MD06G1164600.v1.1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000255
Physical Location & Seq
Forward (+)
30496470 .. 30497660
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1164600.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGAGATTGACGGCTTATCCGAACTCTTCGACTCTTGTTGTTCCTCCGAACCTTAGAATTCCCAGCAGATCACTCTCTCTGATGGTTATGAAATTCCAGAATGGGACAGCTCCAGCCAAGAGAACAGCAATGAGCACTAGTAGGAGTAGGAGCAGAACCCCTCTAATGGTAATGGGATTCAGTACTACTGAATCTACCTTCCAACTCTCCTCGGCCGACCCCTGCCTTGATATATTTTTCAACATCGTCGAACCAGCCGACTATGTAAACTACGGGCACTACGTGTTTGCAACTGGATCGATCAAAAGGCATCCACCAGCCGTAAAGGCGGAGGTGGAGGCCTCCTGTGAATATCTCAGGCAACTGCTGCCGCTGGCATGGTCCGACAATCCCCTAACCACCCTCAAACTCATATGTCACCTAAATGACTTTAATGGAAAATCCTATGAACAAGCGTTCTACACGGCGGCGGTTTGGCTCCACCAAAACCACCCCAAGACCCTGTTGTGCAACGTTGCATCTTTTGGGAATATGTGCTTGCATAGCCTTGCAGAGATTCTGCACCGCCTCCTACAAGGCCAAGACGGTAGATGGGGGAGAGTAGAGCCCCTCGGGAAACTGACCAAAAGGGCTGTAGAGATGTACGAGGGTGACCCGGATTATAAGTTGTTACATGACCGTGTTACCGATGTTTTTGTGAAGTGCTTGGAGTCAGATATTCAAAAATTGAAGGGCCAATTCAAGCATGATTACCTTAAATATTATGTGCGTGAAGACATCGATGATGATGGTGGTGGTGATGATGATCAGAAGTATGCCGAGGTAACCCATGCTGCAGACTGCTTCCTTTCCGGAAACCATGACGAATCCCGTGCTCCACGGGCCACTTTGCTGTGGGAAAGCGTTGCGCGGAAGGTTTTCCCACCAGCATCATACGCGGAGGAATACAACGAAGACTACGAGAGCAGAGTTGTAGACCGGCTGAGGAAAGAGGTTTTGGCTCCCTTATACAAGTACTCCTGTAGTGGCTACAACGGGTGGAAGAGCTGGGAGATTAAGGAGGAGAAAGGACAAGTTTTGTTCAAGGATATTTGGGACAGAGAAAAAGGTTGGAAAGTTGACCGGCAGAACCATGTCATGGAAGCAGCCATCTCCGGCAAAGAGTATCAAAGTCTCGTTGTTGTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

397

Amino Acids

45.25

Weight (kDa)

6.33

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 69 - 176 6.4e-19 Domain of unknown function (DUF2828)
DUF2828 PF11443 205 - 338 7.8e-12 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AccB7I CCANNNNNTGG 1 cut(s) 1138
AccI GTMKAC 1 cut(s) 975
AccII CGCG 2 cut(s) 910, 938
AccIII TCCGGA 1 cut(s) 851
AciI CCGC 7 cut(s) 329, 371, 467, 470, 565, 910, 938
AclI AACGTT 1 cut(s) 513
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 2 cut(s) 57, 92
AdeI CACNNNGTG 1 cut(s) 283
AfaI GTAC 3 cut(s) 184, 644, 1016
AfiI CCNNNNNNNGG 2 cut(s) 166, 1138
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 5 cut(s) 241, 722, 730, 742, 1084
AhlI ACTAGT 1 cut(s) 137
AjuI GAANNNNNNNTTGG 2 cut(s) 980, 1012
AluBI AGCT 2 cut(s) 110, 1047
AluI AGCT 2 cut(s) 110, 1047
Alw21I GWGCWC 2 cut(s) 137, 877
Alw26I GTCTC 1 cut(s) 1178
AlwI GGATC 1 cut(s) 304
Ama87I CYCGRG 1 cut(s) 611
Aor13HI TCCGGA 1 cut(s) 851
