pycom13g11010

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000255
Physical Location & Seq
Forward (+)
7478175 .. 7480238
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g11010.1

Sequence Viewer

Length: 2064 bp
ATGTCGGGTCTCTTCCGTTGTACACCGCACACTCACCTCGGTGACTCGGTCGATCGGCGATTTTTCACAGAGCTCGCAGCCATGGCTCCTCCGACTCTTCTCGGCCCTCCAGAGTTCAGCAAACCCGCACAGACCACCCCACCGTCTCAACCCGAACCCAAATGCGAGCCCAAACCCGCAACAGGCGAACCCTTCGTCGATCTGATGGTCTCCAGTTTCAACAACATATCGATGGAAAAGAAGCCCCCGATGGGCCTGACGGAGAACAACTCCGCCACCTACCTCTCCACCGGCAACCCCTGCCTCGATCTCTTTTTCCACGTGGTGCCGGAAACCCCCGCCGATTACCTGAACGAGCAGCTCCCGCAGGCCTGGGCCCATAACGCGCTGACCACGCTCAAGTTGATTTGCAACCTCCGAGGCGTGCGCGGGACGGGGAAGTCCGACAAGGAGAACTTCCACACGGCGGCGTTTTGGCTTCACGAGCACCACCCCAAAACCCTCGCGTGCAATCTGCAAACGTTTGCGGAGTTCGGGTATTTCAAGGACCTCCCGGAGATTCTCTACCGGCTTCTGGAAGGTGAGGACGTGCGGAGGAACCAGAGGGAGGAGTGGAAGAACCGAAAATCCGGCGGCGGCAAGAAGAGGTGGAATTCGGGTCGGGATCTCGGACCCGAACAACCGATCCCGTTCAAAAAAATCGGGGCGAAAATGGAGAAGAAGGCCGGCAAAAAGAAGGAGATGACGGAAGAAGAAAAGGAAGCGAAGGAAGCGAAGGCGAGGGAGTGGGAAAAGTCGGAAAAGGAAAAGGCGAGCAGGCTGAGGAAGGAGAAGAAGATCGCCATGGCCAAGAAGGCGGTGGCCCGGTACGAGCACGATGCGGATTTCCGGTTCCTGCATGAGCGGGTTTCGGATATCTTTGCCGAGTTCTTGAAGGCCGATATGGAGAATTTGAAGTCGAATCAGAGCAACAAGATCAGCCTCGCGGCAAAGTGGTGCCCTTCGATCGACTCCTCGTTCGATCAGGCCACTCTGATCTGCGAGAGCATCGCGAGGAAGGTGTTCCCGCGCGAATCGTACAAGGAATACGACGGCGTTGAAGAAGCCCATTACGCGTACAAAGTGAGGGACCGCCTGAGGAAGGAAGTGCTGGTGCCGCTGAGGAAGGTTCTTGAGCTGCCAGAGGTGTACATTGGGGTCAACCAGTGGGGTTCGATTCCGTACAACAGGGTGGCTTCCGTGGCGATGAAGAATTACAAGGAGTTCTTCTTGAAGCACGACGAGGAGAGGTTCAAAAAGTACTTGGAGGACGTGAAGGCGGGCAAGGCGAAGATTGCTGCCGGAGCTCTGCTGCCCCATGAGATTATCGGGTCTCTGGAGGACGGCAATGTTGGGCAGGTAGCGGAGCTTCAGTGGAAGAGGATGGTGGAGGATATGTTGAAGTTGGGGAAGATGAAGAACTGCTTGGCTGTGTGTGACGTGTCAATGAGCATGTCAGGGACTCCAATGGAGGTGTCGGTGGCGTTGGGGCTGCTGGTGTCTGAGCTGAGTGAAGAGCCGTGGAAAGGGCTGGTGATCACTTTCAGTGAGAATCCTCAGCTGCATTTGGTGAAAGGGGACGATCTGATGACCAAGTGCCAGTTTGTGAGGAGGATGGATTGGGGTGGGAACACTGATTTCCAGAAGGTGTTTGATTTGCTGCTGAAAGTTGCGGTGAAAGGGAATTTGAAACCGGAGAATATGATCAAGAGGATTTTTGTGTTTAGTGACATGGAGTTTGATCAGGCTTCGGCCAACTGCTGGGAGACGGATTATGAGGTGATACAAAACAAATATAGGAAGAGCGGGTATGGGGATGCGATCCCGCAGCTGGTGTTTTGGAATCTGAGGTACTCGATGTCTACACCGGTGCCTGGGAATCAGCCTGGGGTGGCTCTGCTGAGTGGCTTCTCTAAGAATCTGCTGAAGCTGTTCATGGACAATGATGGGGACATTCAACCGGATGTTTTCATGGAATTAGCCATCTCGGGAGAAGAGTATCAGAAGCTAGTTGTGCACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

