGAAGAGAGGTTCAAAAAGTACTTGGAGAATGTGCAGGCCGGCAAGTCCAAGATTGCTGCCGGTGCTCTGCTGCCGCACGAGATCATAGCCTCTCTAAGGGACAGCGATGGGGGCCAAGTGGCCGAGCTTCAGTGGCAGAGAATGGTAGAGGATATGTTGAAGTTGGGGAAGATGAAGAATTGCTTGGCTGTGTGTGACGTGTCCGGAAGCATGTATGGAGAGCCAATGGAGGTGTGTGTGGCTTTGGGGCTTTTGGTGTCTGAGCTGTGTGATGAGCCATGGAAAGGGAAGGTGATCACCTTCAGTCAGAACCCTCAACTGCATTTAATCCGTGGTGAAAGTCTCGAGTCCAAGACCAATTTTATCAGGTTTATGGAATGGGGGATGAACACTGATTTTCAGAAGGTGTTTGATTTGCTTCTCCAGGTGGCGGTTAATGGAAAGTTGAAGCCGGAAAATATGATCAAGCGGATTTTTGTGTTCAGTGACATGGAGTTTGATCGGGCCTCGTCAAATAGATGGGAGACTGATTATGAGGTGATTCAAAGAAAGTATAGGGAGAATGGGTATGGGGATGCTGTGCCACAGATAGTATTTTGGAATCTGAGGGACTCGAGGTCTACTCCTGTGCCAGGGACTCAACCTGGGGTGGCTTTGTTGAGTGGCTTCTCCAAGAACTTGCTCAAGTTGTTCCTGGATTACGATGGGGAAATCCGCCCGGACCTGACCATGGAATTGGCTATCTCTGGCCCTGAGTATCAGAAGCTGGTTGTCCTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

636

Amino Acids

72.42

Weight (kDa)

8.72

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 50 - 434 1.9e-140 Domain of unknown function (DUF2828)
DUF7788 PF25043 436 - 614 7.3e-80 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1071
AatII GACGTC 1 cut(s) 480
Acc65I GGTACC 1 cut(s) 714
AccB1I GGYRCC 3 cut(s) 320, 714, 843
AccI GTMKAC 1 cut(s) 1748
AccII CGCG 2 cut(s) 309, 318
AccIII TCCGGA 2 cut(s) 928, 1331
AclI AACGTT 1 cut(s) 906
AclWI GGATC 2 cut(s) 36, 768
AcoI YGGCCR 3 cut(s) 693, 1089, 1248
AcsI RAATTY 1 cut(s) 1057
AcuI CTGAAG 2 cut(s) 1241, 1414
AcyI GRCGYC 2 cut(s) 273, 477
AfaI GTAC 5 cut(s) 216, 315, 716, 815, 1148
AfiI CCNNNNNNNGG 9 cut(s) 68, 140, 711, 757, 1224, 1412, 1558, 1760, 1858
AflIII ACRYGT 1 cut(s) 1326
AgeI ACCGGT 1 cut(s) 735
AgsI TTSAA 8 cut(s) 106, 433, 781, 1120, 1141, 1288, 1576, 1673
AhdI GACNNNNNGTC 1 cut(s) 1744
AjiI CACGTC 2 cut(s) 211, 1327
AjnI CCWGG 8 cut(s) 260, 590, 914, 1551, 1759, 1771, 1821, 1902
AjuI GAANNNNNNNTTGG 4 cut(s) 812, 844, 1295, 1327
AluBI AGCT 8 cut(s) 250, 292, 828, 1046, 1099, 1255, 1393, 1894
AluI AGCT 8 cut(s) 250, 292, 828, 1046, 1099, 1255, 1393, 1894
Alw21I GWGCWC 1 cut(s) 1195
Alw26I GTCTC 4 cut(s) 717, 969, 1475, 1646
AlwI GGATC 2 cut(s) 36, 768
AlwNI CAGNNNCTG 1 cut(s) 1894
Ama87I CYCGRG 3 cut(s) 541, 1472, 1741
Aor13HI TCCGGA 2 cut(s) 928, 1331
ApaI GGGCCC 1 cut(s) 268
ApeKI GCWGC 6 cut(s) 65, 247, 356, 833, 1184, 1198
ApoI RAATTY 1 cut(s) 1057
ArsI GACNNNNNNTTYG 2 cut(s) 1607, 1639
