Rorug06G0465800

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000255
Physical Location & Seq
Reverse (-)
59032522 .. 59034113
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0465800.1

Sequence Viewer

Length: 339 bp
ATGGAGGGGAAAAGCAGAGACGCGGCGGTGCCGCCGAGGTTGTTTGTGAAGGGAAGATATGTGGGTGGATCCGAGGAGGTGTTGAAGATTGTGGAGGAGGGGTTGTTGGGGGAGATTCTAGAAGGTCTGCCCAAGAAGCGGGCCGGGTCGGTTTGCGAAGGGTGCGGAGAAGCGAAATTCTTGCCGTGTTTTCAGTGCAATGGGAGTTCAAAGATGGTGCTGGTGGTGAAAGAAGACGAGGTGGTGGTGGGGCAGAGGCAGGGAGGTGGCGGCACGGTGGTCGTGAGGTGTCCCGAGTGTAATGAGAATGGGTTGGTGCTCTGCCCAATTTGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

112

Amino Acids

11.83

Weight (kDa)

5.55

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRXCR1-2_C PF23733 52 - 112 1.6e-17 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AccII CGCG 1 cut(s) 23
AciI CCGC 6 cut(s) 23, 26, 32, 139, 165, 270
AclWI GGATC 2 cut(s) 63, 76
AcsI RAATTY 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 2 cut(s) 85, 210
AluBI AGCT 1 cut(s) 336
AluI AGCT 1 cut(s) 336
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 2 cut(s) 63, 76
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 1 cut(s) 141
ApoI RAATTY 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 293
BamHI GGATCC 1 cut(s) 68
BanI GGYRCC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 321
BccI CCATC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 169
BcgI CGANNNNNNTGC 4 cut(s) 163, 197, 262, 296
BcnI CCSGG 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 1 cut(s) 119
BisI GCNGC 3 cut(s) 24, 32, 271
BlsI GCNGC 3 cut(s) 25, 33, 272
Bme1390I CCNGG 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 2 cut(s) 30, 70
BmrFI CCNGG 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 35, 72
BsaXI ACNNNNNCTCC 4 cut(s) 86, 89, 116, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 35, 72
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 205
BseRI GAGGAG 2 cut(s) 89, 110
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 12
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 1 cut(s) 68
BspACI CCGC 6 cut(s) 23, 26, 32, 139, 165, 270
BspANI GGCC 1 cut(s) 143
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 30, 70
BspPI GGATC 2 cut(s) 63, 76
BspT107I GGYRCC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 35, 72
BssMI GATC 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 141
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 68
BstMWI GCNNNNNNNGC 2 cut(s) 136, 162
BstSCI CCNGG 1 cut(s) 143
BstUI CGCG 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 141
CseI GACGC 1 cut(s) 29
CviJI RGCY 2 cut(s) 143, 336
CviKI_1 RGCY 2 cut(s) 143, 336
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 293
Esp3I CGTCTC 1 cut(s) 12
FaiI YATR 1 cut(s) 60
FaqI GGGAC 1 cut(s) 276
FauI CCCGC 1 cut(s) 132
Fnu4HI GCNGC 3 cut(s) 24, 32, 271
Fsp4HI GCNGC 3 cut(s) 24, 32, 271
FspBI CTAG 1 cut(s) 119
GluI GCNGC 3 cut(s) 24, 32, 271
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 144
HgaI GACGC 1 cut(s) 29
HinfI GANTC 1 cut(s) 115
HpaII CCGG 1 cut(s) 144
HphI GGTGA 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 3 cut(s) 119, 283, 293
HpyAV CCTTC 3 cut(s) 43, 116, 152
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 162
Kzo9I GATC 1 cut(s) 68
LpnPI CCDG 3 cut(s) 157, 206, 245
MaeI CTAG 1 cut(s) 119
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 3 cut(s) 66, 97, 245
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 2 cut(s) 176, 327
MnlI CCTC 9 cut(s) 30, 67, 70, 88, 91, 232, 249, 257, 279
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 145
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 136, 162
NciI CCSGG 1 cut(s) 145
NdeII GATC 1 cut(s) 68
NlaIV GGNNCC 2 cut(s) 30, 70
NmeAIII GCCGAG 1 cut(s) 60
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 3 cut(s) 25, 33, 272
PspN4I GGNNCC 2 cut(s) 30, 70
PspPI GGNCC 1 cut(s) 141
PsuI RGATCY 1 cut(s) 68
SatI GCNGC 3 cut(s) 24, 32, 271
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 1 cut(s) 321
SetI ASST 7 cut(s) 41, 81, 127, 243, 268, 290, 338
Sse9I AATT 2 cut(s) 176, 327
SsiI CCGC 6 cut(s) 23, 26, 32, 139, 165, 270
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 277
TasI AATT 2 cut(s) 176, 327
TauI GCSGC 3 cut(s) 26, 34, 273
TfiI GAWTC 1 cut(s) 115
TscAI CASTG 1 cut(s) 200
TspRI CASTG 1 cut(s) 200
XapI RAATTY 1 cut(s) 176
XbaI TCTAGA 1 cut(s) 118
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.