688

Amino Acids

78.19

Weight (kDa)

7.55

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 87 - 485 1.6e-137 Domain of unknown function (DUF2828)
DUF7788 PF25043 487 - 665 1.7e-76 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 439
Acc36I ACCTGC 1 cut(s) 1387
AccB1I GGYRCC 4 cut(s) 325, 996, 1153, 1909
AccB7I CCANNNNNTGG 1 cut(s) 1800
AccBSI CCGCTC 2 cut(s) 904, 1845
AccI GTMKAC 1 cut(s) 1901
AccII CGCG 8 cut(s) 386, 429, 506, 986, 1052, 1069, 1071, 1115
AclI AACGTT 1 cut(s) 521
AclWI GGATC 3 cut(s) 672, 679, 1855
AcoI YGGCCR 2 cut(s) 846, 1791
AcsI RAATTY 3 cut(s) 652, 949, 1723
AcuI CTGAAG 2 cut(s) 1394, 1985
AcvI CACGTG 1 cut(s) 322
AdeI CACNNNGTG 1 cut(s) 325
AfaI GTAC 8 cut(s) 22, 869, 1079, 1118, 1190, 1223, 1301, 1892
AflIII ACRYGT 2 cut(s) 1113, 1479
AgeI ACCGGT 1 cut(s) 1906
AjiI CACGTC 3 cut(s) 589, 1312, 1480
AjnI CCWGG 3 cut(s) 371, 1912, 1924
AjuI GAANNNNNNNTTGG 2 cut(s) 1448, 1480
AleI CACNNNNGTG 1 cut(s) 39
AloI GAACNNNNNNTCC 6 cut(s) 611, 643, 669, 701, 875, 907
Alw21I GWGCWC 5 cut(s) 75, 489, 876, 1348, 2058
Alw26I GTCTC 5 cut(s) 14, 150, 214, 1377, 1799
Alw44I GTGCAC 1 cut(s) 2054
AlwI GGATC 3 cut(s) 672, 679, 1855
Ama87I CYCGRG 1 cut(s) 2026
ApaI GGGCCC 1 cut(s) 379
ApaLI GTGCAC 1 cut(s) 2054
ApeKI GCWGC 9 cut(s) 77, 358, 1177, 1337, 1351, 1531, 1600, 1699, 1867
ApoI RAATTY 3 cut(s) 652, 949, 1723
ArsI GACNNNNNNTTYG 6 cut(s) 180, 212, 1001, 1033, 1760, 1792
AsiGI ACCGGT 1 cut(s) 1906
Asp700I GAANNNNTTC 2 cut(s) 1061, 1970
AspLEI GCGC 3 cut(s) 388, 429, 1071
AspS9I GGNCC 8 cut(s) 104, 253, 375, 376, 547, 671, 862, 1129
AsuC2I CCSGG 2 cut(s) 554, 865
AsuHPI GGTGA 7 cut(s) 26, 53, 593, 1585, 1621, 1726, 1831
AvaI CYCGRG 1 cut(s) 2026
AvaII GGWCC 3 cut(s) 547, 671, 1129
AxyI CCTNAGG 1 cut(s) 1136
BaeGI GKGCMC 3 cut(s) 379, 1001, 2058
BalI TGGCCA 1 cut(s) 848
BanI GGYRCC 4 cut(s) 325, 996, 1153, 1909
BanII GRGCYC 4 cut(s) 75, 171, 379, 1348
BarI GAAGNNNNNNTAC 2 cut(s) 1392, 1424
BauI CACGAG 1 cut(s) 482
BbrPI CACGTG 1 cut(s) 322
Bbv12I GWGCWC 5 cut(s) 75, 489, 876, 1348, 2058
BbvCI CCTCAGC 3 cut(s) 821, 1160, 1596
BbvI GCAGC 9 cut(s) 89, 370, 1164, 1324, 1338, 1518, 1587, 1686, 1879
BccI CCATC 7 cut(s) 199, 226, 244, 1417, 1648, 1979, 2030
BceAI ACGGC 4 cut(s) 480, 1108, 1399, 1543
BcgI CGANNNNNNTGC 2 cut(s) 860, 894
