Rmu_sc0041781.1_g000001

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041781.1
OG0000255
Physical Location & Seq
Forward (+)
1274 .. 2208
935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041781.1_g000001.1.cds

Sequence Viewer

Length: 935 bp
atggcagctcctccaaaacttcttcttggtcctccaggacccaaaccttcagactccaccaccaccaccacaacgaaacctctgttgggacgcaccgagaacaactccgccaccaacctctcctccggcaacccctgcctcgacctcttcttccacatcgtacccgacaccccgtcctcttacatcaacgaacaacttcccaagtcctgggcccacaacgccctaaccaccctcaagctaatctgcaacctccgcggcgtccgcggcaccggaaagtccgacaaagaagccttcttcacggcagcattctggctccacagacaccaccccaaaaccctagcctgcaatctcgcctctttcgcccaattcgggtgcttcaaagacctccccgagattctctaccgccttctagaaggccaagacataaggaagaaccgcaaggccgagtggtccatgaaaaagaaactctcccgccgccgtagaggttcaaaatctccgtcacgctcaagttctagctcaagttctggcacaaggtctaggtcatactcaagagatagagatagcaactgtacgtctcgatcaagaacacgatctccgtcgcccccgcagaggcggaggccaggttttaagtcgagaaccaacaaaaggaagaggctgagttacaccacccggaaggagccgagggaggagagggtggtgaaggcgacggagaggacaaactcggaaaaggaaaaggcaagtgttttgagaaaacagaaattcactgacatggcaaacaaggccgtctcgagatacgatcgcgacccggattaccggttcctccacgagcgcgtctcggatctctttgccgcttgcttgaaatccgacctcgaaaatctcaactctaatgagttcaacaacatcagcctcgccgccaagtggtgcccttcgctcga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

311

Amino Acids

35.33

Weight (kDa)

10.39

Isoelectric Point (pI)

