Rw7G005840

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000255
Physical Location & Seq
Reverse (-)
4902228 .. 4904175
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G005840.1

Sequence Viewer

Length: 1914 bp
ATGGCTCCTCCTAGTCTTCTTGGCCCTCCACAGGTCACCAATCCCGTCCCACCGGCCCAACCCGACTCCGGCGCAAGACCACCGATGGGCTTGACCGAGAATTGTTCCCCAACCTTCTTGACCTCCGGCAACCCCTGCCTTGATCTCTTCTTCCAAGTCCTCCCTCTCGCCTGGGCCTACAATCCCCTGACCACCCTAAAGCTCATCTGCAACCTGAGAGGCGTACGTGGCACGGGGAAGTCCGATAAAGAAGGGTTCTACACGGCGGCGCTTTGGCTCCACAAGAATCACCCCAAAACCCTAGCGTGCAACGCTGCGTCTTTGGCTGAATTCGGTTACTTCAAGGACTTGCCGGAGATTCTGTACCGCCTTCTAGAAGGCCAGGACGTGAGGGAGAAGCAAAAGATGGATTGGCAGTGCCGAAAACGGACTATTCGGAGGCTGGTTGGCCGAGTTAGTATTGGACGCCGGAGGGTCAGACGTGGCGGTTGTGCTAAATTGAATAAATCAAAGCAGGTCGGCAAGCCCAAAGCTGTCAGCCGGCAGAAGTTGCCTAAGGATGTAAGGGAAAAGATGGCGGCGGAGAAGCGGAGATTGGAGAAGGAGAAAGTGAGTGCAGCGAGGCTGGAGAAGAAGATTGCGATGGCTAAGAAGGCGGTTGCAAGGTACCAGCGTGACCCGGATTACCGATTCTTGCATGACAGGGTTTCTGATCTTTTCGCTGACTGCTTGAAATCTGATATGGAGTGTCTCAAGAACAACAATACTAACACGATAGGCCTGGCGGCAAAGTGGTGTCCTTCGCTTGATTCTTCGTTTGATCGAGCCACATTGCTCTGCGAAAGCATTGCGAGGAAAATTTTCACCCGAGAATTGTATCCGGAATATGAAGGAGTTGAGGATGCACATTATGCTTACAGAGTCCGAGACCGGCTGAGGAAGGATGTGTTGGTGCCATTGAGGAAGGTGTTGCAGCTGCCGGAGGTTTATATGGGTGCCAACAAGTGGGGGGAGATTCCCTACAAGAGAGTGGCCTCAGTGGCCATGAAGCTTTACAAGGGGAAGTTCTTGAAGCACGATGAAGAGAGGTTTAAGAAGTATTTGGAGGATGTGAAAGCCGGGAAGGCCACTATTGCGGCTGGTGCTCTGCTTCCACATGAGATCATAGCCTCTCTGAACGATGAGGATGGTGGGGAAGTGGGTGAGCTTCAGTGGAAGAGAATGGTGGAGGACCTGGTGGAGCTTGGCAAGTTGAGGAATTGTATGGCTGTGTGTGACGTGTCCGGAAGCATGGAAGGGACTCCTATGGAGGTGTGTGTGGCTTTGGGGCTGTTGGTGTCGGAATTGAGTGAAGAGCCATGGAAAGGAAAGGTGATCACTTTCAGTCAGAACCCTCAGTTGCATTTGATTCAAGGCGACGATCTTAGCTCCAAGTGCGAGTTTGTGAGGAGGATGGAATGGGGGATGAACACTGATTTACAAAAGGTGTTTGATCTGATTCTCCAAGTGGCTGTGAAGGGGAAGTTGAAGCCGGAGCAGATGATAAAGAGGGTGTTTGTGTTCAGCGACATGGAGTTTGATGAGGCTTCGGGGCATAGGGGATATGGATATGGGTATTATGGAAGGGAGGATAATGAGCCCCAGAGCTGGGAGACCGATTATGAGGTGATACAGAGAAAGTATAAGGAAAATGGGTATGGTGATGCGGTGCCTCAGATCGTGTTTTGGAATCTCAGGGACTCAGGGTCTACACCGGTGACTGCAACAACACCAGGGGTGGCTCTGTTGAGTGGCTTCTCCAAGAATGCCCTCAAGATGTTCTTGAATGATGATATTGAGCAAATTCAGCCGGATATTGTCATGGAAGCTGCCATCTCCGGTGAGGAGTATCAAAGGCTGGTGTTGGTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

637

Amino Acids

