RLG00000004941

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000255
Physical Location & Seq
Forward (+)
63881249 .. 63882521
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004941

Sequence Viewer

Length: 987 bp
ATGAAGCCACAAATCCTCTCAATTCTCAAAGGCGCCAAACCAAACCAAAACCATGTCAACTTGGCAAGAACCCAAACTCCTACTCTTCTTCTCGGTCCTCCAGAGATCGGAACAGTACCCACCACCACTGCTCCACCACAAGTCAATTCCGGCGACCCCTTGATGGATCTCATGGTCTCCAATTACAACAACACCACGTCAACTTCCCCCCGACCCCCAATGGGTTTGACCGAGAACAGTTCGCCTACTTTTCTCACCTCCGGCAACCCCTGCCTTGATTTTTTCTTCCACGTGGTGCCTGACACCAAGCCTGAATATTTCAACCAACAGCTCCCGTTGGCTTGGTCCAACGATGCCGTAACCACTCTCAAGCTCATCTGCAACCTGCGAGGTGTACGTGGCACCGGAAAGTGTGACAAAGAAGGGTTCTACACAGCAGCGTATTGGCTCTACAACCACCCTAAAACCCTAGCTTACAATGTAGCGTCGGTTGCAGCTTTTGGGTATTTCAAAGATCTGCCGGAGATTCTATACCGCCTTCTAGAAGGCCAAGACATCAGGAAGACCCAAAAGGAAGAGTGGGAAAGGATCAAGCGCTATTGCTATAAGGGACCGGGTAAGGTAGACGGGTTAAAGTCACTAAAGCTCGGGCATTTAATGGGTCCAGCGGATCATCCACCTAGAGATGTTAAACTGCTGAGGCTTTGGGAGAAATTCATCGCCGTCAAATCTAACAAGAAAAAACTCGAGAAGGGGGAGTATAAAACTGTTCAAGCAGAATGGGCAGCGGATAGAGACGAACTGAAAAGTGATGAAGCTAGAGAACTGATGCATCAAAAGATCATAGACAAGACCAAGAATGCAGTGGCTAGGTATGAGCAAGACTCGGATTTGAAGTTCCTATACGAACAAATTTGGGATGTGTTTGGGGATTGCTTGAAGTCCATGGAGGCGGACACGGAGGCTGAGAGGAACGAGATGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

329

Amino Acids

37.26

Weight (kDa)

8.11

Isoelectric Point (pI)