61.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 266, 921
AccB7I CCANNNNNTGG 1 cut(s) 207
AccII CGCG 4 cut(s) 255, 264, 801, 831
AclWI GGATC 1 cut(s) 846
AcsI RAATTY 1 cut(s) 758
AcuI CTGAAG 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 2 cut(s) 162, 571
AfiI CCNNNNNNNGG 6 cut(s) 86, 207, 369, 609, 645, 918
AgeI ACCGGT 1 cut(s) 813
AgsI TTSAA 4 cut(s) 379, 489, 859, 895
AhdI GACNNNNNGTC 1 cut(s) 172
AjnI CCWGG 3 cut(s) 34, 206, 619
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AloI GAACNNNNNNTCC 4 cut(s) 577, 609, 800, 832
AluBI AGCT 3 cut(s) 8, 238, 516
AluI AGCT 3 cut(s) 8, 238, 516
Alw26I GTCTC 3 cut(s) 579, 790, 838
AlwI GGATC 1 cut(s) 846
Ama87I CYCGRG 2 cut(s) 389, 787
AoxI GGCC 5 cut(s) 210, 415, 441, 617, 780
ApaI GGGCCC 1 cut(s) 214
ApeKI GCWGC 2 cut(s) 5, 302
ApoI RAATTY 1 cut(s) 758
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
AsiGI ACCGGT 1 cut(s) 813
Asp700I GAANNNNTTC 1 cut(s) 195
AspLEI GCGC 1 cut(s) 831
AspS9I GGNCC 5 cut(s) 29, 38, 210, 211, 450
AsuC2I CCSGG 2 cut(s) 670, 806
AsuHPI GGTGA 1 cut(s) 709
AvaI CYCGRG 2 cut(s) 389, 787
AvaII GGWCC 3 cut(s) 29, 38, 450
BaeGI GKGCMC 2 cut(s) 214, 926
BanI GGYRCC 2 cut(s) 266, 921
BanII GRGCYC 1 cut(s) 214
BauI CACGAG 1 cut(s) 824
BbvI GCAGC 2 cut(s) 17, 314
BceAI ACGGC 3 cut(s) 315, 462, 767
BciT130I CCWGG 3 cut(s) 36, 208, 621
BcnI CCSGG 2 cut(s) 670, 806
BcoDI GTCTC 3 cut(s) 579, 790, 838
BfaI CTAG 4 cut(s) 338, 410, 513, 537
BisI GCNGC 7 cut(s) 6, 256, 265, 303, 475, 849, 912
BlsI GCNGC 7 cut(s) 7, 257, 266, 304, 476, 850, 913
Bme1390I CCNGG 5 cut(s) 36, 208, 621, 670, 806
Bme18I GGWCC 3 cut(s) 29, 38, 450
BmeRI GACNNNNNGTC 1 cut(s) 172
BmeT110I CYCGRG 2 cut(s) 389, 787
BmgT120I GGNCC 5 cut(s) 29, 38, 210, 211, 450
BmiI GGNNCC 7 cut(s) 40, 212, 268, 314, 678, 818, 923
BmrFI CCNGG 5 cut(s) 36, 208, 621, 670, 806
BplI GAGNNNNNCTC 4 cut(s) 89, 121, 818, 850
BpmI CTGGAG 1 cut(s) 18
BpuEI CTTGAG 4 cut(s) 218, 490, 502, 532
BpuMI CCSGG 2 cut(s) 670, 806
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 4 cut(s) 207, 253, 262, 680
BsaWI WCCGGW 2 cut(s) 269, 813
BsaXI ACNNNNNCTCC 6 cut(s) 107, 137, 577, 607, 607, 637
Bsc4I CCNNNNNNNGG 6 cut(s) 86, 207, 369, 609, 645, 918
Bse118I RCCGGY 1 cut(s) 813
BseBI CCWGG 3 cut(s) 36, 208, 621
BseDI CCNNGG 4 cut(s) 207, 253, 262, 680
BseLI CCNNNNNNNGG 6 cut(s) 86, 207, 369, 609, 645, 918
BseMII CTCAG 1 cut(s) 647
BseRI GAGGAG 2 cut(s) 112, 701
BseSI GKGCMC 2 cut(s) 214, 926
BseXI GCAGC 2 cut(s) 17, 314
Bsh1236I CGCG 4 cut(s) 255, 264, 801, 831
Bsh1285I CGRYCG 1 cut(s) 799
BshFI GGCC 5 cut(s) 212, 417, 443, 619, 782
BshNI GGYRCC 2 cut(s) 266, 921
BshTI ACCGGT 1 cut(s) 813
BsiEI CGRYCG 1 cut(s) 799
BsiHKCI CYCGRG 2 cut(s) 389, 787
BsiSI CCGG 5 cut(s) 126, 270, 670, 806, 814
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 6 cut(s) 86, 207, 369, 609, 645, 918
BsmAI GTCTC 3 cut(s) 579, 790, 838
BsmBI CGTCTC 3 cut(s) 579, 790, 838
BsmFI GGGAC 1 cut(s) 102
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 5 cut(s) 212, 417, 443, 619, 782
BsoBI CYCGRG 2 cut(s) 389, 787
Bsp120I GGGCCC 1 cut(s) 210
Bsp1286I GDGCHC 2 cut(s) 214, 926
Bsp143I GATC 4 cut(s) 578, 590, 796, 838
Bsp68I TCGCGA 1 cut(s) 801
BspANI GGCC 5 cut(s) 212, 417, 443, 619, 782
BspCNI CTCAG 1 cut(s) 648
BspFNI CGCG 4 cut(s) 255, 264, 801, 831