72.14

Weight (kDa)

8.91

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 32 - 418 1.2e-129 Domain of unknown function (DUF2828)
DUF7788 PF25043 420 - 614 5.5e-81 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 505
Acc65I GGTACC 1 cut(s) 666
AccB1I GGYRCC 4 cut(s) 666, 952, 995, 1708
AccB7I CCANNNNNTGG 1 cut(s) 1005
AccI GTMKAC 1 cut(s) 1748
AccIII TCCGGA 2 cut(s) 880, 1283
AcoI YGGCCR 2 cut(s) 448, 1041
AcsI RAATTY 3 cut(s) 329, 858, 1842
AcuI CTGAAG 1 cut(s) 1193
AcyI GRCGYC 1 cut(s) 466
AfaI GTAC 3 cut(s) 225, 365, 668
AfiI CCNNNNNNNGG 7 cut(s) 31, 68, 86, 1005, 1364, 1647, 1648
AflIII ACRYGT 1 cut(s) 1278
AgeI ACCGGT 1 cut(s) 1753
AgsI TTSAA 7 cut(s) 343, 502, 733, 1072, 1412, 1528, 1825
AhdI GACNNNNNGTC 1 cut(s) 1744
AjiI CACGTC 3 cut(s) 388, 482, 1279
AjnI CCWGG 5 cut(s) 170, 381, 780, 1233, 1771
AjuI GAANNNNNNNTTGG 4 cut(s) 578, 610, 932, 964
AluBI AGCT 9 cut(s) 202, 533, 976, 1051, 1207, 1243, 1428, 1647, 1868
AluI AGCT 9 cut(s) 202, 533, 976, 1051, 1207, 1243, 1428, 1647, 1868
Alw21I GWGCWC 1 cut(s) 1147
Alw26I GTCTC 3 cut(s) 755, 921, 1646
Ama87I CYCGRG 1 cut(s) 867
Aor13HI TCCGGA 2 cut(s) 880, 1283
AoxI GGCC 9 cut(s) 22, 54, 174, 379, 448, 778, 1032, 1041, 1125
ApeKI GCWGC 5 cut(s) 314, 617, 973, 976, 1868
ApoI RAATTY 3 cut(s) 329, 858, 1842
ArsI GACNNNNNNTTYG 2 cut(s) 1559, 1591
AsiGI ACCGGT 1 cut(s) 1753
Asp700I GAANNNNTTC 1 cut(s) 860
Asp718I GGTACC 1 cut(s) 666
AspLEI GCGC 2 cut(s) 74, 271
AspS9I GGNCC 4 cut(s) 23, 55, 174, 1231
AsuC2I CCSGG 2 cut(s) 680, 1120
AsuHPI GGTGA 9 cut(s) 28, 281, 856, 1214, 1384, 1678, 1712, 1768, 1892
AvaI CYCGRG 1 cut(s) 867
AvaII GGWCC 1 cut(s) 1231
AxyI CCTNAGG 1 cut(s) 555
BaeI ACNNNNGTAYC 2 cut(s) 658, 691
BalI TGGCCA 1 cut(s) 1043
BanI GGYRCC 4 cut(s) 666, 952, 995, 1708
BanII GRGCYC 1 cut(s) 1641
BbsI GAAGAC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 1147
BbvCI CCTCAGC 1 cut(s) 935
BbvI GCAGC 5 cut(s) 301, 629, 963, 985, 1855
BccI CCATC 7 cut(s) 79, 400, 568, 637, 1181, 1447, 1880
BceAI ACGGC 1 cut(s) 279
BcgI CGANNNNNNTGC 2 cut(s) 830, 864
BciT130I CCWGG 5 cut(s) 172, 383, 782, 1235, 1773
BciVI GTATCC 1 cut(s) 888
BclI TGATCA 1 cut(s) 1374
BcnI CCSGG 2 cut(s) 680, 1120