22.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 77 - 315 1.3e-47 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 393
AccB1I GGYRCC 3 cut(s) 32, 295, 401
AccI GTMKAC 1 cut(s) 624
AciI CCGC 4 cut(s) 535, 668, 788, 953
AclWI GGATC 3 cut(s) 174, 596, 678
AcsI RAATTY 2 cut(s) 713, 912
AcvI CACGTG 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 33
AdeI CACNNNGTG 1 cut(s) 295
AfaI GTAC 2 cut(s) 117, 396
AfeI AGCGCT 1 cut(s) 596
AfiI CCNNNNNNNGG 3 cut(s) 107, 163, 221
AgsI TTSAA 5 cut(s) 322, 511, 773, 895, 940
AjiI CACGTC 1 cut(s) 198
AloI GAACNNNNNNTCC 4 cut(s) 61, 93, 881, 913
AluBI AGCT 6 cut(s) 331, 373, 473, 497, 646, 818
AluI AGCT 6 cut(s) 331, 373, 473, 497, 646, 818
Alw26I GTCTC 2 cut(s) 181, 789
AlwI GGATC 3 cut(s) 174, 596, 678
Ama87I CYCGRG 2 cut(s) 647, 746
Aor51HI AGCGCT 1 cut(s) 596
AoxI GGCC 1 cut(s) 547
ApeKI GCWGC 3 cut(s) 437, 494, 785
ApoI RAATTY 2 cut(s) 713, 912
AspLEI GCGC 2 cut(s) 35, 597
AspS9I GGNCC 4 cut(s) 95, 345, 611, 662
AsuC2I CCSGG 1 cut(s) 615
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 2 cut(s) 647, 746
AvaII GGWCC 4 cut(s) 95, 345, 611, 662
BanI GGYRCC 3 cut(s) 32, 295, 401
BarI GAAGNNNNNNTAC 2 cut(s) 887, 919
BbrPI CACGTG 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 569
BbvCI CCTCAGC 1 cut(s) 698
BbvI GCAGC 3 cut(s) 449, 506, 797
BccI CCATC 1 cut(s) 157
BceAI ACGGC 2 cut(s) 341, 707
BcnI CCSGG 1 cut(s) 615
BcoDI GTCTC 2 cut(s) 181, 789
BfaI CTAG 5 cut(s) 470, 542, 681, 819, 870
BfoI RGCGCY 2 cut(s) 36, 598
BfuAI ACCTGC 1 cut(s) 393
BglII AGATCT 1 cut(s) 514
BisI GCNGC 3 cut(s) 438, 495, 786
BlsI GCNGC 3 cut(s) 439, 496, 787
Bme1390I CCNGG 1 cut(s) 615
Bme18I GGWCC 4 cut(s) 95, 345, 611, 662
BmeT110I CYCGRG 2 cut(s) 647, 746
BmgBI CACGTC 1 cut(s) 198
BmgT120I GGNCC 4 cut(s) 95, 345, 611, 662
BmiI GGNNCC 5 cut(s) 34, 297, 403, 612, 663
BmrFI CCNGG 1 cut(s) 615
BmsI GCATC 3 cut(s) 343, 819, 841
BpiI GAAGAC 1 cut(s) 569
BplI GAGNNNNNCTC 2 cut(s) 869, 901
BpmI CTGGAG 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 698
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 1 cut(s) 615
BsaAI YACGTR 2 cut(s) 292, 398
BsaHI GRCGYC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 945
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 4 cut(s) 61, 91, 115, 145
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 163, 221
BseDI CCNNGG 1 cut(s) 945
BseGI GGATG 2 cut(s) 673, 925
BseLI CCNNNNNNNGG 3 cut(s) 107, 163, 221
BseMII CTCAG 2 cut(s) 689, 957
BseXI GCAGC 3 cut(s) 449, 506, 797
BshFI GGCC 1 cut(s) 549
BshNI GGYRCC 3 cut(s) 32, 295, 401
BsiHKCI CYCGRG 2 cut(s) 647, 746
BsiSI CCGG 5 cut(s) 150, 261, 405, 521, 614
BslFI GGGAC 1 cut(s) 624
BslI CCNNNNNNNGG 3 cut(s) 107, 163, 221
BsmAI GTCTC 2 cut(s) 181, 789
BsmBI CGTCTC 1 cut(s) 789
BsmFI GGGAC 1 cut(s) 624
BsmI GAATGC 1 cut(s) 865
BsnI GGCC 1 cut(s) 549
Bso31I GGTCTC 1 cut(s) 181
BsoBI CYCGRG 2 cut(s) 647, 746
Bsp143I GATC 7 cut(s) 105, 166, 514, 588, 670, 840, 981
Bsp19I CCATGG 1 cut(s) 945
BspACI CCGC 4 cut(s) 535, 668, 788, 953
BspANI GGCC 1 cut(s) 549
BspCNI CTCAG 2 cut(s) 690, 958
BspLI GGNNCC 5 cut(s) 34, 297, 403, 612, 663
BspMI ACCTGC 1 cut(s) 393
BspPI GGATC 3 cut(s) 174, 596, 678
BspT107I GGYRCC 3 cut(s) 32, 295, 401