BspLI GGNNCC 7 cut(s) 40, 212, 268, 314, 678, 818, 923
BspPI GGATC 1 cut(s) 846
BspT107I GGYRCC 2 cut(s) 266, 921
BsrFI RCCGGY 1 cut(s) 813
BssAI RCCGGY 1 cut(s) 813
BssECI CCNNGG 4 cut(s) 207, 253, 262, 680
BssMI GATC 4 cut(s) 578, 590, 796, 838
BssNI GRCGYC 1 cut(s) 258
BssSI CACGAG 1 cut(s) 824
Bst2BI CACGAG 1 cut(s) 824
Bst2UI CCWGG 3 cut(s) 36, 208, 621
Bst4CI ACNGT 1 cut(s) 569
Bst6I CTCTTC 2 cut(s) 152, 644
BstACI GRCGYC 1 cut(s) 258
BstAPI GCANNNNNTGC 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 343, 853
BstDEI CTNAG 1 cut(s) 656
BstDSI CCRYGG 2 cut(s) 253, 262
BstFNI CGCG 4 cut(s) 255, 264, 801, 831
BstHHI GCGC 1 cut(s) 831
BstKTI GATC 4 cut(s) 581, 593, 799, 841
BstMAI GTCTC 3 cut(s) 579, 790, 838
BstMBI GATC 4 cut(s) 578, 590, 796, 838
BstMCI CGRYCG 1 cut(s) 799
BstMWI GCNNNNNNNGC 7 cut(s) 135, 218, 252, 261, 264, 359, 779
BstNI CCWGG 3 cut(s) 36, 208, 621
BstSCI CCNGG 5 cut(s) 34, 206, 619, 668, 804
BstSLI GKGCMC 2 cut(s) 214, 926
BstUI CGCG 4 cut(s) 255, 264, 801, 831
BstV1I GCAGC 2 cut(s) 17, 314
BstX2I RGATCY 1 cut(s) 838
BstYI RGATCY 1 cut(s) 838
BsuRI GGCC 5 cut(s) 212, 417, 443, 619, 782
BtgI CCRYGG 2 cut(s) 253, 262
BtsIMutI CAGTG 1 cut(s) 762
BtuMI TCGCGA 1 cut(s) 801
Cac8I GCNNGC 2 cut(s) 343, 853
CfoI GCGC 1 cut(s) 831
Cfr10I RCCGGY 1 cut(s) 813
Cfr13I GGNCC 5 cut(s) 29, 38, 210, 211, 450
Cfr42I CCGCGG 2 cut(s) 256, 265
CseI GACGC 3 cut(s) 99, 247, 820
Csp6I GTAC 2 cut(s) 161, 570
CspAI ACCGGT 1 cut(s) 813
CviAII CATG 2 cut(s) 454, 769
CviQI GTAC 2 cut(s) 161, 570
DdeI CTNAG 1 cut(s) 656
DpnI GATC 4 cut(s) 580, 592, 798, 840
DpnII GATC 4 cut(s) 578, 590, 796, 838
DriI GACNNNNNGTC 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 152, 644
Eam1105I GACNNNNNGTC 1 cut(s) 172
EarI CTCTTC 2 cut(s) 152, 644
EciI GGCGGA 2 cut(s) 97, 628
Eco24I GRGCYC 1 cut(s) 214
Eco47I GGWCC 3 cut(s) 29, 38, 450
Eco57I CTGAAG 1 cut(s) 33
Eco88I CYCGRG 2 cut(s) 389, 787
EcoO109I RGGNCCY 1 cut(s) 38
EcoRII CCWGG 3 cut(s) 34, 206, 619
EcoT38I GRGCYC 1 cut(s) 214
Esp3I CGTCTC 3 cut(s) 579, 790, 838
FaeI CATG 2 cut(s) 457, 772
FaiI YATR 4 cut(s) 425, 455, 544, 770
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 453, 768
FauI CCCGC 2 cut(s) 479, 612
Fnu4HI GCNGC 7 cut(s) 6, 256, 265, 303, 475, 849, 912
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 7 cut(s) 6, 256, 265, 303, 475, 849, 912
FspBI CTAG 4 cut(s) 338, 410, 513, 537
GlaI GCGC 1 cut(s) 830
GluI GCNGC 7 cut(s) 6, 256, 265, 303, 475, 849, 912
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 5 cut(s) 212, 417, 443, 619, 782
HapII CCGG 5 cut(s) 126, 270, 670, 806, 814
HgaI GACGC 3 cut(s) 99, 247, 820
HhaI GCGC 1 cut(s) 831
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 2 cut(s) 457, 772
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HinfI GANTC 2 cut(s) 53, 394
HpaII CCGG 5 cut(s) 126, 270, 670, 806, 814
HphI GGTGA 1 cut(s) 709
Hpy188I TCNGA 5 cut(s) 52, 280, 724, 838, 865
Hpy188III TCNNGA 8 cut(s) 410, 549, 576, 582, 633, 787, 789, 800
Hpy99I CGWCG 2 cut(s) 601, 709
HpyAV CCTTC 6 cut(s) 57, 301, 407, 416, 667, 694
HpyCH4III ACNGT 1 cut(s) 569
HpyCH4IV ACGT 1 cut(s) 572
HpyCH4V TGCA 2 cut(s) 246, 345
HpyF10VI GCNNNNNNNGC 7 cut(s) 135, 218, 252, 261, 264, 359, 779
HpyF3I CTNAG 1 cut(s) 656
HpySE526I ACGT 1 cut(s) 572
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 2 cut(s) 457, 772