BciT130I CCWGG 3 cut(s) 373, 1914, 1926
BclI TGATCA 3 cut(s) 1575, 1743, 1780
BcnI CCSGG 2 cut(s) 554, 865
BcoDI GTCTC 5 cut(s) 14, 150, 214, 1377, 1799
BfaI CTAG 1 cut(s) 2048
BfuAI ACCTGC 1 cut(s) 1387
BglI GCCNNNNNGGC 1 cut(s) 854
BmcAI AGTACT 1 cut(s) 1301
Bme1390I CCNGG 5 cut(s) 373, 554, 865, 1914, 1926
Bme18I GGWCC 3 cut(s) 547, 671, 1129
BmeT110I CYCGRG 1 cut(s) 2026
BmgBI CACGTC 3 cut(s) 589, 1312, 1480
BmgT120I GGNCC 8 cut(s) 104, 253, 375, 376, 547, 671, 862, 1129
BmrFI CCNGG 5 cut(s) 373, 554, 865, 1914, 1926
BmsI GCATC 3 cut(s) 868, 1056, 1846
BplI GAGNNNNNCTC 2 cut(s) 254, 286
BpmI CTGGAG 3 cut(s) 93, 196, 1397
Bpu10I CCTNAGC 3 cut(s) 821, 1160, 1596
BpuEI CTTGAG 2 cut(s) 383, 1193
BpuMI CCSGG 2 cut(s) 554, 865
Bsa29I ATCGAT 1 cut(s) 230
BsaAI YACGTR 1 cut(s) 322
BsaI GGTCTC 3 cut(s) 14, 214, 1377
BsaJI CCNNGG 9 cut(s) 37, 81, 372, 418, 843, 1239, 1559, 1913, 1925
BsaWI WCCGGW 4 cut(s) 888, 1732, 1906, 1999
BsaXI ACNNNNNCTCC 6 cut(s) 521, 551, 1397, 1421, 1427, 1451
Bse118I RCCGGY 4 cut(s) 290, 567, 725, 1906
Bse1I ACTGG 3 cut(s) 213, 1204, 1639
Bse21I CCTNAGG 1 cut(s) 1136
Bse3DI GCAATG 1 cut(s) 1393
BseBI CCWGG 3 cut(s) 373, 1914, 1926
BseCI ATCGAT 1 cut(s) 230
BseDI CCNNGG 9 cut(s) 37, 81, 372, 418, 843, 1239, 1559, 1913, 1925
BseGI GGATG 4 cut(s) 1428, 1659, 1861, 2008
BseMI GCAATG 1 cut(s) 1393
BseMII CTCAG 8 cut(s) 812, 1127, 1151, 1533, 1538, 1610, 1877, 1931
BseNI ACTGG 3 cut(s) 213, 1204, 1639
BseRI GAGGAG 5 cut(s) 78, 623, 1003, 1298, 1663
BseSI GKGCMC 3 cut(s) 379, 1001, 2058
BseXI GCAGC 9 cut(s) 89, 370, 1164, 1324, 1338, 1518, 1587, 1686, 1879
BseYI CCCAGC 1 cut(s) 1800
Bsh1236I CGCG 8 cut(s) 386, 429, 506, 986, 1052, 1069, 1071, 1115
Bsh1285I CGRYCG 3 cut(s) 51, 55, 1008
BshNI GGYRCC 4 cut(s) 325, 996, 1153, 1909
BshTI ACCGGT 1 cut(s) 1906
BshVI ATCGAT 1 cut(s) 230
BsiEI CGRYCG 3 cut(s) 51, 55, 1008
BsiHKAI GWGCWC 5 cut(s) 75, 489, 876, 1348, 2058
BsiHKCI CYCGRG 1 cut(s) 2026
BslFI GGGAC 5 cut(s) 445, 1142, 1513, 1631, 2003
BsmAI GTCTC 5 cut(s) 14, 150, 214, 1377, 1799
BsmBI CGTCTC 2 cut(s) 150, 1799
BsmFI GGGAC 5 cut(s) 445, 1142, 1513, 1631, 2003
Bso31I GGTCTC 3 cut(s) 14, 214, 1377
BsoBI CYCGRG 1 cut(s) 2026
Bsp120I GGGCCC 1 cut(s) 375
Bsp1286I GDGCHC 8 cut(s) 75, 171, 379, 489, 876, 1001, 1348, 2058
Bsp1407I TGTACA 2 cut(s) 20, 1188
