MD13G1126800.v1.1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000255
Physical Location & Seq
Forward (+)
9497662 .. 9499644
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1126800.v1.1.491

Sequence Viewer

Length: 1983 bp
ATGGCTCCCTCGACTCTTCTCGGCCCTCCAGAGTTCAGCAAACCTGCACAGACCACCCCACCGTCTCAACCCGAACCCAAATGCGAGCCCAAACCCGCAACTGGCGAACCCTTCGTCGACCTTATGGTCTCCAGTTTCAACAACATATCGATGGAAAAGAAGCCCCCGATGGGCTTGACGGAGAACAACTCCGCCACCTACCTCTCCACCGGCAACCCCTGCCTCGATCTCTTTTTCCACGTGGTGCCGGACACCCCCGCCGATTACCTGAACGAGCAGCTCCCGCTGGCCTGGGCCCATAACGCGCTGACCACGCTCAAGTTGATTTGCAACCTCCGAGGCGTGCGCGGGACGGGGAAGTCCGACAAGGAGAACTTCCACACGGCGGCGTTTTGGCTCCACGAGCACCACCCCAAAACCCTCGCGTGCAATTTGCAAACGTTTGCGGAGTTCGGCTATTTCAAGGACCTACCGGAGATTCTCTACCGGCTTCTGGAAGGCGAGGACGTGCGGAGGAACCAGAGGGAGGAGTGGAAGAACCGAAAATCCAGCGGTGGCAAGAAAAGGTGGAATTCGGGTCGGGATCTCGGACCCGAACAACCGATCCCGTTCAAAAAAATCGGGGCGGAAAGAGAGAAGAAGGCCGGCAAAAAGAAGGAGATGACGGAAGAAGAAAAGGAAGCGAAGGAAGCGAAGGCGAGGGAGTGGGAAAAGTCGGAAAAGGAAAAGGCGAGCAGGCTGAGGAAGGAGAAGAAGATCGCCATGGCCAAGAAGGCGGTGGCCCGGTACGAGCACGATGCGGATTTCCGGTTCCTGCATGAGCGGGTTTCGGATATCTTTGCCGAGTTCTTGAAGGCCGATATGGAGAATTTGAAGTCGAATCAGAGCAACAAGATCAGCCTCGCGGCAAAGTGGTGCCCTTCGATCGACTCCTCGTTCGATCAGGCCACTCTGATCTGCGAGAGCATCGCGAGGAAGGTGTTCCCGCGCGAATCGTACAAGGAATACGACGGCGTTGAAGAAGCCCATTACGCGTACAAAGTGAGGGACCGGCTGAGGAAGGAAGTGCTGGTGCCGCTGAGGAAGGTTCTTGAGCTGCCGGAGGTGTACATTGGGGTCAACCAGTGGGGTTCGATTCCGTACAACAGGGTGGCTTCCGTGGCGATGAAGAATTACAAGGAGTTCTTCTTGAAGCACGACGAGGAGAGGTTCAAAAAGTACTTGGAGGACGTGAAGGCGGGCAAGGCGAAGATTGCTGCCGGAGCTCTGCTGCCCCATGAGATTATTGGGTCTCTGGAGGACGGCGATGTTGGGCAGGTGGCGGAGCTTCAGTGGAAGAGGATGGTGGAGGATATGTTGAAGTTGGGGAAGATGAAGAACTGCTTGGCTGTGTGTGACGTGTCTATGAGCATGTCAGGGACTCCAATGGAGGTGTCGGTGGCGTTGGGGCTGCTGGTGTCCGAGCTGAGTGAGGACCCGTGGAAAGGGCTGGTGATCACTTTCAGTGAGAATCCTCAGCTGCATTTGGTGAAAGGGGACGATCTGATGACCAAGTGCCAGTTTGTGAGGAGGATGGATTGGGGTGGGAACACTGATTTCCAGAAGGTGTTTGATTTGCTGCTGAAAGTTGCGGTGAAAGGGAAATTGAAACCGGAGAATATGATAAAGAGGATTTTTGTGTTTAGTGACATGGAGTTTGATCAGGCTTCGGCCAACTGCTGGGAGACGGATTATGAGGTGATACAAAACAAATATAGGAAGAGCGGGTATGGGGATGCGATCCCGCAGCTGGTGTTTTGGAATCTGAGGGACTCGAGGTCTACACCGGTGCCTGGGAATCAGCCTGGGGTGGCTTTGCTGAGTGGCTTCTCTAAGAATCTGCTGAAGCTGTTCATGGACAATGATGGGGACCTTCAACCGGATGTTTTCATGGAATTAGCCATCTCGGGAGAAGAGTATCAGAAGCTAGTTGTGCACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

661

Amino Acids

75.14

Weight (kDa)

7.19