BcoDI GTCTC 3 cut(s) 755, 921, 1646
BfaI CTAG 3 cut(s) 12, 302, 374
BfoI RGCGCY 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 505
BfuI GTATCC 1 cut(s) 888
BglI GCCNNNNNGGC 2 cut(s) 1040, 1124
BisI GCNGC 9 cut(s) 267, 315, 579, 618, 786, 974, 977, 1137, 1869
BlsI GCNGC 9 cut(s) 268, 316, 580, 619, 787, 975, 978, 1138, 1870
Bme1390I CCNGG 7 cut(s) 172, 383, 680, 782, 1120, 1235, 1773
Bme18I GGWCC 1 cut(s) 1231
BmeRI GACNNNNNGTC 1 cut(s) 1744
BmeT110I CYCGRG 1 cut(s) 867
BmgBI CACGTC 3 cut(s) 388, 482, 1279
BmgT120I GGNCC 4 cut(s) 23, 55, 174, 1231
BmiI GGNNCC 6 cut(s) 6, 278, 668, 954, 997, 1710
BmrFI CCNGG 7 cut(s) 172, 383, 680, 782, 1120, 1235, 1773
BmsI GCATC 2 cut(s) 892, 1693
BpiI GAAGAC 1 cut(s) 8
BpmI CTGGAG 1 cut(s) 647
Bpu10I CCTNAGC 1 cut(s) 935
BpuEI CTTGAG 2 cut(s) 737, 1796
BpuMI CCSGG 2 cut(s) 680, 1120
BsaAI YACGTR 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 466
BsaI GGTCTC 2 cut(s) 921, 1646
BsaJI CCNNGG 3 cut(s) 171, 1358, 1772
BsaWI WCCGGW 4 cut(s) 880, 1283, 1753, 1877
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 7 cut(s) 31, 68, 86, 1005, 1364, 1647, 1648
Bse118I RCCGGY 4 cut(s) 52, 540, 930, 1753
Bse21I CCTNAGG 1 cut(s) 555
Bse3DI GCAATG 2 cut(s) 830, 846
BseAI TCCGGA 2 cut(s) 880, 1283
BseBI CCWGG 5 cut(s) 172, 383, 782, 1235, 1773
BseDI CCNNGG 3 cut(s) 171, 1358, 1772
BseGI GGATG 7 cut(s) 565, 907, 949, 1114, 1192, 1458, 1470
BseLI CCNNNNNNNGG 7 cut(s) 31, 68, 86, 1005, 1364, 1647, 1648
BseMI GCAATG 2 cut(s) 830, 846
BseMII CTCAG 7 cut(s) 206, 926, 1050, 1409, 1727, 1747, 1755
BseRI GAGGAG 2 cut(s) 1462, 1898
BseXI GCAGC 5 cut(s) 301, 629, 963, 985, 1855
BseYI CCCAGC 1 cut(s) 1647
BsgI GTGCAG 1 cut(s) 636
BshFI GGCC 9 cut(s) 24, 56, 176, 381, 450, 780, 1034, 1043, 1127
BshNI GGYRCC 4 cut(s) 666, 952, 995, 1708
BshTI ACCGGT 1 cut(s) 1753
BsiHKAI GWGCWC 1 cut(s) 1147
BsiHKCI CYCGRG 1 cut(s) 867
BsiWI CGTACG 1 cut(s) 223
BslFI GGGAC 3 cut(s) 32, 1312, 1751
BslI CCNNNNNNNGG 7 cut(s) 31, 68, 86, 1005, 1364, 1647, 1648
BsmAI GTCTC 3 cut(s) 755, 921, 1646
BsmFI GGGAC 3 cut(s) 32, 1312, 1751
BsmI GAATGC 1 cut(s) 1810
BsnI GGCC 9 cut(s) 24, 56, 176, 381, 450, 780, 1034, 1043, 1127
Bso31I GGTCTC 2 cut(s) 921, 1646
BsoBI CYCGRG 1 cut(s) 867