AoxI GGCC 5 cut(s) 213, 339, 577, 733, 882
ApeKI GCWGC 3 cut(s) 367, 833, 1145
ApoI RAATTY 2 cut(s) 57, 92
Asp700I GAANNNNTTC 1 cut(s) 917
AspLEI GCGC 1 cut(s) 910
AspS9I GGNCC 3 cut(s) 381, 733, 882
AsuC2I CCSGG 1 cut(s) 656
AsuHPI GGTGA 3 cut(s) 410, 662, 809
AvaI CYCGRG 1 cut(s) 611
AvaII GGWCC 1 cut(s) 381
BaeGI GKGCMC 1 cut(s) 279
BanII GRGCYC 1 cut(s) 609
BbsI GAAGAC 2 cut(s) 780, 960
Bbv12I GWGCWC 2 cut(s) 137, 877
BbvCI CCTCAGC 1 cut(s) 983
BbvI GCAGC 3 cut(s) 354, 820, 1157
BccI CCATC 4 cut(s) 76, 585, 782, 1157
BceAI ACGGC 3 cut(s) 27, 305, 480
BcgI CGANNNNNNTGC 4 cut(s) 279, 313, 854, 888
BclI TGATCA 1 cut(s) 805
BcnI CCSGG 1 cut(s) 656
BcoDI GTCTC 1 cut(s) 1178
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 3 cut(s) 633, 834, 1021
BglI GCCNNNNNGGC 1 cut(s) 326
BisI GCNGC 5 cut(s) 368, 371, 468, 834, 1146
BlsI GCNGC 5 cut(s) 369, 372, 469, 835, 1147
BmcAI AGTACT 2 cut(s) 184, 1016
Bme1390I CCNGG 1 cut(s) 656
Bme18I GGWCC 1 cut(s) 381
BmeT110I CYCGRG 1 cut(s) 611
BmgT120I GGNCC 3 cut(s) 381, 733, 882
BmiI GGNNCC 2 cut(s) 479, 1002
BmrFI CCNGG 1 cut(s) 656
BmsI GCATC 3 cut(s) 319, 527, 938
BpiI GAAGAC 2 cut(s) 780, 960
BpmI CTGGAG 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 983
BpuMI CCSGG 1 cut(s) 656
Bsa29I ATCGAT 2 cut(s) 299, 780
BsaAI YACGTR 1 cut(s) 283
BsaBI GATNNNNATC 1 cut(s) 804
BsaJI CCNNGG 4 cut(s) 210, 610, 819, 878
BsaWI WCCGGW 1 cut(s) 851
BsaXI ACNNNNNCTCC 2 cut(s) 1001, 1031
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 1138
Bse118I RCCGGY 2 cut(s) 978, 1122
Bse1I ACTGG 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 135
Bse8I GATNNNNATC 1 cut(s) 804
BseAI TCCGGA 1 cut(s) 851
BseCI ATCGAT 2 cut(s) 299, 780
BseDI CCNNGG 4 cut(s) 210, 610, 819, 878
BseGI GGATG 1 cut(s) 310
BseJI GATNNNNATC 1 cut(s) 804
BseLI CCNNNNNNNGG 2 cut(s) 166, 1138
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 2 cut(s) 370, 974
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 2 cut(s) 199, 1076
BseSI GKGCMC 1 cut(s) 279
BseX3I CGGCCG 1 cut(s) 213
BseXI GCAGC 3 cut(s) 354, 820, 1157
BseYI CCCAGC 2 cut(s) 62, 1047
BsgI GTGCAG 1 cut(s) 545
Bsh1236I CGCG 2 cut(s) 910, 938
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 5 cut(s) 215, 341, 579, 735, 884
BshVI ATCGAT 2 cut(s) 299, 780
BsiEI CGRYCG 1 cut(s) 216
BsiHKAI GWGCWC 2 cut(s) 137, 877
BsiHKCI CYCGRG 1 cut(s) 611
BsiSI CCGG 5 cut(s) 656, 852, 979, 1123, 1155
BslFI GGGAC 2 cut(s) 118, 1109
BslI CCNNNNNNNGG 2 cut(s) 166, 1138