AsiGI ACCGGT 1 cut(s) 735
Asp700I GAANNNNTTC 2 cut(s) 908, 1115
Asp718I GGTACC 1 cut(s) 714
AspLEI GCGC 1 cut(s) 665
AspS9I GGNCC 9 cut(s) 23, 264, 265, 436, 534, 1240, 1632, 1849, 1877
AsuC2I CCSGG 4 cut(s) 443, 728, 752, 1847
AsuHPI GGTGA 5 cut(s) 139, 1417, 1432, 1475, 1678
AvaI CYCGRG 3 cut(s) 541, 1472, 1741
AvaII GGWCC 3 cut(s) 23, 436, 1849
AxyI CCTNAGG 1 cut(s) 1029
BaeGI GKGCMC 2 cut(s) 268, 848
BalI TGGCCA 2 cut(s) 695, 1091
BanI GGYRCC 3 cut(s) 320, 714, 843
BanII GRGCYC 1 cut(s) 268
BarI GAAGNNNNNNTAC 2 cut(s) 489, 521
BauI CACGAG 1 cut(s) 1205
BbsI GAAGAC 2 cut(s) 8, 686
Bbv12I GWGCWC 1 cut(s) 1195
BbvCI CCTCAGC 2 cut(s) 983, 1007
BbvI GCAGC 6 cut(s) 52, 259, 343, 845, 1171, 1185
BccI CCATC 6 cut(s) 133, 530, 685, 1229, 1641, 1826
BceAI ACGGC 2 cut(s) 369, 689
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 8 cut(s) 262, 592, 916, 1553, 1761, 1773, 1823, 1904
BciVI GTATCC 1 cut(s) 936
BclI TGATCA 2 cut(s) 1422, 1590
BcnI CCSGG 4 cut(s) 443, 728, 752, 1847
BcoDI GTCTC 4 cut(s) 717, 969, 1475, 1646
BfaI CTAG 2 cut(s) 392, 464
BfmI CTRYAG 1 cut(s) 506
BfuI GTATCC 1 cut(s) 936
BglI GCCNNNNNGGC 3 cut(s) 626, 701, 1088
BmcAI AGTACT 1 cut(s) 1148
Bme18I GGWCC 3 cut(s) 23, 436, 1849
BmeRI GACNNNNNGTC 1 cut(s) 1744
BmeT110I CYCGRG 3 cut(s) 541, 1472, 1741
BmgBI CACGTC 2 cut(s) 211, 1327
BmgT120I GGNCC 9 cut(s) 23, 264, 265, 436, 534, 1240, 1632, 1849, 1877
BmiI GGNNCC 8 cut(s) 6, 266, 322, 368, 600, 716, 845, 1241
BmsI GCATC 3 cut(s) 239, 682, 1693
BpiI GAAGAC 2 cut(s) 8, 686
BplI GAGNNNNNCTC 4 cut(s) 143, 175, 1735, 1767
BpmI CTGGAG 1 cut(s) 1535
Bpu10I CCTNAGC 2 cut(s) 983, 1007
BpuEI CTTGAG 3 cut(s) 272, 785, 1796
BpuMI CCSGG 4 cut(s) 443, 728, 752, 1847
Bsa29I ATCGAT 2 cut(s) 84, 855
BsaHI GRCGYC 2 cut(s) 273, 477
BsaI GGTCTC 2 cut(s) 717, 969
BsaWI WCCGGW 4 cut(s) 323, 735, 928, 1331
BsaXI ACNNNNNCTCC 2 cut(s) 1679, 1709
Bsc4I CCNNNNNNNGG 9 cut(s) 68, 140, 711, 757, 1224, 1412, 1558, 1760, 1858
Bse118I RCCGGY 5 cut(s) 68, 735, 978, 1166, 1187
Bse1I ACTGG 1 cut(s) 1058
Bse21I CCTNAGG 1 cut(s) 1029
Bse3DI GCAATG 1 cut(s) 878
BseAI TCCGGA 2 cut(s) 928, 1331
BseBI CCWGG 8 cut(s) 262, 592, 916, 1553, 1761, 1773, 1823, 1904
BseCI ATCGAT 2 cut(s) 84, 855
BseGI GGATG 3 cut(s) 230, 1518, 1708
BseLI CCNNNNNNNGG 9 cut(s) 68, 140, 711, 757, 1224, 1412, 1558, 1760, 1858