Bsp19I CCATGG 2 cut(s) 81, 843
Bsp68I TCGCGA 1 cut(s) 1052
BspCNI CTCAG 8 cut(s) 813, 1128, 1152, 1534, 1539, 1609, 1878, 1932
BspDI ATCGAT 1 cut(s) 230
BspFNI CGCG 8 cut(s) 386, 429, 506, 986, 1052, 1069, 1071, 1115
BspMI ACCTGC 1 cut(s) 1387
BspPI GGATC 3 cut(s) 672, 679, 1855
BspQI GCTCTTC 2 cut(s) 1548, 1835
BspT107I GGYRCC 4 cut(s) 325, 996, 1153, 1909
BspTNI GGTCTC 3 cut(s) 14, 214, 1377
BsrBI CCGCTC 2 cut(s) 904, 1845
BsrDI GCAATG 1 cut(s) 1393
BsrFI RCCGGY 4 cut(s) 290, 567, 725, 1906
BsrGI TGTACA 2 cut(s) 20, 1188
BsrI ACTGG 3 cut(s) 213, 1204, 1639
BssAI RCCGGY 4 cut(s) 290, 567, 725, 1906
BssECI CCNNGG 9 cut(s) 37, 81, 372, 418, 843, 1239, 1559, 1913, 1925
BssSI CACGAG 1 cut(s) 482
BssT1I CCWWGG 2 cut(s) 81, 843
Bst2BI CACGAG 1 cut(s) 482
Bst2UI CCWGG 3 cut(s) 373, 1914, 1926
Bst4CI ACNGT 1 cut(s) 144
Bst6I CTCTTC 7 cut(s) 17, 102, 638, 1412, 1548, 1835, 2028
BstAPI GCANNNNNTGC 1 cut(s) 300
BstAUI TGTACA 2 cut(s) 20, 1188
BstBAI YACGTR 1 cut(s) 322
BstC8I GCNNGC 9 cut(s) 75, 167, 369, 425, 508, 727, 814, 818, 1321
BstDEI CTNAG 9 cut(s) 821, 1136, 1160, 1542, 1547, 1596, 1886, 1940, 1953
BstDSI CCRYGG 4 cut(s) 81, 843, 1239, 1559
BstENI CCTNNNNNAGG 1 cut(s) 1139
BstF5I GGATG 4 cut(s) 1428, 1659, 1861, 2008
BstFNI CGCG 8 cut(s) 386, 429, 506, 986, 1052, 1069, 1071, 1115
BstHHI GCGC 3 cut(s) 388, 429, 1071
BstMAI GTCTC 5 cut(s) 14, 150, 214, 1377, 1799
BstMCI CGRYCG 3 cut(s) 51, 55, 1008
BstNI CCWGG 3 cut(s) 373, 1914, 1926
BstNSI RCATGY 1 cut(s) 1495
BstSCI CCNGG 5 cut(s) 371, 552, 863, 1912, 1924
BstSLI GKGCMC 3 cut(s) 379, 1001, 2058
BstUI CGCG 8 cut(s) 386, 429, 506, 986, 1052, 1069, 1071, 1115
BstV1I GCAGC 9 cut(s) 89, 370, 1164, 1324, 1338, 1518, 1587, 1686, 1879
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
Bsu15I ATCGAT 1 cut(s) 230
Bsu36I CCTNAGG 1 cut(s) 1136
BsuTUI ATCGAT 1 cut(s) 230
BtgI CCRYGG 4 cut(s) 81, 843, 1239, 1559
BtgZI GCGATG 2 cut(s) 1033, 1259
BtrI CACGTC 3 cut(s) 589, 1312, 1480
BtsCI GGATG 4 cut(s) 1428, 1659, 1861, 2008
BtsIMutI CAGTG 4 cut(s) 1211, 1418, 1591, 1671
BtuMI TCGCGA 1 cut(s) 1052
BveI ACCTGC 1 cut(s) 1387
Cac8I GCNNGC 9 cut(s) 75, 167, 369, 425, 508, 727, 814, 818, 1321
CfoI GCGC 3 cut(s) 388, 429, 1071
Cfr10I RCCGGY 4 cut(s) 290, 567, 725, 1906
Cfr13I GGNCC 8 cut(s) 104, 253, 375, 376, 547, 671, 862, 1129