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 60 - 458 2.5e-137 Domain of unknown function (DUF2828)
DUF7788 PF25043 460 - 638 4.2e-77 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1306
AasI GACNNNNNNGTC 2 cut(s) 125, 358
Acc36I ACCTGC 2 cut(s) 52, 1306
AccB1I GGYRCC 4 cut(s) 244, 915, 1072, 1828
AccB7I CCANNNNNTGG 1 cut(s) 1719
AccBSI CCGCTC 2 cut(s) 823, 1764
AccI GTMKAC 2 cut(s) 117, 1820
AccII CGCG 8 cut(s) 305, 348, 425, 905, 971, 988, 990, 1034
AclI AACGTT 1 cut(s) 440
AclWI GGATC 3 cut(s) 591, 598, 1774
AcoI YGGCCR 2 cut(s) 765, 1710
AcsI RAATTY 2 cut(s) 571, 868
AcuI CTGAAG 2 cut(s) 1313, 1904
AcvI CACGTG 1 cut(s) 241
AdeI CACNNNGTG 1 cut(s) 244
AfaI GTAC 6 cut(s) 788, 998, 1037, 1109, 1142, 1220
AflIII ACRYGT 2 cut(s) 1032, 1398
AgeI ACCGGT 1 cut(s) 1825
AhdI GACNNNNNGTC 1 cut(s) 1816
AjiI CACGTC 3 cut(s) 508, 1231, 1399
AjnI CCWGG 3 cut(s) 290, 1831, 1843
AjuI GAANNNNNNNTTGG 2 cut(s) 1367, 1399
AloI GAACNNNNNNTCC 6 cut(s) 530, 562, 588, 620, 794, 826
AluBI AGCT 9 cut(s) 280, 1096, 1265, 1327, 1465, 1519, 1789, 1888, 1966
AluI AGCT 9 cut(s) 280, 1096, 1265, 1327, 1465, 1519, 1789, 1888, 1966
Alw21I GWGCWC 4 cut(s) 408, 795, 1267, 1977
Alw26I GTCTC 4 cut(s) 69, 133, 1296, 1718
Alw44I GTGCAC 1 cut(s) 1973
AlwI GGATC 3 cut(s) 591, 598, 1774
Ama87I CYCGRG 2 cut(s) 1813, 1945
AoxI GGCC 9 cut(s) 22, 288, 294, 642, 765, 780, 855, 945, 1710
ApaI GGGCCC 1 cut(s) 298
ApaLI GTGCAC 1 cut(s) 1973
ApeKI GCWGC 8 cut(s) 277, 1096, 1256, 1270, 1450, 1519, 1618, 1786
ApoI RAATTY 2 cut(s) 571, 868
ArsI GACNNNNNNTTYG 6 cut(s) 99, 131, 920, 952, 1679, 1711
AsiGI ACCGGT 1 cut(s) 1825
Asp700I GAANNNNTTC 2 cut(s) 980, 1889
AspLEI GCGC 3 cut(s) 307, 348, 990
AspS9I GGNCC 9 cut(s) 23, 294, 295, 466, 590, 781, 1048, 1474, 1909
AsuC2I CCSGG 1 cut(s) 784
AsuHPI GGTGA 4 cut(s) 1504, 1540, 1645, 1750
AvaI CYCGRG 2 cut(s) 1813, 1945
AvaII GGWCC 5 cut(s) 466, 590, 1048, 1474, 1909
BaeGI GKGCMC 3 cut(s) 298, 920, 1977
BalI TGGCCA 1 cut(s) 767
BanI GGYRCC 4 cut(s) 244, 915, 1072, 1828
BanII GRGCYC 3 cut(s) 90, 298, 1267
BauI CACGAG 1 cut(s) 401
BbrPI CACGTG 1 cut(s) 241
Bbv12I GWGCWC 4 cut(s) 408, 795, 1267, 1977
BbvCI CCTCAGC 4 cut(s) 740, 1055, 1079, 1515
BbvI GCAGC 8 cut(s) 289, 1083, 1243, 1257, 1437, 1506, 1605, 1798
BccI CCATC 6 cut(s) 145, 163, 1336, 1567, 1898, 1949