BseMI GCAATG 1 cut(s) 878
BseMII CTCAG 7 cut(s) 621, 974, 998, 1020, 1380, 1724, 1872
BseNI ACTGG 1 cut(s) 1058
BseRI GAGGAG 2 cut(s) 166, 962
BseSI GKGCMC 2 cut(s) 268, 848
BseXI GCAGC 6 cut(s) 52, 259, 343, 845, 1171, 1185
BsgI GTGCAG 1 cut(s) 1181
Bsh1236I CGCG 2 cut(s) 309, 318
BshNI GGYRCC 3 cut(s) 320, 714, 843
BshTI ACCGGT 1 cut(s) 735
BshVI ATCGAT 2 cut(s) 84, 855
BsiHKAI GWGCWC 1 cut(s) 1195
BsiHKCI CYCGRG 3 cut(s) 541, 1472, 1741
BsiWI CGTACG 1 cut(s) 313
BslFI GGGAC 3 cut(s) 1241, 1751, 1777
BslI CCNNNNNNNGG 9 cut(s) 68, 140, 711, 757, 1224, 1412, 1558, 1760, 1858
BsmAI GTCTC 4 cut(s) 717, 969, 1475, 1646
BsmFI GGGAC 3 cut(s) 1241, 1751, 1777
Bso31I GGTCTC 2 cut(s) 717, 969
BsoBI CYCGRG 3 cut(s) 541, 1472, 1741
Bsp120I GGGCCC 1 cut(s) 264
Bsp1286I GDGCHC 3 cut(s) 268, 848, 1195
Bsp13I TCCGGA 2 cut(s) 928, 1331
Bsp19I CCATGG 2 cut(s) 1406, 1857
BspCNI CTCAG 7 cut(s) 622, 975, 999, 1021, 1381, 1725, 1873
BspDI ATCGAT 2 cut(s) 84, 855
BspEI TCCGGA 2 cut(s) 928, 1331
BspFNI CGCG 2 cut(s) 309, 318
BspLI GGNNCC 8 cut(s) 6, 266, 322, 368, 600, 716, 845, 1241
BspPI GGATC 2 cut(s) 36, 768
BspT107I GGYRCC 3 cut(s) 320, 714, 843
BspTNI GGTCTC 2 cut(s) 717, 969
BsrDI GCAATG 1 cut(s) 878
BsrFI RCCGGY 5 cut(s) 68, 735, 978, 1166, 1187
BsrI ACTGG 1 cut(s) 1058
BssAI RCCGGY 5 cut(s) 68, 735, 978, 1166, 1187
BssNI GRCGYC 2 cut(s) 273, 477
BssSI CACGAG 1 cut(s) 1205
BssT1I CCWWGG 3 cut(s) 621, 1406, 1857
Bst2BI CACGAG 1 cut(s) 1205
Bst2UI CCWGG 8 cut(s) 262, 592, 916, 1553, 1761, 1773, 1823, 1904
Bst6I CTCTTC 2 cut(s) 492, 1125
BstACI GRCGYC 2 cut(s) 273, 477
BstAPI GCANNNNNTGC 1 cut(s) 189
BstC8I GCNNGC 4 cut(s) 70, 397, 1164, 1168
BstDEI CTNAG 8 cut(s) 630, 983, 1007, 1029, 1223, 1389, 1733, 1881
BstDSI CCRYGG 4 cut(s) 307, 1406, 1459, 1857
BstENI CCTNNNNNAGG 2 cut(s) 1222, 1758
BstF5I GGATG 3 cut(s) 230, 1518, 1708
BstFNI CGCG 2 cut(s) 309, 318
BstHHI GCGC 1 cut(s) 665
BstMAI GTCTC 4 cut(s) 717, 969, 1475, 1646
BstNI CCWGG 8 cut(s) 262, 592, 916, 1553, 1761, 1773, 1823, 1904
BstNSI RCATGY 2 cut(s) 399, 1342
BstSFI CTRYAG 1 cut(s) 506
BstSLI GKGCMC 2 cut(s) 268, 848
BstUI CGCG 2 cut(s) 309, 318
BstV1I GCAGC 6 cut(s) 52, 259, 343, 845, 1171, 1185
BstV2I GAAGAC 2 cut(s) 8, 686
BstX2I RGATCY 1 cut(s) 760
BstXI CCANNNNNNTGG 1 cut(s) 1864
BstYI RGATCY 1 cut(s) 760
Bsu15I ATCGAT 2 cut(s) 84, 855
