Rmu_ssc0000289.1_g000007

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000289.1
OG0000255
Physical Location & Seq
Forward (+)
32139 .. 33017
879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000289.1_g000007.1.cds

Sequence Viewer

Length: 879 bp
atgaagccacaaatcctctcaattctcaaaggcgccaaaccaaaccaaaaccatgtcaacttggcaagaacccaaagtcctactcttcttctcggtcctccagagatcggaacagtacccaccaccaatgctccaccacaagtcaattacggcgaccccttcatggatctcatggtctccaattacaacaacaccacgtcaacttccccccgacccccaatgggtttgaccgagaacagttcgcctacttttctcacctccggcaacccctgccttgattttttcttccacgtggtgcctgacaccaagcctgaatatttcaaccaacagctcccattggcttggtccaacgatgccgtaaccgctctcaagctcatctgcaacctgcgaggtgtacgtggcaccggaaagtgtgacaaagaagggttctacacagcagcgtattggctctacaaccaccaccctaaaaccctagcttacaatgtagcgtcggttgccgcttttgggtatttcaaagatctgccggagattctataccgccttctagaaggccaagacatcaggaagacccaaaaggaagagtggcaaaggatcaagcgctatttctataaggggccgggtaaggtagacgggttaaggtcactaaagcttgggcatttaatgggtccggcggatcatccacctagagatgttaaactgctgaggctttgggagaaactcatcgccgtcaaatctaacaagaaaaaactcgagaaggaggagtataaaactgttcaagcagaatgggcagcggatagagacgaactgaaaagtgatgaagctagagaactgatgcatcaaaagatcatagacaagaccaagaatgccgtggctaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

292

Amino Acids

33.14

Weight (kDa)