BceAI ACGGC 3 cut(s) 399, 1027, 1318
BcgI CGANNNNNNTGC 2 cut(s) 779, 813
BciT130I CCWGG 3 cut(s) 292, 1833, 1845
BclI TGATCA 2 cut(s) 1494, 1699
BcnI CCSGG 1 cut(s) 784
BcoDI GTCTC 4 cut(s) 69, 133, 1296, 1718
BfaI CTAG 1 cut(s) 1967
BfuAI ACCTGC 2 cut(s) 52, 1306
BglI GCCNNNNNGGC 1 cut(s) 773
BmcAI AGTACT 1 cut(s) 1220
Bme1390I CCNGG 4 cut(s) 292, 784, 1833, 1845
Bme18I GGWCC 5 cut(s) 466, 590, 1048, 1474, 1909
BmeRI GACNNNNNGTC 1 cut(s) 1816
BmeT110I CYCGRG 2 cut(s) 1813, 1945
BmgBI CACGTC 3 cut(s) 508, 1231, 1399
BmgT120I GGNCC 9 cut(s) 23, 294, 295, 466, 590, 781, 1048, 1474, 1909
BmrFI CCNGG 4 cut(s) 292, 784, 1833, 1845
BmsI GCATC 3 cut(s) 787, 975, 1765
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpmI CTGGAG 3 cut(s) 12, 115, 1316
Bpu10I CCTNAGC 4 cut(s) 740, 1055, 1079, 1515
BpuEI CTTGAG 2 cut(s) 302, 1112
BpuMI CCSGG 1 cut(s) 784
Bsa29I ATCGAT 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 241
BsaI GGTCTC 2 cut(s) 133, 1296
BsaJI CCNNGG 7 cut(s) 291, 337, 762, 1158, 1478, 1832, 1844
BsaWI WCCGGW 5 cut(s) 472, 807, 1651, 1825, 1918
BsaXI ACNNNNNCTCC 4 cut(s) 1316, 1340, 1346, 1370
Bse118I RCCGGY 5 cut(s) 209, 486, 644, 1050, 1825
Bse1I ACTGG 4 cut(s) 106, 132, 1123, 1558
BseBI CCWGG 3 cut(s) 292, 1833, 1845
BseCI ATCGAT 1 cut(s) 149
BseDI CCNNGG 7 cut(s) 291, 337, 762, 1158, 1478, 1832, 1844
BseGI GGATG 4 cut(s) 1347, 1578, 1780, 1927
BseMII CTCAG 7 cut(s) 731, 1046, 1070, 1457, 1529, 1796, 1850
BseNI ACTGG 4 cut(s) 106, 132, 1123, 1558
BseRI GAGGAG 4 cut(s) 542, 922, 1217, 1582
BseSI GKGCMC 3 cut(s) 298, 920, 1977
BseXI GCAGC 8 cut(s) 289, 1083, 1243, 1257, 1437, 1506, 1605, 1798
BseYI CCCAGC 1 cut(s) 1719
BsgI GTGCAG 1 cut(s) 30
Bsh1236I CGCG 8 cut(s) 305, 348, 425, 905, 971, 988, 990, 1034
Bsh1285I CGRYCG 1 cut(s) 927
BshFI GGCC 9 cut(s) 24, 290, 296, 644, 767, 782, 857, 947, 1712
BshNI GGYRCC 4 cut(s) 244, 915, 1072, 1828
BshTI ACCGGT 1 cut(s) 1825
BshVI ATCGAT 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 927
BsiHKAI GWGCWC 4 cut(s) 408, 795, 1267, 1977
BsiHKCI CYCGRG 2 cut(s) 1813, 1945
BslFI GGGAC 6 cut(s) 364, 1061, 1432, 1550, 1823, 1922
BsmAI GTCTC 4 cut(s) 69, 133, 1296, 1718
BsmBI CGTCTC 2 cut(s) 69, 1718
BsmFI GGGAC 6 cut(s) 364, 1061, 1432, 1550, 1823, 1922
BsnI GGCC 9 cut(s) 24, 290, 296, 644, 767, 782, 857, 947, 1712
Bso31I GGTCTC 2 cut(s) 133, 1296
