Rroxscaffold_6G00415020

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000255
Physical Location & Seq
Reverse (-)
37271209 .. 37279364
8156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00415020.1

Sequence Viewer

Length: 435 bp
ATGCACAACGAGAGACCACCGAAGCGGAAGAGATCACATTCACGAGCTCAACCGGACAACCGATCCACCACCCAACCCAAGCCCCGTTACGGCGACCCCTTCATCGATTCCATGGTCGGCGATTTCAACAACCTCAACAAGCCAACCCCAAAACCCCCGATCGGCTTCAACGAGAACAGCTCAGCCACATTCCTCTCCTTCGGCAACCCTTGCCTCAATCTCTTCCTCCACGTCAATCCTAAAATATTGTACTTGAGACATCGACGGAAGGATTCTCAAGCGGATGATCTGATTACGACCTTGCCCTTGGAAGGTTGTGTAGCAAAATTTAGGGCGACATACGTTGATGGTGATATACAACCAAATACCTCTTACACTAATTTCTTGATTAATTTGTATACGAATAATGCCCTTATTCATGGATCAGAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

144

Amino Acids

16.36

Weight (kDa)

9.39

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 398
AciI CCGC 2 cut(s) 25, 281
AclWI GGATC 2 cut(s) 57, 430
AcsI RAATTY 1 cut(s) 326
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 3 cut(s) 89, 161, 311
AgsI TTSAA 2 cut(s) 127, 169
AjiI CACGTC 1 cut(s) 232
AluBI AGCT 2 cut(s) 47, 180
AluI AGCT 2 cut(s) 47, 180
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 2 cut(s) 7, 250
AlwI GGATC 2 cut(s) 57, 430
ApoI RAATTY 1 cut(s) 326
AseI ATTAAT 1 cut(s) 390
AsuHPI GGTGA 1 cut(s) 362
BanII GRGCYC 1 cut(s) 49
BauI CACGAG 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 49
BccI CCATC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 7, 250
BlpI GCTNAGC 1 cut(s) 181
BmgBI CACGTC 1 cut(s) 232
BplI GAGNNNNNCTC 2 cut(s) 164, 196
Bpu1102I GCTNAGC 1 cut(s) 181
BpuEI CTTGAG 2 cut(s) 261, 274
Bsa29I ATCGAT 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 7
BsaJI CCNNGG 2 cut(s) 111, 306
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 161, 311
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 111, 306
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 3 cut(s) 89, 161, 311
BseMII CTCAG 1 cut(s) 195
Bsh1285I CGRYCG 1 cut(s) 162
BshVI ATCGAT 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 49
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 3 cut(s) 89, 161, 311
BsmAI GTCTC 2 cut(s) 7, 250
Bso31I GGTCTC 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 5 cut(s) 32, 62, 159, 286, 422
Bsp1720I GCTNAGC 1 cut(s) 181
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 2 cut(s) 25, 281
BspCNI CTCAG 1 cut(s) 194
BspDI ATCGAT 1 cut(s) 105
BspPI GGATC 2 cut(s) 57, 430
BspTNI GGTCTC 1 cut(s) 7
BssECI CCNNGG 2 cut(s) 111, 306
BssMI GATC 5 cut(s) 32, 62, 159, 286, 422
BssNAI GTATAC 1 cut(s) 399
BssSI CACGAG 1 cut(s) 42
BssT1I CCWWGG 2 cut(s) 111, 306
Bst1107I GTATAC 1 cut(s) 399
Bst2BI CACGAG 1 cut(s) 42
Bst6I CTCTTC 2 cut(s) 23, 227
BstAPI GCANNNNNTGC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 5 cut(s) 35, 65, 162, 289, 425
BstMAI GTCTC 2 cut(s) 7, 250
BstMBI GATC 5 cut(s) 32, 62, 159, 286, 422
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstZ17I GTATAC 1 cut(s) 399
Bsu15I ATCGAT 1 cut(s) 105