9.33

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 393
AccB1I GGYRCC 3 cut(s) 32, 295, 401
AccBSI CCGCTC 1 cut(s) 365
AccI GTMKAC 1 cut(s) 627
AciI CCGC 5 cut(s) 363, 498, 538, 671, 791
AclWI GGATC 3 cut(s) 174, 599, 681
AcvI CACGTG 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 33
AdeI CACNNNGTG 1 cut(s) 295
AfaI GTAC 2 cut(s) 117, 396
AfeI AGCGCT 1 cut(s) 599
AfiI CCNNNNNNNGG 5 cut(s) 107, 163, 221, 504, 873
AgsI TTSAA 3 cut(s) 322, 514, 776
AjiI CACGTC 1 cut(s) 198
AloI GAACNNNNNNTCC 2 cut(s) 61, 93
AluBI AGCT 5 cut(s) 331, 373, 476, 649, 821
AluI AGCT 5 cut(s) 331, 373, 476, 649, 821
Alw26I GTCTC 2 cut(s) 181, 792
AlwI GGATC 3 cut(s) 174, 599, 681
Ama87I CYCGRG 1 cut(s) 749
Aor51HI AGCGCT 1 cut(s) 599
AoxI GGCC 2 cut(s) 550, 614
ApeKI GCWGC 2 cut(s) 437, 788
AspLEI GCGC 2 cut(s) 35, 600
AspS9I GGNCC 4 cut(s) 95, 345, 614, 665
AsuC2I CCSGG 1 cut(s) 618
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 749
AvaII GGWCC 3 cut(s) 95, 345, 665
BanI GGYRCC 3 cut(s) 32, 295, 401
BbrPI CACGTG 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 572
BbvCI CCTCAGC 1 cut(s) 701
BbvI GCAGC 2 cut(s) 449, 800
BceAI ACGGC 4 cut(s) 166, 341, 710, 851
BcnI CCSGG 1 cut(s) 618
BcoDI GTCTC 2 cut(s) 181, 792
BfaI CTAG 5 cut(s) 473, 545, 684, 822, 873
BfoI RGCGCY 2 cut(s) 36, 601
BfuAI ACCTGC 1 cut(s) 393
BglII AGATCT 1 cut(s) 517
BisI GCNGC 3 cut(s) 438, 498, 789
BlsI GCNGC 3 cut(s) 439, 499, 790
Bme1390I CCNGG 1 cut(s) 618
Bme18I GGWCC 3 cut(s) 95, 345, 665
BmeT110I CYCGRG 1 cut(s) 749
BmgBI CACGTC 1 cut(s) 198
BmgT120I GGNCC 4 cut(s) 95, 345, 614, 665
BmiI GGNNCC 5 cut(s) 34, 297, 403, 615, 666
BmrFI CCNGG 1 cut(s) 618
BmsI GCATC 3 cut(s) 343, 822, 844
BpiI GAAGAC 1 cut(s) 572
BpmI CTGGAG 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 701
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 1 cut(s) 618
BsaAI YACGTR 2 cut(s) 292, 398
BsaHI GRCGYC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 867
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 5 cut(s) 107, 163, 221, 504, 873
BseDI CCNNGG 1 cut(s) 867
BseGI GGATG 1 cut(s) 676
BseLI CCNNNNNNNGG 5 cut(s) 107, 163, 221, 504, 873
BseMII CTCAG 1 cut(s) 692
BseRI GAGGAG 1 cut(s) 773
BseXI GCAGC 2 cut(s) 449, 800
BshFI GGCC 2 cut(s) 552, 616
BshNI GGYRCC 3 cut(s) 32, 295, 401
BsiHKCI CYCGRG 1 cut(s) 749
BsiSI CCGG 5 cut(s) 261, 405, 524, 617, 668
BslI CCNNNNNNNGG 5 cut(s) 107, 163, 221, 504, 873
BsmAI GTCTC 2 cut(s) 181, 792
BsmBI CGTCTC 1 cut(s) 792
BsmI GAATGC 1 cut(s) 868
BsnI GGCC 2 cut(s) 552, 616
Bso31I GGTCTC 1 cut(s) 181
BsoBI CYCGRG 1 cut(s) 749
Bsp143I GATC 6 cut(s) 105, 166, 517, 591, 673, 843
BspACI CCGC 5 cut(s) 363, 498, 538, 671, 791
BspANI GGCC 2 cut(s) 552, 616
BspCNI CTCAG 1 cut(s) 693
BspLI GGNNCC 5 cut(s) 34, 297, 403, 615, 666
BspMI ACCTGC 1 cut(s) 393
BspPI GGATC 3 cut(s) 174, 599, 681
BspT107I GGYRCC 3 cut(s) 32, 295, 401
BspTNI GGTCTC 1 cut(s) 181