Bsp1286I GDGCHC 2 cut(s) 1147, 1641
Bsp13I TCCGGA 2 cut(s) 880, 1283
Bsp143I GATC 8 cut(s) 142, 712, 820, 1161, 1374, 1420, 1492, 1716
Bsp19I CCATGG 1 cut(s) 1358
BspANI GGCC 9 cut(s) 24, 56, 176, 381, 450, 780, 1034, 1043, 1127
BspCNI CTCAG 7 cut(s) 207, 927, 1049, 1408, 1726, 1746, 1754
BspEI TCCGGA 2 cut(s) 880, 1283
BspLI GGNNCC 6 cut(s) 6, 278, 668, 954, 997, 1710
BspMI ACCTGC 1 cut(s) 505
BspQI GCTCTTC 1 cut(s) 1347
BspT107I GGYRCC 4 cut(s) 666, 952, 995, 1708
BspTNI GGTCTC 2 cut(s) 921, 1646
BsrDI GCAATG 2 cut(s) 830, 846
BsrFI RCCGGY 4 cut(s) 52, 540, 930, 1753
BssAI RCCGGY 4 cut(s) 52, 540, 930, 1753
BssECI CCNNGG 3 cut(s) 171, 1358, 1772
BssMI GATC 8 cut(s) 142, 712, 820, 1161, 1374, 1420, 1492, 1716
BssNI GRCGYC 1 cut(s) 466
BssT1I CCWWGG 1 cut(s) 1358
Bst2UI CCWGG 5 cut(s) 172, 383, 782, 1235, 1773
Bst6I CTCTTC 4 cut(s) 152, 1077, 1211, 1347
BstACI GRCGYC 1 cut(s) 466
BstAPI GCANNNNNTGC 3 cut(s) 135, 550, 911
BstBAI YACGTR 1 cut(s) 227
BstC8I GCNNGC 3 cut(s) 307, 524, 542
BstDSI CCRYGG 1 cut(s) 1358
BstEII GGTNACC 1 cut(s) 34
BstF5I GGATG 7 cut(s) 565, 907, 949, 1114, 1192, 1458, 1470
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 2 cut(s) 74, 271
BstKTI GATC 8 cut(s) 145, 715, 823, 1164, 1377, 1423, 1495, 1719
BstMAI GTCTC 3 cut(s) 755, 921, 1646
BstMBI GATC 8 cut(s) 142, 712, 820, 1161, 1374, 1420, 1492, 1716
BstNI CCWGG 5 cut(s) 172, 383, 782, 1235, 1773
BstPI GGTNACC 1 cut(s) 34
BstSCI CCNGG 7 cut(s) 170, 381, 678, 780, 1118, 1233, 1771
BstV1I GCAGC 5 cut(s) 301, 629, 963, 985, 1855
BstV2I GAAGAC 1 cut(s) 8
Bsu36I CCTNAGG 1 cut(s) 555
BsuI GTATCC 1 cut(s) 888
BsuRI GGCC 9 cut(s) 24, 56, 176, 381, 450, 780, 1034, 1043, 1127
BtgI CCRYGG 1 cut(s) 1358
BtgZI GCGATG 1 cut(s) 656
BtrI CACGTC 3 cut(s) 388, 482, 1279
BtsCI GGATG 7 cut(s) 565, 907, 949, 1114, 1192, 1458, 1470
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 4 cut(s) 422, 1044, 1217, 1470
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 3 cut(s) 307, 524, 542
CfoI GCGC 2 cut(s) 74, 271
Cfr10I RCCGGY 4 cut(s) 52, 540, 930, 1753
Cfr13I GGNCC 4 cut(s) 23, 55, 174, 1231
CseI GACGC 2 cut(s) 306, 474
CsiI ACCWGGT 1 cut(s) 1233
Csp6I GTAC 3 cut(s) 224, 364, 667
