Rmu_sc0001689.1_g000017

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001689.1
OG0000255
Physical Location & Seq
Forward (+)
98982 .. 99368
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001689.1_g000017.1.cds

Sequence Viewer

Length: 387 bp
atggtcgccgatttcaacaacctcaacaagccaaccccgaaaccccaaatgggcttcaccgagaaaaactttaccacattcctctcatccggcaacccttgcctcgatctcttcttccatgtggtatcaaactctccggcatcctatccccaccaacagctccctttcacttgggcccacgatgccctaaccaccctcaagcttatctgtaaccttcgcagcttacacggcaccaaaaagtctgacaaagaagggttctacacagcattgctctggctccacaagcaccacccaaaaaccctagcttgcaatgccgaccttagaggtggtgttgttgtagacggggaggttctgggccgagggaaaaaaggctatatgtgtttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

128

Amino Acids

14.27

Weight (kDa)

9.14

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AccI GTMKAC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 4 cut(s) 160, 202, 222, 305
AluI AGCT 4 cut(s) 160, 202, 222, 305
AoxI GGCC 2 cut(s) 174, 355
ApaI GGGCCC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 219
AspS9I GGNCC 3 cut(s) 174, 175, 355
AsuHPI GGTGA 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 178
BanI GGYRCC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 244
BfaI CTAG 1 cut(s) 302
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 174, 175, 355
BmiI GGNNCC 3 cut(s) 176, 232, 278
BmsI GCATC 2 cut(s) 149, 172
BpuEI CTTGAG 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse3DI GCAATG 2 cut(s) 266, 316
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 2 cut(s) 86, 140
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 2 cut(s) 266, 316
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 1 cut(s) 231
BshFI GGCC 2 cut(s) 176, 357
BshNI GGYRCC 1 cut(s) 230
BsiSI CCGG 2 cut(s) 90, 137
BslI CCNNNNNNNGG 1 cut(s) 50
BsnI GGCC 2 cut(s) 176, 357
Bsp120I GGGCCC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 106
BspANI GGCC 2 cut(s) 176, 357
BspLI GGNNCC 3 cut(s) 176, 232, 278
BspT107I GGYRCC 1 cut(s) 230
BsrDI GCAATG 2 cut(s) 266, 316
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 320
BstF5I GGATG 2 cut(s) 86, 140
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 5 cut(s) 99, 182, 228, 283, 311
BstSLI GKGCMC 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 231
BsuRI GGCC 2 cut(s) 176, 357
BtsCI GGATG 2 cut(s) 86, 140
Cac8I GCNNGC 1 cut(s) 307
Cfr13I GGNCC 3 cut(s) 174, 175, 355
CviAII CATG 1 cut(s) 119
DdeI CTNAG 1 cut(s) 320
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 178
FaeI CATG 1 cut(s) 122
FaiI YATR 3 cut(s) 120, 375, 377
FatI CATG 1 cut(s) 118
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 2 cut(s) 73, 127
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 1 cut(s) 302
GluI GCNGC 1 cut(s) 220
HaeIII GGCC 2 cut(s) 176, 357
HapII CCGG 2 cut(s) 90, 137
Hin1II CATG 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 200
HpaII CCGG 2 cut(s) 90, 137
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 340
HpyAV CCTTC 2 cut(s) 224, 245
HpyCH4V TGCA 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 182, 228, 283, 311
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 1 cut(s) 122
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 2 cut(s) 165, 282
LpnPI CCDG 4 cut(s) 103, 150, 259, 338
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 2 cut(s) 149, 172
MaeI CTAG 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 2 cut(s) 103, 106
MhlI GDGCHC 1 cut(s) 178
MnlI CCTC 7 cut(s) 32, 92, 113, 206, 317, 340, 353
MspI CCGG 2 cut(s) 90, 137
MwoI GCNNNNNNNGC 5 cut(s) 99, 182, 228, 283, 311
NdeII GATC 1 cut(s) 106
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 3 cut(s) 176, 232, 278
NmeAIII GCCGAG 1 cut(s) 383
PkrI GCNGC 1 cut(s) 221
PspN4I GGNNCC 3 cut(s) 176, 232, 278
PspOMI GGGCCC 1 cut(s) 174
PspPI GGNCC 3 cut(s) 174, 175, 355
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 3 cut(s) 174, 175, 355
SduI GDGCHC 1 cut(s) 178
SetI ASST 9 cut(s) 24, 162, 204, 216, 224, 307, 321, 328, 351
SfaNI GCATC 2 cut(s) 149, 172
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SspMI CTAG 1 cut(s) 302
TaqI TCGA 1 cut(s) 105
TseI GCWGC 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 339
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.