BspTNI GGTCTC 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 945
BssMI GATC 7 cut(s) 105, 166, 514, 588, 670, 840, 981
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 945
Bst4CI ACNGT 3 cut(s) 115, 239, 769
Bst6I CTCTTC 2 cut(s) 90, 570
BstACI GRCGYC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 270
BstBAI YACGTR 2 cut(s) 292, 398
BstDEI CTNAG 2 cut(s) 698, 966
BstDSI CCRYGG 1 cut(s) 945
BstF5I GGATG 2 cut(s) 673, 925
BstH2I RGCGCY 2 cut(s) 36, 598
BstHHI GCGC 2 cut(s) 35, 597
BstKTI GATC 7 cut(s) 108, 169, 517, 591, 673, 843, 984
BstMAI GTCTC 2 cut(s) 181, 789
BstMBI GATC 7 cut(s) 105, 166, 514, 588, 670, 840, 981
BstMWI GCNNNNNNNGC 3 cut(s) 270, 491, 782
BstSCI CCNGG 1 cut(s) 613
BstV1I GCAGC 3 cut(s) 449, 506, 797
BstV2I GAAGAC 1 cut(s) 569
BstX2I RGATCY 2 cut(s) 166, 514
BstYI RGATCY 2 cut(s) 166, 514
BsuRI GGCC 1 cut(s) 549
BtgI CCRYGG 1 cut(s) 945
BtgZI GCGATG 1 cut(s) 703
BtrI CACGTC 1 cut(s) 198
BtsCI GGATG 2 cut(s) 673, 925
BtsI GCAGTG 2 cut(s) 126, 870
BtsIMutI CAGTG 2 cut(s) 126, 870
BveI ACCTGC 1 cut(s) 393
CfoI GCGC 2 cut(s) 35, 597
Cfr13I GGNCC 4 cut(s) 95, 345, 611, 662
CseI GACGC 1 cut(s) 474
Csp6I GTAC 2 cut(s) 116, 395
CviAII CATG 3 cut(s) 53, 172, 946
CviQI GTAC 2 cut(s) 116, 395
DdeI CTNAG 2 cut(s) 698, 966
DinI GGCGCC 1 cut(s) 34
DpnI GATC 7 cut(s) 107, 168, 516, 590, 672, 842, 983
DpnII GATC 7 cut(s) 105, 166, 514, 588, 670, 840, 981
DraIII CACNNNGTG 1 cut(s) 295
Eam1104I CTCTTC 2 cut(s) 90, 570
EarI CTCTTC 2 cut(s) 90, 570
EciI GGCGGA 1 cut(s) 968
Eco130I CCWWGG 1 cut(s) 945
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 4 cut(s) 95, 345, 611, 662
Eco47III AGCGCT 1 cut(s) 596
Eco72I CACGTG 1 cut(s) 292
Eco88I CYCGRG 2 cut(s) 647, 746
EcoT14I CCWWGG 1 cut(s) 945
EcoT22I ATGCAT 1 cut(s) 834
EgeI GGCGCC 1 cut(s) 34
EheI GGCGCC 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 945
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 3 cut(s) 56, 175, 949
FaiI YATR 9 cut(s) 54, 173, 532, 606, 762, 845, 876, 904, 947
FaqI GGGAC 1 cut(s) 624
FatI CATG 3 cut(s) 52, 171, 945
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 3 cut(s) 438, 495, 786
FokI GGATG 2 cut(s) 660, 932
Fsp4HI GCNGC 3 cut(s) 438, 495, 786
FspBI CTAG 5 cut(s) 470, 542, 681, 819, 870
GlaI GCGC 2 cut(s) 34, 596
GluI GCNGC 3 cut(s) 438, 495, 786
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 2 cut(s) 36, 598
HaeIII GGCC 1 cut(s) 549
HapII CCGG 5 cut(s) 150, 261, 405, 521, 614
HgaI GACGC 1 cut(s) 474
HhaI GCGC 2 cut(s) 35, 597
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 3 cut(s) 56, 175, 949
Hin6I GCGC 2 cut(s) 33, 595
HinP1I GCGC 2 cut(s) 33, 595
HincII GTYRAC 2 cut(s) 58, 201
HindII GTYRAC 2 cut(s) 58, 201
HinfI GANTC 2 cut(s) 526, 884
HpaII CCGG 5 cut(s) 150, 261, 405, 521, 614
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 4 cut(s) 58, 201, 395, 625
Hpy188I TCNGA 3 cut(s) 110, 889, 986
Hpy188III TCNNGA 4 cut(s) 101, 542, 559, 748
Hpy8I GTNNAC 4 cut(s) 58, 201, 395, 625
Hpy99I CGWCG 1 cut(s) 490
HpyAV CCTTC 4 cut(s) 416, 539, 548, 745
HpyCH4III ACNGT 3 cut(s) 115, 239, 769
HpyCH4IV ACGT 3 cut(s) 197, 291, 397
HpyCH4V TGCA 4 cut(s) 381, 494, 832, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 270, 491, 782