BsoBI CYCGRG 2 cut(s) 1813, 1945
Bsp120I GGGCCC 1 cut(s) 294
Bsp1286I GDGCHC 7 cut(s) 90, 298, 408, 795, 920, 1267, 1977
Bsp1407I TGTACA 1 cut(s) 1107
Bsp19I CCATGG 1 cut(s) 762
Bsp68I TCGCGA 1 cut(s) 971
BspANI GGCC 9 cut(s) 24, 290, 296, 644, 767, 782, 857, 947, 1712
BspCNI CTCAG 7 cut(s) 732, 1047, 1071, 1458, 1528, 1797, 1851
BspDI ATCGAT 1 cut(s) 149
BspFNI CGCG 8 cut(s) 305, 348, 425, 905, 971, 988, 990, 1034
BspMI ACCTGC 2 cut(s) 52, 1306
BspPI GGATC 3 cut(s) 591, 598, 1774
BspQI GCTCTTC 1 cut(s) 1754
BspT107I GGYRCC 4 cut(s) 244, 915, 1072, 1828
BspTNI GGTCTC 2 cut(s) 133, 1296
BsrBI CCGCTC 2 cut(s) 823, 1764
BsrFI RCCGGY 5 cut(s) 209, 486, 644, 1050, 1825
BsrGI TGTACA 1 cut(s) 1107
BsrI ACTGG 4 cut(s) 106, 132, 1123, 1558
BssAI RCCGGY 5 cut(s) 209, 486, 644, 1050, 1825
BssECI CCNNGG 7 cut(s) 291, 337, 762, 1158, 1478, 1832, 1844
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 1 cut(s) 762
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 3 cut(s) 292, 1833, 1845
Bst4CI ACNGT 1 cut(s) 63
Bst6I CTCTTC 4 cut(s) 21, 1331, 1754, 1947
BstAPI GCANNNNNTGC 1 cut(s) 219
BstAUI TGTACA 1 cut(s) 1107
BstBAI YACGTR 1 cut(s) 241
BstC8I GCNNGC 8 cut(s) 86, 288, 344, 427, 646, 733, 737, 1240
BstDEI CTNAG 8 cut(s) 740, 1055, 1079, 1466, 1515, 1805, 1859, 1872
BstDSI CCRYGG 3 cut(s) 762, 1158, 1478
BstF5I GGATG 4 cut(s) 1347, 1578, 1780, 1927
BstFNI CGCG 8 cut(s) 305, 348, 425, 905, 971, 988, 990, 1034
BstHHI GCGC 3 cut(s) 307, 348, 990
BstMAI GTCTC 4 cut(s) 69, 133, 1296, 1718
BstMCI CGRYCG 1 cut(s) 927
BstNI CCWGG 3 cut(s) 292, 1833, 1845
BstNSI RCATGY 1 cut(s) 1414
BstSCI CCNGG 4 cut(s) 290, 782, 1831, 1843
BstSLI GKGCMC 3 cut(s) 298, 920, 1977
BstUI CGCG 8 cut(s) 305, 348, 425, 905, 971, 988, 990, 1034
BstV1I GCAGC 8 cut(s) 289, 1083, 1243, 1257, 1437, 1506, 1605, 1798
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
Bsu15I ATCGAT 1 cut(s) 149
BsuRI GGCC 9 cut(s) 24, 290, 296, 644, 767, 782, 857, 947, 1712
BsuTUI ATCGAT 1 cut(s) 149
BtgI CCRYGG 3 cut(s) 762, 1158, 1478
BtgZI GCGATG 3 cut(s) 952, 1178, 1320
BtrI CACGTC 3 cut(s) 508, 1231, 1399
BtsCI GGATG 4 cut(s) 1347, 1578, 1780, 1927
BtsIMutI CAGTG 4 cut(s) 1130, 1337, 1510, 1590
BtuMI TCGCGA 1 cut(s) 971
BveI ACCTGC 2 cut(s) 52, 1306
Cac8I GCNNGC 8 cut(s) 86, 288, 344, 427, 646, 733, 737, 1240
CfoI GCGC 3 cut(s) 307, 348, 990