CspAI ACCGGT 1 cut(s) 1753
CviAII CATG 7 cut(s) 698, 1045, 1157, 1291, 1359, 1570, 1861
CviQI GTAC 3 cut(s) 224, 364, 667
DpnI GATC 8 cut(s) 144, 714, 822, 1163, 1376, 1422, 1494, 1718
DpnII GATC 8 cut(s) 142, 712, 820, 1161, 1374, 1420, 1492, 1716
DriI GACNNNNNGTC 1 cut(s) 1744
EaeI YGGCCR 2 cut(s) 448, 1041
Eam1104I CTCTTC 4 cut(s) 152, 1077, 1211, 1347
Eam1105I GACNNNNNGTC 1 cut(s) 1744
EarI CTCTTC 4 cut(s) 152, 1077, 1211, 1347
EciI GGCGGA 1 cut(s) 596
Eco130I CCWWGG 1 cut(s) 1358
Eco147I AGGCCT 1 cut(s) 780
Eco24I GRGCYC 1 cut(s) 1641
Eco31I GGTCTC 2 cut(s) 921, 1646
Eco47I GGWCC 1 cut(s) 1231
Eco57I CTGAAG 1 cut(s) 1193
Eco81I CCTNAGG 1 cut(s) 555
Eco88I CYCGRG 1 cut(s) 867
Eco91I GGTNACC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 1231
EcoO65I GGTNACC 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 329
EcoRII CCWGG 5 cut(s) 170, 381, 780, 1233, 1771
EcoT14I CCWWGG 1 cut(s) 1358
EcoT38I GRGCYC 1 cut(s) 1641
ErhI CCWWGG 1 cut(s) 1358
FaeI CATG 7 cut(s) 701, 1048, 1160, 1294, 1362, 1573, 1864
FalI AAGNNNNNCTT 2 cut(s) 1805, 1837
FaqI GGGAC 3 cut(s) 32, 1312, 1751
FatI CATG 7 cut(s) 697, 1044, 1156, 1290, 1358, 1569, 1860
FbaI TGATCA 1 cut(s) 1374
FblI GTMKAC 1 cut(s) 1748
Fnu4HI GCNGC 9 cut(s) 267, 315, 579, 618, 786, 974, 977, 1137, 1869
FokI GGATG 7 cut(s) 572, 914, 956, 1121, 1199, 1465, 1477
FriOI GRGCYC 1 cut(s) 1641
Fsp4HI GCNGC 9 cut(s) 267, 315, 579, 618, 786, 974, 977, 1137, 1869
FspBI CTAG 3 cut(s) 12, 302, 374
GlaI GCGC 2 cut(s) 73, 270
GluI GCNGC 9 cut(s) 267, 315, 579, 618, 786, 974, 977, 1137, 1869
GsaI CCCAGC 1 cut(s) 1651
GsuI CTGGAG 1 cut(s) 647
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 9 cut(s) 24, 56, 176, 381, 450, 780, 1034, 1043, 1127
HgaI GACGC 2 cut(s) 306, 474
HhaI GCGC 2 cut(s) 74, 271
Hin1I GRCGYC 1 cut(s) 466
Hin1II CATG 7 cut(s) 701, 1048, 1160, 1294, 1362, 1573, 1864
Hin6I GCGC 2 cut(s) 72, 269
HinP1I GCGC 2 cut(s) 72, 269
HindIII AAGCTT 1 cut(s) 1049
HphI GGTGA 9 cut(s) 28, 281, 856, 1214, 1384, 1678, 1712, 1768, 1892
Hpy166II GTNNAC 1 cut(s) 1749
Hpy188III TCNNGA 8 cut(s) 118, 374, 754, 881, 1069, 1284, 1813, 1822
Hpy8I GTNNAC 1 cut(s) 1749
Hpy99I CGWCG 1 cut(s) 1421
HpyCH4IV ACGT 4 cut(s) 226, 387, 481, 1278