HpyF3I CTNAG 2 cut(s) 698, 966
HpySE526I ACGT 3 cut(s) 197, 291, 397
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 3 cut(s) 56, 175, 949
HspAI GCGC 2 cut(s) 33, 595
KasI GGCGCC 1 cut(s) 32
Kzo9I GATC 7 cut(s) 105, 166, 514, 588, 670, 840, 981
LmnI GCTCC 2 cut(s) 136, 336
Lsp1109I GCAGC 3 cut(s) 449, 506, 797
LweI GCATC 3 cut(s) 343, 819, 841
MaeI CTAG 5 cut(s) 470, 542, 681, 819, 870
MaeII ACGT 3 cut(s) 197, 291, 397
MaeIII GTNAC 3 cut(s) 358, 413, 636
MalI GATC 7 cut(s) 107, 168, 516, 590, 672, 842, 983
MboI GATC 7 cut(s) 105, 166, 514, 588, 670, 840, 981
MboII GAAGA 5 cut(s) 77, 80, 277, 574, 587
MflI RGATCY 2 cut(s) 166, 514
MluCI AATT 5 cut(s) 21, 145, 181, 713, 912
Mly113I GGCGCC 1 cut(s) 33
MlyI GAGTC 1 cut(s) 878
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 8 cut(s) 26, 108, 268, 383, 693, 943, 955, 963
Mph1103I ATGCAT 1 cut(s) 834
MseI TTAA 3 cut(s) 632, 656, 690
MspA1I CMGCKG 2 cut(s) 668, 788
MspI CCGG 5 cut(s) 150, 261, 405, 521, 614
MspR9I CCNGG 1 cut(s) 615
Mva1269I GAATGC 1 cut(s) 865
MwoI GCNNNNNNNGC 3 cut(s) 270, 491, 782
NarI GGCGCC 1 cut(s) 33
NciI CCSGG 1 cut(s) 615
NcoI CCATGG 1 cut(s) 945
NdeII GATC 7 cut(s) 105, 166, 514, 588, 670, 840, 981
NlaIII CATG 3 cut(s) 56, 175, 949
NlaIV GGNNCC 5 cut(s) 34, 297, 403, 612, 663
NmuCI GTSAC 2 cut(s) 413, 636
NsiI ATGCAT 1 cut(s) 834
PaeR7I CTCGAG 1 cut(s) 746
PctI GAATGC 1 cut(s) 865
PfeI GAWTC 1 cut(s) 526
PkrI GCNGC 3 cut(s) 439, 496, 787
PleI GAGTC 1 cut(s) 878
PluTI GGCGCC 1 cut(s) 36
PmaCI CACGTG 1 cut(s) 292
PmlI CACGTG 1 cut(s) 292
PpsI GAGTC 1 cut(s) 878
Ppu21I YACGTR 2 cut(s) 292, 398
PspCI CACGTG 1 cut(s) 292
PspN4I GGNNCC 5 cut(s) 34, 297, 403, 612, 663
PspPI GGNCC 4 cut(s) 95, 345, 611, 662
PsuI RGATCY 2 cut(s) 166, 514
RsaI GTAC 2 cut(s) 117, 396
RsaNI GTAC 2 cut(s) 116, 395
SaqAI TTAA 3 cut(s) 632, 656, 690
SatI GCNGC 3 cut(s) 438, 495, 786
Sau3AI GATC 7 cut(s) 105, 166, 514, 588, 670, 840, 981
Sau96I GGNCC 4 cut(s) 95, 345, 611, 662
SchI GAGTC 1 cut(s) 878
ScrFI CCNGG 1 cut(s) 615
SfaNI GCATC 3 cut(s) 343, 819, 841
SfoI GGCGCC 1 cut(s) 34
Sfr274I CTCGAG 1 cut(s) 746
SinI GGWCC 4 cut(s) 95, 345, 611, 662
SlaI CTCGAG 1 cut(s) 746
SmlI CTYRAG 2 cut(s) 368, 746
SmoI CTYRAG 2 cut(s) 368, 746
Sse9I AATT 5 cut(s) 21, 145, 181, 713, 912
SsiI CCGC 4 cut(s) 535, 668, 788, 953
SspDI GGCGCC 1 cut(s) 32
SspI AATATT 1 cut(s) 317
SspMI CTAG 5 cut(s) 470, 542, 681, 819, 870
StyD4I CCNGG 1 cut(s) 613
StyI CCWWGG 1 cut(s) 945
TaaI ACNGT 3 cut(s) 115, 239, 769
TaiI ACGT 3 cut(s) 200, 294, 400
TaqI TCGA 1 cut(s) 747
TaqII GACCGA 2 cut(s) 83, 245
TasI AATT 5 cut(s) 21, 145, 181, 713, 912
TfiI GAWTC 1 cut(s) 526
Tru1I TTAA 3 cut(s) 632, 656, 690
Tru9I TTAA 3 cut(s) 632, 656, 690
TscAI CASTG 2 cut(s) 133, 870
TseFI GTSAC 2 cut(s) 413, 636
TseI GCWGC 3 cut(s) 437, 494, 785
Tsp45I GTSAC 2 cut(s) 413, 636
TspDTI ATGAA 3 cut(s) 17, 706, 828
TspGWI ACGGA 1 cut(s) 974
TspRI CASTG 2 cut(s) 133, 870
VpaK11BI GGWCC 4 cut(s) 95, 345, 611, 662
XapI RAATTY 2 cut(s) 713, 912
XbaI TCTAGA 1 cut(s) 541
XcmI CCANNNNNNNNNTGG 1 cut(s) 862
XhoI CTCGAG 1 cut(s) 746
XmiI GTMKAC 1 cut(s) 624
XspI CTAG 5 cut(s) 470, 542, 681, 819, 870
Zsp2I ATGCAT 1 cut(s) 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.