Bsu36I CCTNAGG 1 cut(s) 1029
BsuI GTATCC 1 cut(s) 936
BsuTUI ATCGAT 2 cut(s) 84, 855
BtgI CCRYGG 4 cut(s) 307, 1406, 1459, 1857
BtgZI GCGATG 1 cut(s) 1248
BtrI CACGTC 2 cut(s) 211, 1327
BtsCI GGATG 3 cut(s) 230, 1518, 1708
BtsIMutI CAGTG 4 cut(s) 775, 1265, 1518, 1618
Cac8I GCNNGC 4 cut(s) 70, 397, 1164, 1168
CaiI CAGNNNCTG 1 cut(s) 1894
CfoI GCGC 1 cut(s) 665
Cfr10I RCCGGY 5 cut(s) 68, 735, 978, 1166, 1187
Cfr13I GGNCC 9 cut(s) 23, 264, 265, 436, 534, 1240, 1632, 1849, 1877
Cfr42I CCGCGG 1 cut(s) 310
ClaI ATCGAT 2 cut(s) 84, 855
CseI GACGC 1 cut(s) 281
Csp6I GTAC 5 cut(s) 215, 314, 715, 814, 1147
CspAI ACCGGT 1 cut(s) 735
CviAII CATG 8 cut(s) 91, 396, 1093, 1124, 1339, 1407, 1618, 1858
CviQI GTAC 5 cut(s) 215, 314, 715, 814, 1147
DdeI CTNAG 8 cut(s) 630, 983, 1007, 1029, 1223, 1389, 1733, 1881
DriI GACNNNNNGTC 1 cut(s) 1744
EaeI YGGCCR 3 cut(s) 693, 1089, 1248
Eam1104I CTCTTC 2 cut(s) 492, 1125
Eam1105I GACNNNNNGTC 1 cut(s) 1744
EarI CTCTTC 2 cut(s) 492, 1125
EciI GGCGGA 2 cut(s) 151, 1832
Eco130I CCWWGG 3 cut(s) 621, 1406, 1857
Eco24I GRGCYC 1 cut(s) 268
Eco31I GGTCTC 2 cut(s) 717, 969
Eco47I GGWCC 3 cut(s) 23, 436, 1849
Eco57I CTGAAG 2 cut(s) 1241, 1414
Eco81I CCTNAGG 1 cut(s) 1029
Eco88I CYCGRG 3 cut(s) 541, 1472, 1741
EcoNI CCTNNNNNAGG 2 cut(s) 1222, 1758
EcoO109I RGGNCCY 2 cut(s) 436, 534
EcoRI GAATTC 1 cut(s) 1057
EcoRII CCWGG 8 cut(s) 260, 590, 914, 1551, 1759, 1771, 1821, 1902
EcoT14I CCWWGG 3 cut(s) 621, 1406, 1857
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 3 cut(s) 621, 1406, 1857
FaeI CATG 8 cut(s) 94, 399, 1096, 1127, 1342, 1410, 1621, 1861
FalI AAGNNNNNCTT 4 cut(s) 812, 844, 1295, 1327
FaqI GGGAC 3 cut(s) 1241, 1751, 1777
FatI CATG 8 cut(s) 90, 395, 1092, 1123, 1338, 1406, 1617, 1857
FauI CCCGC 1 cut(s) 70
FbaI TGATCA 2 cut(s) 1422, 1590
FblI GTMKAC 1 cut(s) 1748
FokI GGATG 3 cut(s) 217, 1525, 1715
FriOI GRGCYC 1 cut(s) 268
FspBI CTAG 2 cut(s) 392, 464
GlaI GCGC 1 cut(s) 664
GsuI CTGGAG 1 cut(s) 1535
HgaI GACGC 1 cut(s) 281
HhaI GCGC 1 cut(s) 665
Hin1I GRCGYC 2 cut(s) 273, 477
Hin1II CATG 8 cut(s) 94, 399, 1096, 1127, 1342, 1410, 1621, 1861
Hin6I GCGC 1 cut(s) 663
HinP1I GCGC 1 cut(s) 663
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 1097
HphI GGTGA 5 cut(s) 139, 1417, 1432, 1475, 1678
Hpy166II GTNNAC 3 cut(s) 37, 964, 1749