BsrBI CCGCTC 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 867
BssMI GATC 6 cut(s) 105, 166, 517, 591, 673, 843
BssNI GRCGYC 1 cut(s) 33
Bst4CI ACNGT 3 cut(s) 115, 239, 772
Bst6I CTCTTC 2 cut(s) 90, 573
BstACI GRCGYC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 270
BstBAI YACGTR 2 cut(s) 292, 398
BstDEI CTNAG 1 cut(s) 701
BstDSI CCRYGG 1 cut(s) 867
BstF5I GGATG 1 cut(s) 676
BstH2I RGCGCY 2 cut(s) 36, 601
BstHHI GCGC 2 cut(s) 35, 600
BstKTI GATC 6 cut(s) 108, 169, 520, 594, 676, 846
BstMAI GTCTC 2 cut(s) 181, 792
BstMBI GATC 6 cut(s) 105, 166, 517, 591, 673, 843
BstMWI GCNNNNNNNGC 4 cut(s) 270, 362, 494, 785
BstSCI CCNGG 1 cut(s) 616
BstV1I GCAGC 2 cut(s) 449, 800
BstV2I GAAGAC 1 cut(s) 572
BstX2I RGATCY 2 cut(s) 166, 517
BstXI CCANNNNNNTGG 1 cut(s) 342
BstYI RGATCY 2 cut(s) 166, 517
BsuRI GGCC 2 cut(s) 552, 616
BtgI CCRYGG 1 cut(s) 867
BtgZI GCGATG 1 cut(s) 706
BtrI CACGTC 1 cut(s) 198
BtsCI GGATG 1 cut(s) 676
BveI ACCTGC 1 cut(s) 393
CfoI GCGC 2 cut(s) 35, 600
Cfr13I GGNCC 4 cut(s) 95, 345, 614, 665
CseI GACGC 1 cut(s) 477
Csp6I GTAC 2 cut(s) 116, 395
CviAII CATG 3 cut(s) 53, 163, 172
CviQI GTAC 2 cut(s) 116, 395
DdeI CTNAG 1 cut(s) 701
DinI GGCGCC 1 cut(s) 34
DpnI GATC 6 cut(s) 107, 168, 519, 593, 675, 845
DpnII GATC 6 cut(s) 105, 166, 517, 591, 673, 843
DraIII CACNNNGTG 1 cut(s) 295
Eam1104I CTCTTC 2 cut(s) 90, 573
EarI CTCTTC 2 cut(s) 90, 573
EciI GGCGGA 1 cut(s) 686
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 3 cut(s) 95, 345, 665
Eco47III AGCGCT 1 cut(s) 599
Eco72I CACGTG 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 749
EcoT22I ATGCAT 1 cut(s) 837
EgeI GGCGCC 1 cut(s) 34
EheI GGCGCC 1 cut(s) 34
Esp3I CGTCTC 1 cut(s) 792
FaeI CATG 3 cut(s) 56, 166, 175
FaiI YATR 7 cut(s) 54, 164, 173, 535, 609, 765, 848
FatI CATG 3 cut(s) 52, 162, 171
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 3 cut(s) 438, 498, 789
FokI GGATG 1 cut(s) 663
Fsp4HI GCNGC 3 cut(s) 438, 498, 789
FspBI CTAG 5 cut(s) 473, 545, 684, 822, 873
GlaI GCGC 2 cut(s) 34, 599
GluI GCNGC 3 cut(s) 438, 498, 789
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 2 cut(s) 36, 601
HaeIII GGCC 2 cut(s) 552, 616
HapII CCGG 5 cut(s) 261, 405, 524, 617, 668
HgaI GACGC 1 cut(s) 477
HhaI GCGC 2 cut(s) 35, 600
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 3 cut(s) 56, 166, 175
Hin6I GCGC 2 cut(s) 33, 598
HinP1I GCGC 2 cut(s) 33, 598
HincII GTYRAC 2 cut(s) 58, 201
HindII GTYRAC 2 cut(s) 58, 201
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 1 cut(s) 529
HpaII CCGG 5 cut(s) 261, 405, 524, 617, 668
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 4 cut(s) 58, 201, 395, 628
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 4 cut(s) 101, 545, 562, 751
Hpy8I GTNNAC 4 cut(s) 58, 201, 395, 628
Hpy99I CGWCG 1 cut(s) 493
HpyAV CCTTC 5 cut(s) 169, 416, 542, 551, 748
HpyCH4III ACNGT 3 cut(s) 115, 239, 772
HpyCH4IV ACGT 3 cut(s) 197, 291, 397
HpyCH4V TGCA 2 cut(s) 381, 835