ClaI ATCGAT 1 cut(s) 230
Csp6I GTAC 8 cut(s) 21, 868, 1078, 1117, 1189, 1222, 1300, 1891
CspAI ACCGGT 1 cut(s) 1906
CviAII CATG 8 cut(s) 82, 844, 899, 1358, 1492, 1771, 1975, 2011
CviQI GTAC 8 cut(s) 21, 868, 1078, 1117, 1189, 1222, 1300, 1891
DdeI CTNAG 9 cut(s) 821, 1136, 1160, 1542, 1547, 1596, 1886, 1940, 1953
DraIII CACNNNGTG 1 cut(s) 325
DrdI GACNNNNNNGTC 1 cut(s) 439
DseDI GACNNNNNNGTC 1 cut(s) 439
EaeI YGGCCR 2 cut(s) 846, 1791
Eam1104I CTCTTC 7 cut(s) 17, 102, 638, 1412, 1548, 1835, 2028
EarI CTCTTC 7 cut(s) 17, 102, 638, 1412, 1548, 1835, 2028
EciI GGCGGA 1 cut(s) 262
Ecl136II GAGCTC 2 cut(s) 73, 1346
Eco130I CCWWGG 2 cut(s) 81, 843
Eco147I AGGCCT 1 cut(s) 371
Eco24I GRGCYC 4 cut(s) 75, 171, 379, 1348
Eco31I GGTCTC 3 cut(s) 14, 214, 1377
Eco32I GATATC 1 cut(s) 916
Eco47I GGWCC 3 cut(s) 547, 671, 1129
Eco53kI GAGCTC 2 cut(s) 73, 1346
Eco57I CTGAAG 2 cut(s) 1394, 1985
Eco72I CACGTG 1 cut(s) 322
Eco81I CCTNAGG 1 cut(s) 1136
Eco88I CYCGRG 1 cut(s) 2026
EcoICRI GAGCTC 2 cut(s) 73, 1346
EcoNI CCTNNNNNAGG 1 cut(s) 1139
EcoO109I RGGNCCY 1 cut(s) 547
EcoRI GAATTC 1 cut(s) 652
EcoRII CCWGG 3 cut(s) 371, 1912, 1924
EcoRV GATATC 1 cut(s) 916
EcoT14I CCWWGG 2 cut(s) 81, 843
EcoT38I GRGCYC 4 cut(s) 75, 171, 379, 1348
ErhI CCWWGG 2 cut(s) 81, 843
Esp3I CGTCTC 2 cut(s) 150, 1799
FaeI CATG 8 cut(s) 85, 847, 902, 1361, 1495, 1774, 1978, 2014
FalI AAGNNNNNCTT 6 cut(s) 440, 472, 1250, 1282, 1448, 1480
FaqI GGGAC 5 cut(s) 445, 1142, 1513, 1631, 2003
FatI CATG 8 cut(s) 81, 843, 898, 1357, 1491, 1770, 1974, 2010
FbaI TGATCA 3 cut(s) 1575, 1743, 1780
FblI GTMKAC 1 cut(s) 1901
FokI GGATG 4 cut(s) 1435, 1666, 1868, 2015
FriOI GRGCYC 4 cut(s) 75, 171, 379, 1348
FspBI CTAG 1 cut(s) 2048
GlaI GCGC 3 cut(s) 387, 428, 1070
GsaI CCCAGC 1 cut(s) 1804
GsuI CTGGAG 3 cut(s) 93, 196, 1397
HhaI GCGC 3 cut(s) 388, 429, 1071
Hin1II CATG 8 cut(s) 85, 847, 902, 1361, 1495, 1774, 1978, 2014
Hin6I GCGC 3 cut(s) 386, 427, 1069
HinP1I GCGC 3 cut(s) 386, 427, 1069
HincII GTYRAC 1 cut(s) 1201
HindII GTYRAC 1 cut(s) 1201
HphI GGTGA 7 cut(s) 26, 53, 593, 1585, 1621, 1726, 1831
Hpy166II GTNNAC 5 cut(s) 23, 1189, 1201, 1902, 2056
Hpy8I GTNNAC 5 cut(s) 23, 1189, 1201, 1902, 2056
Hpy99I CGWCG 3 cut(s) 200, 1094, 1283
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 5 cut(s) 321, 521, 588, 1311, 1479
