Prupe.4G045100_v2.0.a1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000255
Physical Location & Seq
Forward (+)
2162412 .. 2163464
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G045100.1

Sequence Viewer

Length: 417 bp
ATGGAGGCTGGTTGCAACACTGATTTCCAAAAGGTGTTTGATTTGATTCTGAAAGTGCCCGTGAAGGGGAATTTGAAGCCGGAGGACATGATAAAGAGGGTGTTTGTGTTCAGCGACATGGAGTTTGCTGAGGCTTCGTCGTCTAGCAGATGGGAGACTGATTACGCTGTGATACAGAAGAAGTTTGAGAAGCAAGGGTATGGTAATGCGGTGCCGCAGATTGTGTTTTGGAATCTGAGGCACTCCAAGGCGACGCCTGTGGTGACCGGGACACAATCCGGAGTGGCTCTGTTGAGTGGCTTCTCTAAGAATTTGCTCAAGCTCTTCTTGGATAATGACGGGGAAGTTCAACCGGACCTTGCCATGGAAGCTGCCATATCCGGCCAAGAGTATCAGAAGCTGGTTGTGTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

139

Amino Acids

15.39

Weight (kDa)

5.2

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccIII TCCGGA 1 cut(s) 278
AciI CCGC 2 cut(s) 209, 215
AcoI YGGCCR 1 cut(s) 382
AcsI RAATTY 2 cut(s) 70, 310
AcyI GRCGYC 1 cut(s) 254
AfiI CCNNNNNNNGG 3 cut(s) 65, 66, 364
AgsI TTSAA 2 cut(s) 76, 350
AluBI AGCT 3 cut(s) 322, 371, 400
AluI AGCT 3 cut(s) 322, 371, 400
Alw26I GTCTC 1 cut(s) 149
AlwNI CAGNNNCTG 1 cut(s) 400
Aor13HI TCCGGA 1 cut(s) 278
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 2 cut(s) 70, 310
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AspS9I GGNCC 1 cut(s) 355
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 355
BaeGI GKGCMC 1 cut(s) 60
BanI GGYRCC 1 cut(s) 211
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 358
BccI CCATC 1 cut(s) 144
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 144
BisI GCNGC 2 cut(s) 215, 372
BlsI GCNGC 2 cut(s) 216, 373
Bme1390I CCNGG 1 cut(s) 268
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 268
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 246, 363
BsaWI WCCGGW 2 cut(s) 278, 352
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 66, 364
BseAI TCCGGA 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 246, 363
BseLI CCNNNNNNNGG 3 cut(s) 65, 66, 364
BseMII CTCAG 2 cut(s) 120, 227
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 1 cut(s) 358
BshFI GGCC 1 cut(s) 384
BshNI GGYRCC 1 cut(s) 211
BsiSI CCGG 5 cut(s) 80, 267, 279, 353, 381
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 3 cut(s) 65, 66, 364
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 1 cut(s) 384
Bsp1286I GDGCHC 1 cut(s) 60
Bsp13I TCCGGA 1 cut(s) 278
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 2 cut(s) 209, 215
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 2 cut(s) 121, 228
BspEI TCCGGA 1 cut(s) 278
BspLI GGNNCC 1 cut(s) 213
BspQI GCTCTTC 1 cut(s) 329
BspT107I GGYRCC 1 cut(s) 211
BssECI CCNNGG 2 cut(s) 246, 363
BssNI GRCGYC 1 cut(s) 254
BssT1I CCWWGG 2 cut(s) 246, 363
Bst6I CTCTTC 1 cut(s) 329
BstACI GRCGYC 1 cut(s) 254
BstDEI CTNAG 3 cut(s) 129, 236, 306
BstDSI CCRYGG 1 cut(s) 363
BstEII GGTNACC 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstPI GGTNACC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 266
BstSLI GKGCMC 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 358
BsuRI GGCC 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 18
CaiI CAGNNNCTG 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 355
CseI GACGC 1 cut(s) 262
CviAII CATG 3 cut(s) 88, 118, 364
CviJI RGCY 9 cut(s) 8, 79, 134, 287, 300, 322, 371, 384, 400
CviKI_1 RGCY 9 cut(s) 8, 79, 134, 287, 300, 322, 371, 384, 400
DdeI CTNAG 3 cut(s) 129, 236, 306
EaeI YGGCCR 1 cut(s) 382
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco130I CCWWGG 2 cut(s) 246, 363
Eco47I GGWCC 1 cut(s) 355
Eco91I GGTNACC 1 cut(s) 262
EcoO65I GGTNACC 1 cut(s) 262
EcoT14I CCWWGG 2 cut(s) 246, 363
ErhI CCWWGG 2 cut(s) 246, 363
FaeI CATG 3 cut(s) 91, 121, 367
FaiI YATR 5 cut(s) 89, 119, 201, 365, 377
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 1 cut(s) 283
FatI CATG 3 cut(s) 87, 117, 363
Fnu4HI GCNGC 2 cut(s) 215, 372
Fsp4HI GCNGC 2 cut(s) 215, 372
FspBI CTAG 1 cut(s) 144
GluI GCNGC 2 cut(s) 215, 372
HaeIII GGCC 1 cut(s) 384
HapII CCGG 5 cut(s) 80, 267, 279, 353, 381
HgaI GACGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 3 cut(s) 91, 121, 367
HinfI GANTC 2 cut(s) 46, 232
HpaII CCGG 5 cut(s) 80, 267, 279, 353, 381
HphI GGTGA 1 cut(s) 274
Hpy188I TCNGA 3 cut(s) 51, 237, 396
Hpy188III TCNNGA 1 cut(s) 279
Hpy99I CGWCG 2 cut(s) 142, 256
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 3 cut(s) 129, 236, 306
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 3 cut(s) 91, 121, 367
Kpn2I TCCGGA 1 cut(s) 278
LguI GCTCTTC 1 cut(s) 329
LpnPI CCDG 7 cut(s) 93, 270, 280, 292, 366, 386, 394
Lsp1109I GCAGC 1 cut(s) 358
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 262
MboII GAAGA 2 cut(s) 190, 316
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 2 cut(s) 70, 310
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 4 cut(s) 76, 90, 124, 231
MroI TCCGGA 1 cut(s) 278
MspI CCGG 5 cut(s) 80, 267, 279, 353, 381
MspR9I CCNGG 1 cut(s) 268
MwoI GCNNNNNNNGC 1 cut(s) 368
NciI CCSGG 1 cut(s) 268
NcoI CCATGG 1 cut(s) 363
NlaIII CATG 3 cut(s) 91, 121, 367
NlaIV GGNNCC 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 329
PfeI GAWTC 2 cut(s) 46, 232
PkrI GCNGC 2 cut(s) 216, 373
PspEI GGTNACC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 355
PstNI CAGNNNCTG 1 cut(s) 400
SapI GCTCTTC 1 cut(s) 329
SatI GCNGC 2 cut(s) 215, 372
Sau96I GGNCC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 268
SduI GDGCHC 1 cut(s) 60
SetI ASST 5 cut(s) 36, 324, 360, 373, 402
SinI GGWCC 1 cut(s) 355
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 2 cut(s) 70, 310
SsiI CCGC 2 cut(s) 209, 215
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 266
StyI CCWWGG 2 cut(s) 246, 363
TasI AATT 2 cut(s) 70, 310
TauI GCSGC 1 cut(s) 217
TfiI GAWTC 2 cut(s) 46, 232
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 262
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 2 cut(s) 70, 310
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.