BsuTUI ATCGAT 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 111
BtrI CACGTC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 289
ClaI ATCGAT 1 cut(s) 105
Csp6I GTAC 1 cut(s) 250
CviAII CATG 2 cut(s) 112, 419
CviJI RGCY 6 cut(s) 47, 82, 142, 165, 180, 185
CviKI_1 RGCY 6 cut(s) 47, 82, 142, 165, 180, 185
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 181
DpnI GATC 5 cut(s) 34, 64, 161, 288, 424
DpnII GATC 5 cut(s) 32, 62, 159, 286, 422
Eam1104I CTCTTC 2 cut(s) 23, 227
EarI CTCTTC 2 cut(s) 23, 227
Ecl136II GAGCTC 1 cut(s) 47
Eco130I CCWWGG 2 cut(s) 111, 306
Eco24I GRGCYC 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 7
Eco53kI GAGCTC 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 47
EcoT14I CCWWGG 2 cut(s) 111, 306
EcoT38I GRGCYC 1 cut(s) 49
ErhI CCWWGG 2 cut(s) 111, 306
FaeI CATG 2 cut(s) 115, 422
FaiI YATR 6 cut(s) 113, 340, 356, 399, 420, 433
FatI CATG 2 cut(s) 111, 418
FblI GTMKAC 1 cut(s) 398
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 49
HapII CCGG 1 cut(s) 53
Hin1II CATG 2 cut(s) 115, 422
HinfI GANTC 2 cut(s) 107, 272
HpaII CCGG 1 cut(s) 53
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 399
Hpy188I TCNGA 2 cut(s) 291, 427
Hpy188III TCNNGA 2 cut(s) 42, 385
Hpy8I GTNNAC 1 cut(s) 399
Hpy99I CGWCG 1 cut(s) 267
HpyAV CCTTC 4 cut(s) 109, 208, 262, 305
HpyCH4IV ACGT 2 cut(s) 231, 342
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 181
HpySE526I ACGT 2 cut(s) 231, 342
Hsp92II CATG 2 cut(s) 115, 422
Kzo9I GATC 5 cut(s) 32, 62, 159, 286, 422
LpnPI CCDG 1 cut(s) 66
MaeII ACGT 2 cut(s) 231, 342
MaeIII GTNAC 1 cut(s) 86
MalI GATC 5 cut(s) 34, 64, 161, 288, 424
MboI GATC 5 cut(s) 32, 62, 159, 286, 422
MboII GAAGA 2 cut(s) 40, 214
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 3 cut(s) 326, 379, 391
MnlI CCTC 5 cut(s) 143, 203, 224, 236, 379
MseI TTAA 1 cut(s) 390
MspI CCGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 210
NcoI CCATGG 1 cut(s) 111
NdeII GATC 5 cut(s) 32, 62, 159, 286, 422
NlaIII CATG 2 cut(s) 115, 422
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 2 cut(s) 107, 272
Ple19I CGATCG 1 cut(s) 162
PshBI ATTAAT 1 cut(s) 390
Psp124BI GAGCTC 1 cut(s) 49
PvuI CGATCG 1 cut(s) 162
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SacI GAGCTC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 390
Sau3AI GATC 5 cut(s) 32, 62, 159, 286, 422
SduI GDGCHC 1 cut(s) 49
SetI ASST 8 cut(s) 49, 135, 182, 234, 302, 316, 345, 371
SmlI CTYRAG 2 cut(s) 253, 276
SmoI CTYRAG 2 cut(s) 253, 276
Sse9I AATT 3 cut(s) 326, 379, 391
SsiI CCGC 2 cut(s) 25, 281
SspI AATATT 1 cut(s) 246
SstI GAGCTC 1 cut(s) 49
StyI CCWWGG 2 cut(s) 111, 306
TaiI ACGT 2 cut(s) 234, 345
TaqI TCGA 2 cut(s) 105, 262
TasI AATT 3 cut(s) 326, 379, 391
TatI WGTACW 1 cut(s) 249
TfiI GAWTC 2 cut(s) 107, 272
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TspDTI ATGAA 2 cut(s) 91, 407
TspGWI ACGGA 1 cut(s) 280
VspI ATTAAT 1 cut(s) 390
XapI RAATTY 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.