Hpy188III TCNNGA 6 cut(s) 464, 526, 793, 929, 1332, 1472
Hpy8I GTNNAC 3 cut(s) 37, 964, 1749
Hpy99I CGWCG 4 cut(s) 215, 275, 407, 479
HpyCH4IV ACGT 5 cut(s) 210, 402, 477, 906, 1326
HpyCH4V TGCA 4 cut(s) 300, 399, 1162, 1450
HpyF3I CTNAG 8 cut(s) 630, 983, 1007, 1029, 1223, 1389, 1733, 1881
HpySE526I ACGT 5 cut(s) 210, 402, 477, 906, 1326
Hsp92I GRCGYC 2 cut(s) 273, 477
Hsp92II CATG 8 cut(s) 94, 399, 1096, 1127, 1342, 1410, 1621, 1861
HspAI GCGC 1 cut(s) 663
Kpn2I TCCGGA 2 cut(s) 928, 1331
KpnI GGTACC 1 cut(s) 718
KroI GCCGGC 2 cut(s) 68, 1166
KroNI GCCGGC 2 cut(s) 70, 1168
Ksp22I TGATCA 2 cut(s) 1422, 1590
KspI CCGCGG 1 cut(s) 310
LmnI GCTCC 5 cut(s) 10, 255, 372, 598, 1043
Lsp1109I GCAGC 6 cut(s) 52, 259, 343, 845, 1171, 1185
LweI GCATC 3 cut(s) 239, 682, 1693
MaeI CTAG 2 cut(s) 392, 464
MaeII ACGT 5 cut(s) 210, 402, 477, 906, 1326
MaeIII GTNAC 3 cut(s) 586, 1322, 1613
MboII GAAGA 9 cut(s) 8, 196, 509, 691, 832, 1108, 1142, 1309, 1315
MflI RGATCY 1 cut(s) 760
MhlI GDGCHC 3 cut(s) 268, 848, 1195
MlsI TGGCCA 2 cut(s) 695, 1091
MluCI AATT 4 cut(s) 1057, 1306, 1486, 1862
MluNI TGGCCA 2 cut(s) 695, 1091
MlyI GAGTC 6 cut(s) 152, 978, 1086, 1484, 1733, 1759
MmeI TCCRAC 2 cut(s) 357, 505
Mox20I TGGCCA 2 cut(s) 695, 1091
MroI TCCGGA 2 cut(s) 928, 1331
MroNI GCCGGC 2 cut(s) 68, 1166
MroXI GAANNNNTTC 2 cut(s) 908, 1115
MscI TGGCCA 2 cut(s) 695, 1091
MseI TTAA 2 cut(s) 1454, 1563
MslI CAYNNNNRTG 1 cut(s) 883
Msp20I TGGCCA 2 cut(s) 695, 1091
MspA1I CMGCKG 3 cut(s) 65, 309, 1006
MvaI CCWGG 8 cut(s) 262, 592, 916, 1553, 1761, 1773, 1823, 1904
MvnI CGCG 2 cut(s) 309, 318
NaeI GCCGGC 2 cut(s) 70, 1168
NciI CCSGG 4 cut(s) 443, 728, 752, 1847
NcoI CCATGG 2 cut(s) 1406, 1857
NgoMIV GCCGGC 2 cut(s) 68, 1166
NlaIII CATG 8 cut(s) 94, 399, 1096, 1127, 1342, 1410, 1621, 1861
NlaIV GGNNCC 8 cut(s) 6, 266, 322, 368, 600, 716, 845, 1241
NmeAIII GCCGAG 2 cut(s) 442, 1276
NmuCI GTSAC 2 cut(s) 1322, 1613
NspI RCATGY 2 cut(s) 399, 1342
PaeI GCATGC 1 cut(s) 399
PaeR7I CTCGAG 2 cut(s) 1472, 1741
PasI CCCWGGG 1 cut(s) 915
PdiI GCCGGC 2 cut(s) 70, 1168
PdmI GAANNNNTTC 2 cut(s) 908, 1115
Pfl23II CGTACG 1 cut(s) 313
PfoI TCCNGGA 3 cut(s) 441, 1821, 1902
PinAI ACCGGT 1 cut(s) 735
PleI GAGTC 6 cut(s) 152, 977, 1085, 1483, 1733, 1759
PpsI GAGTC 6 cut(s) 152, 977, 1085, 1483, 1733, 1759
PpuMI RGGWCCY 1 cut(s) 436
PsiI TTATAA 1 cut(s) 1071