Cfr10I RCCGGY 5 cut(s) 209, 486, 644, 1050, 1825
Cfr13I GGNCC 9 cut(s) 23, 294, 295, 466, 590, 781, 1048, 1474, 1909
ClaI ATCGAT 1 cut(s) 149
Csp6I GTAC 6 cut(s) 787, 997, 1036, 1108, 1141, 1219
CspAI ACCGGT 1 cut(s) 1825
CviAII CATG 7 cut(s) 763, 818, 1277, 1411, 1690, 1894, 1930
CviQI GTAC 6 cut(s) 787, 997, 1036, 1108, 1141, 1219
DdeI CTNAG 8 cut(s) 740, 1055, 1079, 1466, 1515, 1805, 1859, 1872
DraIII CACNNNGTG 1 cut(s) 244
DrdI GACNNNNNNGTC 2 cut(s) 125, 358
DriI GACNNNNNGTC 1 cut(s) 1816
DseDI GACNNNNNNGTC 2 cut(s) 125, 358
EaeI YGGCCR 2 cut(s) 765, 1710
Eam1104I CTCTTC 4 cut(s) 21, 1331, 1754, 1947
Eam1105I GACNNNNNGTC 1 cut(s) 1816
EarI CTCTTC 4 cut(s) 21, 1331, 1754, 1947
EciI GGCGGA 3 cut(s) 181, 641, 1337
Ecl136II GAGCTC 1 cut(s) 1265
Eco130I CCWWGG 1 cut(s) 762
Eco24I GRGCYC 3 cut(s) 90, 298, 1267
Eco31I GGTCTC 2 cut(s) 133, 1296
Eco32I GATATC 1 cut(s) 835
Eco47I GGWCC 5 cut(s) 466, 590, 1048, 1474, 1909
Eco53kI GAGCTC 1 cut(s) 1265
Eco57I CTGAAG 2 cut(s) 1313, 1904
Eco72I CACGTG 1 cut(s) 241
Eco88I CYCGRG 2 cut(s) 1813, 1945
EcoICRI GAGCTC 1 cut(s) 1265
EcoO109I RGGNCCY 3 cut(s) 466, 1474, 1909
EcoRI GAATTC 1 cut(s) 571
EcoRII CCWGG 3 cut(s) 290, 1831, 1843
EcoRV GATATC 1 cut(s) 835
EcoT14I CCWWGG 1 cut(s) 762
EcoT38I GRGCYC 3 cut(s) 90, 298, 1267
ErhI CCWWGG 1 cut(s) 762
Esp3I CGTCTC 2 cut(s) 69, 1718
FaeI CATG 7 cut(s) 766, 821, 1280, 1414, 1693, 1897, 1933
FalI AAGNNNNNCTT 6 cut(s) 359, 391, 1169, 1201, 1367, 1399
FaqI GGGAC 6 cut(s) 364, 1061, 1432, 1550, 1823, 1922
FatI CATG 7 cut(s) 762, 817, 1276, 1410, 1689, 1893, 1929
FauI CCCGC 9 cut(s) 103, 265, 291, 341, 816, 993, 1231, 1757, 1791
FbaI TGATCA 2 cut(s) 1494, 1699
FblI GTMKAC 2 cut(s) 117, 1820
FokI GGATG 4 cut(s) 1354, 1585, 1787, 1934
FriOI GRGCYC 3 cut(s) 90, 298, 1267
FspBI CTAG 1 cut(s) 1967
GlaI GCGC 3 cut(s) 306, 347, 989
GsaI CCCAGC 1 cut(s) 1723
GsuI CTGGAG 3 cut(s) 12, 115, 1316
HaeIII GGCC 9 cut(s) 24, 290, 296, 644, 767, 782, 857, 947, 1712
HhaI GCGC 3 cut(s) 307, 348, 990
Hin1II CATG 7 cut(s) 766, 821, 1280, 1414, 1693, 1897, 1933
Hin6I GCGC 3 cut(s) 305, 346, 988
HinP1I GCGC 3 cut(s) 305, 346, 988
HincII GTYRAC 2 cut(s) 118, 1120
HindII GTYRAC 2 cut(s) 118, 1120
HphI GGTGA 4 cut(s) 1504, 1540, 1645, 1750
Hpy166II GTNNAC 5 cut(s) 118, 1108, 1120, 1821, 1975