HpyCH4V TGCA 9 cut(s) 210, 309, 617, 662, 697, 905, 973, 1402, 1763
HpySE526I ACGT 4 cut(s) 226, 387, 481, 1278
Hsp92I GRCGYC 1 cut(s) 466
Hsp92II CATG 7 cut(s) 701, 1048, 1160, 1294, 1362, 1573, 1864
HspAI GCGC 2 cut(s) 72, 269
Kpn2I TCCGGA 2 cut(s) 880, 1283
KpnI GGTACC 1 cut(s) 670
KroI GCCGGC 1 cut(s) 540
KroNI GCCGGC 1 cut(s) 542
Ksp22I TGATCA 1 cut(s) 1374
Kzo9I GATC 8 cut(s) 142, 712, 820, 1161, 1374, 1420, 1492, 1716
LguI GCTCTTC 1 cut(s) 1347
LmnI GCTCC 5 cut(s) 10, 282, 1240, 1433, 1534
Lsp1109I GCAGC 5 cut(s) 301, 629, 963, 985, 1855
LweI GCATC 2 cut(s) 892, 1693
MabI ACCWGGT 1 cut(s) 1233
MaeI CTAG 3 cut(s) 12, 302, 374
MaeII ACGT 4 cut(s) 226, 387, 481, 1278
MaeIII GTNAC 5 cut(s) 34, 335, 674, 1274, 1756
MalI GATC 8 cut(s) 144, 714, 822, 1163, 1376, 1422, 1494, 1718
MboI GATC 8 cut(s) 142, 712, 820, 1161, 1374, 1420, 1492, 1716
MboII GAAGA 9 cut(s) 8, 139, 142, 643, 646, 804, 1094, 1228, 1364
MhlI GDGCHC 2 cut(s) 1147, 1641
MlsI TGGCCA 1 cut(s) 1043
MluCI AATT 8 cut(s) 100, 329, 497, 858, 872, 1258, 1343, 1842
MluNI TGGCCA 1 cut(s) 1043
MlyI GAGTC 4 cut(s) 59, 930, 1294, 1733
MmeI TCCRAC 1 cut(s) 1320
Mox20I TGGCCA 1 cut(s) 1043
MroI TCCGGA 2 cut(s) 880, 1283
MroNI GCCGGC 1 cut(s) 540
MroXI GAANNNNTTC 1 cut(s) 860
MscI TGGCCA 1 cut(s) 1043
MseI TTAA 1 cut(s) 1092
Msp20I TGGCCA 1 cut(s) 1043
MspA1I CMGCKG 1 cut(s) 976
MspR9I CCNGG 7 cut(s) 172, 383, 680, 782, 1120, 1235, 1773
Mva1269I GAATGC 1 cut(s) 1810
MvaI CCWGG 5 cut(s) 172, 383, 782, 1235, 1773
NaeI GCCGGC 1 cut(s) 542
NciI CCSGG 2 cut(s) 680, 1120
NcoI CCATGG 1 cut(s) 1358
NdeII GATC 8 cut(s) 142, 712, 820, 1161, 1374, 1420, 1492, 1716
NgoMIV GCCGGC 1 cut(s) 540
NlaIII CATG 7 cut(s) 701, 1048, 1160, 1294, 1362, 1573, 1864
NlaIV GGNNCC 6 cut(s) 6, 278, 668, 954, 997, 1710
NmeAIII GCCGAG 1 cut(s) 476
NmuCI GTSAC 4 cut(s) 34, 674, 1274, 1756
PceI AGGCCT 1 cut(s) 780
PciSI GCTCTTC 1 cut(s) 1347
PctI GAATGC 1 cut(s) 1810
PdiI GCCGGC 1 cut(s) 542
PdmI GAANNNNTTC 1 cut(s) 860
PfeI GAWTC 8 cut(s) 286, 358, 690, 809, 1015, 1408, 1498, 1729
Pfl23II CGTACG 1 cut(s) 223
PflMI CCANNNNNTGG 1 cut(s) 1005
PinAI ACCGGT 1 cut(s) 1753
PkrI GCNGC 9 cut(s) 268, 316, 580, 619, 787, 975, 978, 1138, 1870