HspAI GCGC 1 cut(s) 829
KspI CCGCGG 2 cut(s) 256, 265
Kzo9I GATC 4 cut(s) 578, 590, 796, 838
LmnI GCTCC 3 cut(s) 13, 318, 676
Lsp1109I GCAGC 2 cut(s) 17, 314
MaeI CTAG 4 cut(s) 338, 410, 513, 537
MaeII ACGT 1 cut(s) 572
MaeIII GTNAC 2 cut(s) 498, 659
MalI GATC 4 cut(s) 580, 592, 798, 840
MboI GATC 4 cut(s) 578, 590, 796, 838
MboII GAAGA 6 cut(s) 14, 139, 142, 286, 442, 661
MflI RGATCY 1 cut(s) 838
MhlI GDGCHC 2 cut(s) 214, 926
MluCI AATT 2 cut(s) 365, 758
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 2 cut(s) 303, 888
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 1 cut(s) 627
MslI CAYNNNNRTG 1 cut(s) 767
MspA1I CMGCKG 2 cut(s) 255, 264
MspI CCGG 5 cut(s) 126, 270, 670, 806, 814
MspR9I CCNGG 5 cut(s) 36, 208, 621, 670, 806
Mva1269I GAATGC 1 cut(s) 305
MvaI CCWGG 3 cut(s) 36, 208, 621
MvnI CGCG 4 cut(s) 255, 264, 801, 831
MwoI GCNNNNNNNGC 7 cut(s) 135, 218, 252, 261, 264, 359, 779
NciI CCSGG 2 cut(s) 670, 806
NdeII GATC 4 cut(s) 578, 590, 796, 838
NlaIII CATG 2 cut(s) 457, 772
NlaIV GGNNCC 7 cut(s) 40, 212, 268, 314, 678, 818, 923
NmeAIII GCCGAG 2 cut(s) 469, 705
NmuCI GTSAC 1 cut(s) 498
NruI TCGCGA 1 cut(s) 801
PaeR7I CTCGAG 1 cut(s) 787
PctI GAATGC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 394
PflMI CCANNNNNTGG 1 cut(s) 207
PfoI TCCNGGA 1 cut(s) 34
PinAI ACCGGT 1 cut(s) 813
PkrI GCNGC 7 cut(s) 7, 257, 266, 304, 476, 850, 913
Ple19I CGATCG 1 cut(s) 799
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PpuMI RGGWCCY 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 3 cut(s) 34, 206, 619
PspGI CCWGG 3 cut(s) 34, 206, 619
PspN4I GGNNCC 7 cut(s) 40, 212, 268, 314, 678, 818, 923
PspOMI GGGCCC 1 cut(s) 210
PspPI GGNCC 5 cut(s) 29, 38, 210, 211, 450
PspPPI RGGWCCY 1 cut(s) 38
PsuI RGATCY 1 cut(s) 838
PvuI CGATCG 1 cut(s) 799
RruI TCGCGA 1 cut(s) 801
RsaI GTAC 2 cut(s) 162, 571
RsaNI GTAC 2 cut(s) 161, 570
RseI CAYNNNNRTG 1 cut(s) 767
SacII CCGCGG 2 cut(s) 256, 265
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 7 cut(s) 6, 256, 265, 303, 475, 849, 912
Sau3AI GATC 4 cut(s) 578, 590, 796, 838
Sau96I GGNCC 5 cut(s) 29, 38, 210, 211, 450
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 5 cut(s) 36, 208, 621, 670, 806
SduI GDGCHC 2 cut(s) 214, 926
Sfr274I CTCGAG 1 cut(s) 787
Sfr303I CCGCGG 2 cut(s) 256, 265
SgrBI CCGCGG 2 cut(s) 256, 265
SinI GGWCC 3 cut(s) 29, 38, 450
SlaI CTCGAG 1 cut(s) 787
SmiMI CAYNNNNRTG 1 cut(s) 767
SmlI CTYRAG 5 cut(s) 233, 505, 517, 547, 787
SmoI CTYRAG 5 cut(s) 233, 505, 517, 547, 787
Sse9I AATT 2 cut(s) 365, 758
SspMI CTAG 4 cut(s) 338, 410, 513, 537
StyD4I CCNGG 5 cut(s) 34, 206, 619, 668, 804
TaaI ACNGT 1 cut(s) 569
TaiI ACGT 1 cut(s) 575
TaqI TCGA 6 cut(s) 141, 577, 632, 788, 870, 933
TasI AATT 2 cut(s) 365, 758
TauI GCSGC 5 cut(s) 258, 267, 477, 851, 914
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 1 cut(s) 769
TseFI GTSAC 1 cut(s) 498
TseI GCWGC 2 cut(s) 5, 302
Tsp45I GTSAC 1 cut(s) 498
TspDTI ATGAA 1 cut(s) 470
TspGWI ACGGA 3 cut(s) 486, 585, 722
TspRI CASTG 1 cut(s) 769
Van91I CCANNNNNTGG 1 cut(s) 207
VpaK11BI GGWCC 3 cut(s) 29, 38, 450
XapI RAATTY 1 cut(s) 758
XbaI TCTAGA 1 cut(s) 409
XhoI CTCGAG 1 cut(s) 787
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 4 cut(s) 338, 410, 513, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.