BsmAI GTCTC 1 cut(s) 1178
BsmFI GGGAC 2 cut(s) 118, 1109
BsnI GGCC 5 cut(s) 215, 341, 579, 735, 884
BsoBI CYCGRG 1 cut(s) 611
Bsp1286I GDGCHC 4 cut(s) 137, 279, 609, 877
Bsp13I TCCGGA 1 cut(s) 851
Bsp143I GATC 4 cut(s) 68, 296, 300, 805
BspACI CCGC 7 cut(s) 329, 371, 467, 470, 565, 910, 938
BspANI GGCC 5 cut(s) 215, 341, 579, 735, 884
BspCNI CTCAG 2 cut(s) 369, 975
BspDI ATCGAT 2 cut(s) 299, 780
BspEI TCCGGA 1 cut(s) 851
BspFNI CGCG 2 cut(s) 910, 938
BspLI GGNNCC 2 cut(s) 479, 1002
BspMAI CTGCAG 1 cut(s) 838
BspPI GGATC 1 cut(s) 304
BspQI GCTCTTC 1 cut(s) 1037
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 2 cut(s) 978, 1122
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 2 cut(s) 978, 1122
BssECI CCNNGG 4 cut(s) 210, 610, 819, 878
BssMI GATC 4 cut(s) 68, 296, 300, 805
Bst4CI ACNGT 2 cut(s) 587, 680
Bst6I CTCTTC 2 cut(s) 31, 1037
BstAPI GCANNNNNTGC 1 cut(s) 367
BstBAI YACGTR 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 375, 539
BstDEI CTNAG 3 cut(s) 53, 356, 983
BstDSI CCRYGG 1 cut(s) 878
BstEII GGTNACC 2 cut(s) 650, 823
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 2 cut(s) 910, 938
BstHHI GCGC 1 cut(s) 910
BstKTI GATC 4 cut(s) 71, 299, 303, 808
BstMAI GTCTC 1 cut(s) 1178
BstMBI GATC 4 cut(s) 68, 296, 300, 805
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 5 cut(s) 326, 367, 543, 881, 935
BstPI GGTNACC 2 cut(s) 650, 823
BstSCI CCNGG 1 cut(s) 654
BstSFI CTRYAG 3 cut(s) 633, 834, 1021
BstSLI GKGCMC 1 cut(s) 279
BstUI CGCG 2 cut(s) 910, 938
BstV1I GCAGC 3 cut(s) 354, 820, 1157
BstV2I GAAGAC 2 cut(s) 780, 960
BstZI CGGCCG 1 cut(s) 213
Bsu15I ATCGAT 2 cut(s) 299, 780
BsuRI GGCC 5 cut(s) 215, 341, 579, 735, 884
BsuTUI ATCGAT 2 cut(s) 299, 780
BtgI CCRYGG 1 cut(s) 878
BtsCI GGATG 1 cut(s) 310
Cac8I GCNNGC 2 cut(s) 375, 539
CfoI GCGC 1 cut(s) 910
Cfr10I RCCGGY 2 cut(s) 978, 1122
Cfr13I GGNCC 3 cut(s) 381, 733, 882
ClaI ATCGAT 2 cut(s) 299, 780
Csp6I GTAC 3 cut(s) 183, 643, 1015
CviAII CATG 7 cut(s) 378, 674, 746, 830, 860, 1133, 1138
CviQI GTAC 3 cut(s) 183, 643, 1015
DdeI CTNAG 3 cut(s) 53, 356, 983
DpnI GATC 4 cut(s) 70, 298, 302, 807
DpnII GATC 4 cut(s) 68, 296, 300, 805
DraIII CACNNNGTG 1 cut(s) 283
EaeI YGGCCR 1 cut(s) 213
EagI CGGCCG 1 cut(s) 213
Eam1104I CTCTTC 2 cut(s) 31, 1037
EarI CTCTTC 2 cut(s) 31, 1037
EciI GGCGGA 1 cut(s) 344
EclXI CGGCCG 1 cut(s) 213
Eco147I AGGCCT 1 cut(s) 341
Eco24I GRGCYC 1 cut(s) 609
Eco47I GGWCC 1 cut(s) 381