PleI GAGTC 4 cut(s) 59, 929, 1294, 1733
PpsI GAGTC 4 cut(s) 59, 929, 1294, 1733
Ppu21I YACGTR 1 cut(s) 227
PpuMI RGGWCCY 1 cut(s) 1231
Psp5II RGGWCCY 1 cut(s) 1231
Psp6I CCWGG 5 cut(s) 170, 381, 780, 1233, 1771
PspEI GGTNACC 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 1647
PspGI CCWGG 5 cut(s) 170, 381, 780, 1233, 1771
PspLI CGTACG 1 cut(s) 223
PspN4I GGNNCC 6 cut(s) 6, 278, 668, 954, 997, 1710
PspPI GGNCC 4 cut(s) 23, 55, 174, 1231
PspPPI RGGWCCY 1 cut(s) 1231
PvuII CAGCTG 1 cut(s) 976
RsaI GTAC 3 cut(s) 225, 365, 668
RsaNI GTAC 3 cut(s) 224, 364, 667
SapI GCTCTTC 1 cut(s) 1347
SaqAI TTAA 1 cut(s) 1092
SatI GCNGC 9 cut(s) 267, 315, 579, 618, 786, 974, 977, 1137, 1869
Sau3AI GATC 8 cut(s) 142, 712, 820, 1161, 1374, 1420, 1492, 1716
Sau96I GGNCC 4 cut(s) 23, 55, 174, 1231
SchI GAGTC 4 cut(s) 59, 930, 1294, 1733
ScrFI CCNGG 7 cut(s) 172, 383, 680, 782, 1120, 1235, 1773
SduI GDGCHC 2 cut(s) 1147, 1641
SexAI ACCWGGT 1 cut(s) 1233
SfaNI GCATC 2 cut(s) 892, 1693
SfiI GGCCNNNNNGGCC 1 cut(s) 1040
SgrAI CRCCGGYG 1 cut(s) 1753
SinI GGWCC 1 cut(s) 1231
SmlI CTYRAG 2 cut(s) 752, 1811
SmoI CTYRAG 2 cut(s) 752, 1811
Sse9I AATT 8 cut(s) 100, 329, 497, 858, 872, 1258, 1343, 1842
SseBI AGGCCT 1 cut(s) 780
SspMI CTAG 3 cut(s) 12, 302, 374
StuI AGGCCT 1 cut(s) 780
StyD4I CCNGG 7 cut(s) 170, 381, 678, 780, 1118, 1233, 1771
StyI CCWWGG 1 cut(s) 1358
TaiI ACGT 4 cut(s) 229, 390, 484, 1281
TaqI TCGA 1 cut(s) 823
TaqII GACCGA 2 cut(s) 110, 1670
TasI AATT 8 cut(s) 100, 329, 497, 858, 872, 1258, 1343, 1842
TauI GCSGC 4 cut(s) 269, 581, 788, 1139
TfiI GAWTC 8 cut(s) 286, 358, 690, 809, 1015, 1408, 1498, 1729
Tru1I TTAA 1 cut(s) 1092
Tru9I TTAA 1 cut(s) 1092
TscAI CASTG 4 cut(s) 422, 1044, 1217, 1477
TseFI GTSAC 4 cut(s) 34, 674, 1274, 1756
TseI GCWGC 5 cut(s) 314, 617, 973, 976, 1868
Tsp45I GTSAC 4 cut(s) 34, 674, 1274, 1756
TspDTI ATGAA 4 cut(s) 903, 1061, 1095, 1481
TspGWI ACGGA 1 cut(s) 442
TspRI CASTG 4 cut(s) 422, 1044, 1217, 1477
Van91I CCANNNNNTGG 1 cut(s) 1005
VpaK11BI GGWCC 1 cut(s) 1231
XapI RAATTY 3 cut(s) 329, 858, 1842
XbaI TCTAGA 1 cut(s) 373
XmiI GTMKAC 1 cut(s) 1748
XmnI GAANNNNTTC 1 cut(s) 860
XspI CTAG 3 cut(s) 12, 302, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.