Hpy8I GTNNAC 5 cut(s) 118, 1108, 1120, 1821, 1975
Hpy99I CGWCG 3 cut(s) 119, 1013, 1202
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4IV ACGT 5 cut(s) 240, 440, 507, 1230, 1398
HpyCH4V TGCA 7 cut(s) 47, 330, 429, 436, 817, 1522, 1975
HpyF3I CTNAG 8 cut(s) 740, 1055, 1079, 1466, 1515, 1805, 1859, 1872
HpySE526I ACGT 5 cut(s) 240, 440, 507, 1230, 1398
Hsp92II CATG 7 cut(s) 766, 821, 1280, 1414, 1693, 1897, 1933
HspAI GCGC 3 cut(s) 305, 346, 988
KroI GCCGGC 1 cut(s) 644
KroNI GCCGGC 1 cut(s) 646
Ksp22I TGATCA 2 cut(s) 1494, 1699
LguI GCTCTTC 1 cut(s) 1754
LmnI GCTCC 5 cut(s) 10, 285, 402, 1262, 1324
Lsp1109I GCAGC 8 cut(s) 289, 1083, 1243, 1257, 1437, 1506, 1605, 1798
LweI GCATC 3 cut(s) 787, 975, 1765
MaeI CTAG 1 cut(s) 1967
MaeII ACGT 5 cut(s) 240, 440, 507, 1230, 1398
MaeIII GTNAC 2 cut(s) 1394, 1685
MbiI CCGCTC 2 cut(s) 823, 1764
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 7 cut(s) 90, 298, 408, 795, 920, 1267, 1977
MlsI TGGCCA 1 cut(s) 767
MluCI AATT 6 cut(s) 430, 571, 868, 1171, 1643, 1934
MluI ACGCGT 1 cut(s) 1032
MluNI TGGCCA 1 cut(s) 767
MlyI GAGTC 4 cut(s) 7, 923, 1414, 1805
MmeI TCCRAC 2 cut(s) 387, 696
Mox20I TGGCCA 1 cut(s) 767
MroNI GCCGGC 1 cut(s) 644
MroXI GAANNNNTTC 2 cut(s) 980, 1889
MscI TGGCCA 1 cut(s) 767
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 767
MspA1I CMGCKG 5 cut(s) 286, 552, 1078, 1519, 1789
MspR9I CCNGG 4 cut(s) 292, 784, 1833, 1845
MvaI CCWGG 3 cut(s) 292, 1833, 1845
MvnI CGCG 8 cut(s) 305, 348, 425, 905, 971, 988, 990, 1034
NaeI GCCGGC 1 cut(s) 646
NciI CCSGG 1 cut(s) 784
NcoI CCATGG 1 cut(s) 762
NgoMIV GCCGGC 1 cut(s) 644
NlaIII CATG 7 cut(s) 766, 821, 1280, 1414, 1693, 1897, 1933
NmeAIII GCCGAG 1 cut(s) 868
NmuCI GTSAC 2 cut(s) 1394, 1685
NruI TCGCGA 1 cut(s) 971
NspI RCATGY 1 cut(s) 1414
PaeR7I CTCGAG 1 cut(s) 1813
PaqCI CACCTGC 1 cut(s) 1306
PciSI GCTCTTC 1 cut(s) 1754
PdiI GCCGGC 1 cut(s) 646
PdmI GAANNNNTTC 2 cut(s) 980, 1889
PfeI GAWTC 8 cut(s) 478, 880, 992, 1135, 1510, 1801, 1837, 1876
PflMI CCANNNNNTGG 1 cut(s) 1719
PinAI ACCGGT 1 cut(s) 1825
Ple19I CGATCG 1 cut(s) 927
PleI GAGTC 4 cut(s) 7, 923, 1414, 1805
PmaCI CACGTG 1 cut(s) 241
PmlI CACGTG 1 cut(s) 241
PpsI GAGTC 4 cut(s) 7, 923, 1414, 1805
Ppu21I YACGTR 1 cut(s) 241
PpuMI RGGWCCY 3 cut(s) 466, 1474, 1909
Psp124BI GAGCTC 1 cut(s) 1267
Psp1406I AACGTT 1 cut(s) 440