Psp1406I AACGTT 1 cut(s) 906
Psp5II RGGWCCY 1 cut(s) 436
Psp6I CCWGG 8 cut(s) 260, 590, 914, 1551, 1759, 1771, 1821, 1902
PspGI CCWGG 8 cut(s) 260, 590, 914, 1551, 1759, 1771, 1821, 1902
PspLI CGTACG 1 cut(s) 313
PspN4I GGNNCC 8 cut(s) 6, 266, 322, 368, 600, 716, 845, 1241
PspOMI GGGCCC 1 cut(s) 264
PspPI GGNCC 9 cut(s) 23, 264, 265, 436, 534, 1240, 1632, 1849, 1877
PspPPI RGGWCCY 1 cut(s) 436
PspXI VCTCGAGB 1 cut(s) 1741
PstNI CAGNNNCTG 1 cut(s) 1894
PsuI RGATCY 1 cut(s) 760
RsaI GTAC 5 cut(s) 216, 315, 716, 815, 1148
RsaNI GTAC 5 cut(s) 215, 314, 715, 814, 1147
RseI CAYNNNNRTG 1 cut(s) 883
SacII CCGCGG 1 cut(s) 310
SaqAI TTAA 2 cut(s) 1454, 1563
Sau96I GGNCC 9 cut(s) 23, 264, 265, 436, 534, 1240, 1632, 1849, 1877
ScaI AGTACT 1 cut(s) 1148
SchI GAGTC 6 cut(s) 152, 978, 1086, 1484, 1733, 1759
SduI GDGCHC 3 cut(s) 268, 848, 1195
SfaNI GCATC 3 cut(s) 239, 682, 1693
SfcI CTRYAG 1 cut(s) 506
SfiI GGCCNNNNNGGCC 1 cut(s) 701
Sfr274I CTCGAG 2 cut(s) 1472, 1741
Sfr303I CCGCGG 1 cut(s) 310
SgrBI CCGCGG 1 cut(s) 310
SinI GGWCC 3 cut(s) 23, 436, 1849
SlaI CTCGAG 2 cut(s) 1472, 1741
SmiMI CAYNNNNRTG 1 cut(s) 883
SmlI CTYRAG 5 cut(s) 287, 800, 1472, 1741, 1811
SmoI CTYRAG 5 cut(s) 287, 800, 1472, 1741, 1811
SphI GCATGC 1 cut(s) 399
Sse9I AATT 4 cut(s) 1057, 1306, 1486, 1862
SspMI CTAG 2 cut(s) 392, 464
StyI CCWWGG 3 cut(s) 621, 1406, 1857
TaiI ACGT 5 cut(s) 213, 405, 480, 909, 1329
TaqI TCGA 8 cut(s) 84, 195, 792, 855, 945, 1061, 1473, 1742
TaqII GACCGA 1 cut(s) 11
TasI AATT 4 cut(s) 1057, 1306, 1486, 1862
TatI WGTACW 2 cut(s) 813, 1146
TauI GCSGC 6 cut(s) 312, 321, 557, 629, 1006, 1204
Tru1I TTAA 2 cut(s) 1454, 1563
Tru9I TTAA 2 cut(s) 1454, 1563
TscAI CASTG 4 cut(s) 775, 1265, 1525, 1618
TseFI GTSAC 2 cut(s) 1322, 1613
TseI GCWGC 6 cut(s) 65, 247, 356, 833, 1184, 1198
Tsp45I GTSAC 2 cut(s) 1322, 1613
TspDTI ATGAA 5 cut(s) 70, 1109, 1143, 1316, 1529
TspGWI ACGGA 1 cut(s) 1448
TspRI CASTG 4 cut(s) 775, 1265, 1525, 1618
VpaK11BI GGWCC 3 cut(s) 23, 436, 1849
XagI CCTNNNNNAGG 2 cut(s) 1222, 1758
XapI RAATTY 1 cut(s) 1057
XbaI TCTAGA 1 cut(s) 463
XceI RCATGY 2 cut(s) 399, 1342
XhoI CTCGAG 2 cut(s) 1472, 1741
XmiI GTMKAC 1 cut(s) 1748
XmnI GAANNNNTTC 2 cut(s) 908, 1115
XspI CTAG 2 cut(s) 392, 464
ZraI GACGTC 1 cut(s) 478
ZrmI AGTACT 1 cut(s) 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.