HpyCH4V TGCA 6 cut(s) 411, 510, 517, 898, 1603, 2056
HpyF3I CTNAG 9 cut(s) 821, 1136, 1160, 1542, 1547, 1596, 1886, 1940, 1953
HpySE526I ACGT 5 cut(s) 321, 521, 588, 1311, 1479
Hsp92II CATG 8 cut(s) 85, 847, 902, 1361, 1495, 1774, 1978, 2014
HspAI GCGC 3 cut(s) 386, 427, 1069
KroI GCCGGC 1 cut(s) 725
KroNI GCCGGC 1 cut(s) 727
Ksp22I TGATCA 3 cut(s) 1575, 1743, 1780
LguI GCTCTTC 2 cut(s) 1548, 1835
LmnI GCTCC 4 cut(s) 91, 366, 1343, 1405
Lsp1109I GCAGC 9 cut(s) 89, 370, 1164, 1324, 1338, 1518, 1587, 1686, 1879
LweI GCATC 3 cut(s) 868, 1056, 1846
MaeI CTAG 1 cut(s) 2048
MaeII ACGT 5 cut(s) 321, 521, 588, 1311, 1479
MaeIII GTNAC 3 cut(s) 41, 1475, 1766
MbiI CCGCTC 2 cut(s) 904, 1845
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 8 cut(s) 75, 171, 379, 489, 876, 1001, 1348, 2058
MlsI TGGCCA 1 cut(s) 848
MluCI AATT 5 cut(s) 652, 949, 1252, 1723, 2015
MluI ACGCGT 1 cut(s) 1113
MluNI TGGCCA 1 cut(s) 848
MlyI GAGTC 4 cut(s) 38, 88, 1004, 1495
MmeI TCCRAC 3 cut(s) 116, 468, 777
Mox20I TGGCCA 1 cut(s) 848
MroNI GCCGGC 1 cut(s) 725
MroXI GAANNNNTTC 2 cut(s) 1061, 1970
MscI TGGCCA 1 cut(s) 848
MslI CAYNNNNRTG 2 cut(s) 39, 230
Msp20I TGGCCA 1 cut(s) 848
MspA1I CMGCKG 3 cut(s) 1159, 1600, 1870
MspR9I CCNGG 5 cut(s) 373, 554, 865, 1914, 1926
MvaI CCWGG 3 cut(s) 373, 1914, 1926
MvnI CGCG 8 cut(s) 386, 429, 506, 986, 1052, 1069, 1071, 1115
NaeI GCCGGC 1 cut(s) 727
NciI CCSGG 2 cut(s) 554, 865
NcoI CCATGG 2 cut(s) 81, 843
NgoMIV GCCGGC 1 cut(s) 725
NlaIII CATG 8 cut(s) 85, 847, 902, 1361, 1495, 1774, 1978, 2014
NmeAIII GCCGAG 2 cut(s) 81, 949
NmuCI GTSAC 3 cut(s) 41, 1475, 1766
NruI TCGCGA 1 cut(s) 1052
NspI RCATGY 1 cut(s) 1495
OliI CACNNNNGTG 1 cut(s) 39
PceI AGGCCT 1 cut(s) 371
PciSI GCTCTTC 2 cut(s) 1548, 1835
PdiI GCCGGC 1 cut(s) 727
PdmI GAANNNNTTC 2 cut(s) 1061, 1970
PfeI GAWTC 8 cut(s) 559, 961, 1073, 1216, 1591, 1882, 1918, 1957
PflFI GACNNNGTC 1 cut(s) 47
PflMI CCANNNNNTGG 1 cut(s) 1800
PfoI TCCNGGA 1 cut(s) 552
PinAI ACCGGT 1 cut(s) 1906
Ple19I CGATCG 2 cut(s) 55, 1008
PleI GAGTC 4 cut(s) 38, 88, 1004, 1495
PmaCI CACGTG 1 cut(s) 322
PmlI CACGTG 1 cut(s) 322
PpsI GAGTC 4 cut(s) 38, 88, 1004, 1495
Ppu21I YACGTR 1 cut(s) 322
PpuMI RGGWCCY 1 cut(s) 547
Psp124BI GAGCTC 2 cut(s) 75, 1348
Psp1406I AACGTT 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 547
Psp6I CCWGG 3 cut(s) 371, 1912, 1924