HpyF10VI GCNNNNNNNGC 4 cut(s) 270, 362, 494, 785
HpyF3I CTNAG 1 cut(s) 701
HpySE526I ACGT 3 cut(s) 197, 291, 397
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 3 cut(s) 56, 166, 175
HspAI GCGC 2 cut(s) 33, 598
KasI GGCGCC 1 cut(s) 32
Kzo9I GATC 6 cut(s) 105, 166, 517, 591, 673, 843
LmnI GCTCC 2 cut(s) 136, 336
Lsp1109I GCAGC 2 cut(s) 449, 800
LweI GCATC 3 cut(s) 343, 822, 844
MaeI CTAG 5 cut(s) 473, 545, 684, 822, 873
MaeII ACGT 3 cut(s) 197, 291, 397
MaeIII GTNAC 3 cut(s) 358, 413, 639
MalI GATC 6 cut(s) 107, 168, 519, 593, 675, 845
MbiI CCGCTC 1 cut(s) 365
MboI GATC 6 cut(s) 105, 166, 517, 591, 673, 843
MboII GAAGA 5 cut(s) 77, 80, 277, 577, 590
MflI RGATCY 2 cut(s) 166, 517
MluCI AATT 3 cut(s) 21, 145, 181
Mly113I GGCGCC 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 6 cut(s) 26, 108, 268, 383, 696, 751
Mph1103I ATGCAT 1 cut(s) 837
MseI TTAA 3 cut(s) 635, 659, 693
MspA1I CMGCKG 1 cut(s) 791
MspI CCGG 5 cut(s) 261, 405, 524, 617, 668
MspR9I CCNGG 1 cut(s) 618
Mva1269I GAATGC 1 cut(s) 868
MwoI GCNNNNNNNGC 4 cut(s) 270, 362, 494, 785
NarI GGCGCC 1 cut(s) 33
NciI CCSGG 1 cut(s) 618
NdeII GATC 6 cut(s) 105, 166, 517, 591, 673, 843
NlaIII CATG 3 cut(s) 56, 166, 175
NlaIV GGNNCC 5 cut(s) 34, 297, 403, 615, 666
NmuCI GTSAC 2 cut(s) 413, 639
NsiI ATGCAT 1 cut(s) 837
PaeR7I CTCGAG 1 cut(s) 749
PctI GAATGC 1 cut(s) 868
PfeI GAWTC 1 cut(s) 529
PkrI GCNGC 3 cut(s) 439, 499, 790
PluTI GGCGCC 1 cut(s) 36
PmaCI CACGTG 1 cut(s) 292
PmlI CACGTG 1 cut(s) 292
Ppu21I YACGTR 2 cut(s) 292, 398
PspCI CACGTG 1 cut(s) 292
PspN4I GGNNCC 5 cut(s) 34, 297, 403, 615, 666
PspPI GGNCC 4 cut(s) 95, 345, 614, 665
PsuI RGATCY 2 cut(s) 166, 517
RsaI GTAC 2 cut(s) 117, 396
RsaNI GTAC 2 cut(s) 116, 395
SaqAI TTAA 3 cut(s) 635, 659, 693
SatI GCNGC 3 cut(s) 438, 498, 789
Sau3AI GATC 6 cut(s) 105, 166, 517, 591, 673, 843
Sau96I GGNCC 4 cut(s) 95, 345, 614, 665
ScrFI CCNGG 1 cut(s) 618
SfaNI GCATC 3 cut(s) 343, 822, 844
SfoI GGCGCC 1 cut(s) 34
Sfr274I CTCGAG 1 cut(s) 749
SinI GGWCC 3 cut(s) 95, 345, 665
SlaI CTCGAG 1 cut(s) 749
SmlI CTYRAG 2 cut(s) 368, 749
SmoI CTYRAG 2 cut(s) 368, 749
Sse9I AATT 3 cut(s) 21, 145, 181
SsiI CCGC 5 cut(s) 363, 498, 538, 671, 791
SspDI GGCGCC 1 cut(s) 32
SspI AATATT 1 cut(s) 317
SspMI CTAG 5 cut(s) 473, 545, 684, 822, 873
StyD4I CCNGG 1 cut(s) 616
TaaI ACNGT 3 cut(s) 115, 239, 772
TaiI ACGT 3 cut(s) 200, 294, 400
TaqI TCGA 1 cut(s) 750
TaqII GACCGA 2 cut(s) 83, 245
TasI AATT 3 cut(s) 21, 145, 181
TauI GCSGC 1 cut(s) 500
TfiI GAWTC 1 cut(s) 529
Tru1I TTAA 3 cut(s) 635, 659, 693
Tru9I TTAA 3 cut(s) 635, 659, 693
TseFI GTSAC 2 cut(s) 413, 639
TseI GCWGC 2 cut(s) 437, 788
Tsp45I GTSAC 2 cut(s) 413, 639
TspDTI ATGAA 3 cut(s) 17, 151, 831
VpaK11BI GGWCC 3 cut(s) 95, 345, 665
XbaI TCTAGA 1 cut(s) 544
XcmI CCANNNNNNNNNTGG 1 cut(s) 865
XhoI CTCGAG 1 cut(s) 749
XmiI GTMKAC 1 cut(s) 627
XspI CTAG 5 cut(s) 473, 545, 684, 822, 873
Zsp2I ATGCAT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.