Psp5II RGGWCCY 3 cut(s) 466, 1474, 1909
Psp6I CCWGG 3 cut(s) 290, 1831, 1843
PspCI CACGTG 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 1719
PspGI CCWGG 3 cut(s) 290, 1831, 1843
PspOMI GGGCCC 1 cut(s) 294
PspPI GGNCC 9 cut(s) 23, 294, 295, 466, 590, 781, 1048, 1474, 1909
PspPPI RGGWCCY 3 cut(s) 466, 1474, 1909
PspXI VCTCGAGB 1 cut(s) 1813
PsuI RGATCY 1 cut(s) 583
PvuI CGATCG 1 cut(s) 927
PvuII CAGCTG 2 cut(s) 1519, 1789
RruI TCGCGA 1 cut(s) 971
RsaI GTAC 6 cut(s) 788, 998, 1037, 1109, 1142, 1220
RsaNI GTAC 6 cut(s) 787, 997, 1036, 1108, 1141, 1219
RseI CAYNNNNRTG 1 cut(s) 149
SacI GAGCTC 1 cut(s) 1267
SalI GTCGAC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 1754
Sau96I GGNCC 9 cut(s) 23, 294, 295, 466, 590, 781, 1048, 1474, 1909
ScaI AGTACT 1 cut(s) 1220
SchI GAGTC 4 cut(s) 7, 923, 1414, 1805
ScrFI CCNGG 4 cut(s) 292, 784, 1833, 1845
SduI GDGCHC 7 cut(s) 90, 298, 408, 795, 920, 1267, 1977
SfaNI GCATC 3 cut(s) 787, 975, 1765
Sfr274I CTCGAG 1 cut(s) 1813
SgrAI CRCCGGYG 1 cut(s) 1825
SinI GGWCC 5 cut(s) 466, 590, 1048, 1474, 1909
SlaI CTCGAG 1 cut(s) 1813
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 3 cut(s) 317, 1091, 1813
SmoI CTYRAG 3 cut(s) 317, 1091, 1813
Sse9I AATT 6 cut(s) 430, 571, 868, 1171, 1643, 1934
SspMI CTAG 1 cut(s) 1967
SstI GAGCTC 1 cut(s) 1267
StyD4I CCNGG 4 cut(s) 290, 782, 1831, 1843
StyI CCWWGG 1 cut(s) 762
TaaI ACNGT 1 cut(s) 63
TaiI ACGT 5 cut(s) 243, 443, 510, 1233, 1401
TasI AATT 6 cut(s) 430, 571, 868, 1171, 1643, 1934
TatI WGTACW 2 cut(s) 1107, 1218
TauI GCSGC 3 cut(s) 389, 908, 1078
TfiI GAWTC 8 cut(s) 478, 880, 992, 1135, 1510, 1801, 1837, 1876
TscAI CASTG 4 cut(s) 1130, 1337, 1510, 1597
TseFI GTSAC 2 cut(s) 1394, 1685
TseI GCWGC 8 cut(s) 277, 1096, 1256, 1270, 1450, 1519, 1618, 1786
Tsp45I GTSAC 2 cut(s) 1394, 1685
TspDTI ATGAA 4 cut(s) 1181, 1388, 1882, 1918
TspGWI ACGGA 5 cut(s) 194, 680, 1128, 1147, 1742
TspRI CASTG 4 cut(s) 1130, 1337, 1510, 1597
Van91I CCANNNNNTGG 1 cut(s) 1719
VneI GTGCAC 1 cut(s) 1973
VpaK11BI GGWCC 5 cut(s) 466, 590, 1048, 1474, 1909
XapI RAATTY 2 cut(s) 571, 868
XceI RCATGY 1 cut(s) 1414
XcmI CCANNNNNNNNNTGG 2 cut(s) 775, 1283
XhoI CTCGAG 1 cut(s) 1813
XmiI GTMKAC 2 cut(s) 117, 1820
XmnI GAANNNNTTC 2 cut(s) 980, 1889
XspI CTAG 1 cut(s) 1967
ZrmI AGTACT 1 cut(s) 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.