PspCI CACGTG 1 cut(s) 322
PspFI CCCAGC 1 cut(s) 1800
PspGI CCWGG 3 cut(s) 371, 1912, 1924
PspOMI GGGCCC 1 cut(s) 375
PspPI GGNCC 8 cut(s) 104, 253, 375, 376, 547, 671, 862, 1129
PspPPI RGGWCCY 1 cut(s) 547
PsuI RGATCY 1 cut(s) 664
PsyI GACNNNGTC 1 cut(s) 47
PvuI CGATCG 2 cut(s) 55, 1008
PvuII CAGCTG 2 cut(s) 1600, 1870
RruI TCGCGA 1 cut(s) 1052
RsaI GTAC 8 cut(s) 22, 869, 1079, 1118, 1190, 1223, 1301, 1892
RsaNI GTAC 8 cut(s) 21, 868, 1078, 1117, 1189, 1222, 1300, 1891
RseI CAYNNNNRTG 2 cut(s) 39, 230
SacI GAGCTC 2 cut(s) 75, 1348
SapI GCTCTTC 2 cut(s) 1548, 1835
Sau96I GGNCC 8 cut(s) 104, 253, 375, 376, 547, 671, 862, 1129
ScaI AGTACT 1 cut(s) 1301
SchI GAGTC 4 cut(s) 38, 88, 1004, 1495
ScrFI CCNGG 5 cut(s) 373, 554, 865, 1914, 1926
SduI GDGCHC 8 cut(s) 75, 171, 379, 489, 876, 1001, 1348, 2058
SfaNI GCATC 3 cut(s) 868, 1056, 1846
SgrAI CRCCGGYG 1 cut(s) 1906
SinI GGWCC 3 cut(s) 547, 671, 1129
SmiMI CAYNNNNRTG 2 cut(s) 39, 230
SmlI CTYRAG 2 cut(s) 398, 1172
SmoI CTYRAG 2 cut(s) 398, 1172
Sse9I AATT 5 cut(s) 652, 949, 1252, 1723, 2015
SseBI AGGCCT 1 cut(s) 371
SspMI CTAG 1 cut(s) 2048
SstI GAGCTC 2 cut(s) 75, 1348
StuI AGGCCT 1 cut(s) 371
StyD4I CCNGG 5 cut(s) 371, 552, 863, 1912, 1924
StyI CCWWGG 2 cut(s) 81, 843
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 5 cut(s) 324, 524, 591, 1314, 1482
TaqII GACCGA 1 cut(s) 37
TasI AATT 5 cut(s) 652, 949, 1252, 1723, 2015
TatI WGTACW 3 cut(s) 20, 1188, 1299
TauI GCSGC 5 cut(s) 470, 636, 639, 989, 1159
TfiI GAWTC 8 cut(s) 559, 961, 1073, 1216, 1591, 1882, 1918, 1957
TscAI CASTG 4 cut(s) 1211, 1418, 1591, 1678
TseFI GTSAC 3 cut(s) 41, 1475, 1766
TseI GCWGC 9 cut(s) 77, 358, 1177, 1337, 1351, 1531, 1600, 1699, 1867
Tsp45I GTSAC 3 cut(s) 41, 1475, 1766
TspDTI ATGAA 4 cut(s) 1262, 1469, 1963, 1999
TspGWI ACGGA 6 cut(s) 5, 275, 761, 1209, 1228, 1823
TspRI CASTG 4 cut(s) 1211, 1418, 1591, 1678
Tth111I GACNNNGTC 1 cut(s) 47
Van91I CCANNNNNTGG 1 cut(s) 1800
VneI GTGCAC 1 cut(s) 2054
VpaK11BI GGWCC 3 cut(s) 547, 671, 1129
XagI CCTNNNNNAGG 1 cut(s) 1139
XapI RAATTY 3 cut(s) 652, 949, 1723
XceI RCATGY 1 cut(s) 1495
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XmiI GTMKAC 1 cut(s) 1901
XmnI GAANNNNTTC 2 cut(s) 1061, 1970
XspI CTAG 1 cut(s) 2048
ZrmI AGTACT 1 cut(s) 1301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.