Eco52I CGGCCG 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 611
Eco91I GGTNACC 2 cut(s) 650, 823
EcoO65I GGTNACC 2 cut(s) 650, 823
EcoRI GAATTC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 609
FaeI CATG 7 cut(s) 381, 677, 749, 833, 863, 1136, 1141
FaqI GGGAC 2 cut(s) 118, 1109
FatI CATG 7 cut(s) 377, 673, 745, 829, 859, 1132, 1137
FauNDI CATATG 1 cut(s) 413
FbaI TGATCA 1 cut(s) 805
FblI GTMKAC 1 cut(s) 975
Fnu4HI GCNGC 5 cut(s) 368, 371, 468, 834, 1146
FokI GGATG 1 cut(s) 297
FriOI GRGCYC 1 cut(s) 609
Fsp4HI GCNGC 5 cut(s) 368, 371, 468, 834, 1146
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 909
GluI GCNGC 5 cut(s) 368, 371, 468, 834, 1146
GsaI CCCAGC 2 cut(s) 66, 1051
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 5 cut(s) 215, 341, 579, 735, 884
HapII CCGG 5 cut(s) 656, 852, 979, 1123, 1155
HhaI GCGC 1 cut(s) 910
Hin1II CATG 7 cut(s) 381, 677, 749, 833, 863, 1136, 1141
Hin6I GCGC 1 cut(s) 908
HinP1I GCGC 1 cut(s) 908
HincII GTYRAC 1 cut(s) 1120
HindII GTYRAC 1 cut(s) 1120
HinfI GANTC 6 cut(s) 31, 177, 191, 556, 710, 866
HpaII CCGG 5 cut(s) 656, 852, 979, 1123, 1155
HphI GGTGA 3 cut(s) 410, 662, 809
Hpy166II GTNNAC 4 cut(s) 268, 976, 1120, 1186
Hpy188I TCNGA 6 cut(s) 21, 48, 81, 385, 715, 810
Hpy188III TCNNGA 3 cut(s) 97, 613, 852
Hpy8I GTNNAC 4 cut(s) 268, 976, 1120, 1186
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 208, 724, 907
HpyCH4III ACNGT 2 cut(s) 587, 680
HpyCH4IV ACGT 2 cut(s) 282, 513
HpyCH4V TGCA 7 cut(s) 290, 510, 518, 541, 551, 562, 836
HpyF10VI GCNNNNNNNGC 5 cut(s) 326, 367, 543, 881, 935
HpyF3I CTNAG 3 cut(s) 53, 356, 983
HpySE526I ACGT 2 cut(s) 282, 513
Hsp92II CATG 7 cut(s) 381, 677, 749, 833, 863, 1136, 1141
HspAI GCGC 1 cut(s) 908
Kpn2I TCCGGA 1 cut(s) 851
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 4 cut(s) 68, 296, 300, 805
LguI GCTCTTC 1 cut(s) 1037
LmnI GCTCC 5 cut(s) 115, 150, 483, 880, 1006
Lsp1109I GCAGC 3 cut(s) 354, 820, 1157
LweI GCATC 3 cut(s) 319, 527, 938
MaeI CTAG 1 cut(s) 138
MaeII ACGT 2 cut(s) 282, 513
MaeIII GTNAC 5 cut(s) 416, 650, 669, 682, 823
MalI GATC 4 cut(s) 70, 298, 302, 807
MboI GATC 4 cut(s) 68, 296, 300, 805
MboII GAAGA 4 cut(s) 18, 785, 965, 1054
MhlI GDGCHC 4 cut(s) 137, 279, 609, 877
MluCI AATT 4 cut(s) 57, 92, 725, 737
MlyI GAGTC 2 cut(s) 25, 719
MmeI TCCRAC 3 cut(s) 226, 408, 1091
MroI TCCGGA 1 cut(s) 851
MroXI GAANNNNTTC 1 cut(s) 917
MseI TTAA 3 cut(s) 432, 756, 1056
MslI CAYNNNNRTG 2 cut(s) 423, 678
MspA1I CMGCKG 1 cut(s) 373
MspI CCGG 5 cut(s) 656, 852, 979, 1123, 1155
MspR9I CCNGG 1 cut(s) 656
MvnI CGCG 2 cut(s) 910, 938
MwoI GCNNNNNNNGC 5 cut(s) 326, 367, 543, 881, 935
NciI CCSGG 1 cut(s) 656
NdeI CATATG 1 cut(s) 413
NdeII GATC 4 cut(s) 68, 296, 300, 805
NlaIII CATG 7 cut(s) 381, 677, 749, 833, 863, 1136, 1141
NlaIV GGNNCC 2 cut(s) 479, 1002
NmeAIII GCCGAG 2 cut(s) 191, 844
NmuCI GTSAC 2 cut(s) 416, 650
PceI AGGCCT 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 1037
PcsI WCGNNNNNNNCGW 4 cut(s) 17, 255, 279, 957
PdmI GAANNNNTTC 1 cut(s) 917
PfeI GAWTC 4 cut(s) 177, 191, 556, 866
PflMI CCANNNNNTGG 1 cut(s) 1138
PkrI GCNGC 5 cut(s) 369, 372, 469, 835, 1147
PleI GAGTC 2 cut(s) 25, 718
PpsI GAGTC 2 cut(s) 25, 718
Ppu21I YACGTR 1 cut(s) 283
PsiI TTATAA 1 cut(s) 663
Psp1406I AACGTT 1 cut(s) 513
PspEI GGTNACC 2 cut(s) 650, 823
PspFI CCCAGC 2 cut(s) 62, 1047
PspN4I GGNNCC 2 cut(s) 479, 1002
PspPI GGNCC 3 cut(s) 381, 733, 882
PstI CTGCAG 1 cut(s) 838
RsaI GTAC 3 cut(s) 184, 644, 1016
RsaNI GTAC 3 cut(s) 183, 643, 1015
RseI CAYNNNNRTG 2 cut(s) 423, 678
SapI GCTCTTC 1 cut(s) 1037
SaqAI TTAA 3 cut(s) 432, 756, 1056
SatI GCNGC 5 cut(s) 368, 371, 468, 834, 1146
Sau3AI GATC 4 cut(s) 68, 296, 300, 805
Sau96I GGNCC 3 cut(s) 381, 733, 882
ScaI AGTACT 2 cut(s) 184, 1016
SchI GAGTC 2 cut(s) 25, 719
ScrFI CCNGG 1 cut(s) 656
SduI GDGCHC 4 cut(s) 137, 279, 609, 877
SfaNI GCATC 3 cut(s) 319, 527, 938
SfcI CTRYAG 3 cut(s) 633, 834, 1021
SinI GGWCC 1 cut(s) 381
SmiMI CAYNNNNRTG 2 cut(s) 423, 678
SpeI ACTAGT 1 cut(s) 137
Sse9I AATT 4 cut(s) 57, 92, 725, 737
SseBI AGGCCT 1 cut(s) 341
SsiI CCGC 7 cut(s) 329, 371, 467, 470, 565, 910, 938
SspI AATATT 1 cut(s) 761
SspMI CTAG 1 cut(s) 138
StuI AGGCCT 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 654
TaaI ACNGT 2 cut(s) 587, 680
TaiI ACGT 2 cut(s) 285, 516
TaqI TCGA 4 cut(s) 29, 249, 299, 780
TasI AATT 4 cut(s) 57, 92, 725, 737
TatI WGTACW 2 cut(s) 182, 1014
TauI GCSGC 2 cut(s) 373, 470
TfiI GAWTC 4 cut(s) 177, 191, 556, 866
Tru1I TTAA 3 cut(s) 432, 756, 1056
Tru9I TTAA 3 cut(s) 432, 756, 1056
TseFI GTSAC 2 cut(s) 416, 650
TseI GCWGC 3 cut(s) 367, 833, 1145
Tsp45I GTSAC 2 cut(s) 416, 650
TspDTI ATGAA 2 cut(s) 104, 462
Van91I CCANNNNNTGG 1 cut(s) 1138
VpaK11BI GGWCC 1 cut(s) 381
XapI RAATTY 2 cut(s) 57, 92
XmiI GTMKAC 1 cut(s) 975
XmnI GAANNNNTTC 1 cut(s) 917
XspI CTAG 1 cut(s) 138
ZrmI AGTACT 2 cut(s) 184, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.