FvH4_5g21510

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000255
Physical Location & Seq
Reverse (-)
12981276 .. 12981590
315 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21510.t1

Sequence Viewer

Length: 315 bp
ATGGACTCCCTAGTCGTCGACTTTAACAACCTTAACAAACCAACAACGCCAAAACCCCTAATGGGCTTCACCGAGAACAACTCAGCCACATACCTCTCCTCCGGCAACCCCTGCCTCGACCTCTTCTTCCACGCCGTCCCCGACACTCTCTCCTCCTACCTCCATCAACAACTCCCTCTCGCTTGGGCCCACGACGCCCTCACCACCCTCAAGCTCATCTGCAACCTCCGTGGCGTCCGCGGCACTAGAAAGTCCGACAAAGAAGGCTTATACACGGCCGTGCTCTGGCTCCCAGCCACCACCCCAAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

105

Amino Acids

11.5

Weight (kDa)

7.81

Isoelectric Point (pI)

19.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 24 - 103 8.4e-27 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AccI GTMKAC 1 cut(s) 18
AccII CGCG 1 cut(s) 240
AciI CCGC 2 cut(s) 238, 240
AcoI YGGCCR 1 cut(s) 276
AcyI GRCGYC 2 cut(s) 195, 234
AfiI CCNNNNNNNGG 2 cut(s) 62, 285
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw21I GWGCWC 1 cut(s) 285
AoxI GGCC 2 cut(s) 186, 276
ApaI GGGCCC 1 cut(s) 190
AspS9I GGNCC 2 cut(s) 186, 187
AsuHPI GGTGA 2 cut(s) 61, 193
BaeGI GKGCMC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 285
BccI CCATC 1 cut(s) 171
BceAI ACGGC 3 cut(s) 119, 263, 291
BfaI CTAG 3 cut(s) 11, 246, 313
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 186, 187
BmiI GGNNCC 2 cut(s) 188, 290
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpuEI CTTGAG 1 cut(s) 194
BsaHI GRCGYC 2 cut(s) 195, 234
BsaJI CCNNGG 2 cut(s) 229, 238
BsaXI ACNNNNNCTCC 4 cut(s) 83, 113, 134, 164
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 285
BseDI CCNNGG 2 cut(s) 229, 238
BseLI CCNNNNNNNGG 2 cut(s) 62, 285
BseMII CTCAG 1 cut(s) 96
BseRI GAGGAG 2 cut(s) 88, 142
BseSI GKGCMC 1 cut(s) 190
BseX3I CGGCCG 1 cut(s) 276
BseYI CCCAGC 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 240
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 2 cut(s) 188, 278
BsiEI CGRYCG 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 62, 285
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 2 cut(s) 188, 278
Bsp120I GGGCCC 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 190, 285
BspACI CCGC 2 cut(s) 238, 240
BspANI GGCC 2 cut(s) 188, 278
BspCNI CTCAG 1 cut(s) 95
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 188, 290
BssECI CCNNGG 2 cut(s) 229, 238
BssNI GRCGYC 2 cut(s) 195, 234
Bst6I CTCTTC 1 cut(s) 128
BstACI GRCGYC 2 cut(s) 195, 234
BstAPI GCANNNNNTGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 82
BstDSI CCRYGG 2 cut(s) 229, 238
BstFNI CGCG 1 cut(s) 240
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 3 cut(s) 111, 194, 240
BstSLI GKGCMC 1 cut(s) 190
BstUI CGCG 1 cut(s) 240
BstZI CGGCCG 1 cut(s) 276
BsuRI GGCC 2 cut(s) 188, 278
BtgI CCRYGG 2 cut(s) 229, 238
Cfr13I GGNCC 2 cut(s) 186, 187
Cfr42I CCGCGG 1 cut(s) 241
CseI GACGC 2 cut(s) 203, 223
CspCI CAANNNNNGTGG 2 cut(s) 211, 246
CviJI RGCY 8 cut(s) 66, 86, 188, 214, 267, 278, 289, 296
CviKI_1 RGCY 8 cut(s) 66, 86, 188, 214, 267, 278, 289, 296
DdeI CTNAG 1 cut(s) 82
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
EaeI YGGCCR 1 cut(s) 276
EagI CGGCCG 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EclXI CGGCCG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 190
Eco52I CGGCCG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 190
FaiI YATR 2 cut(s) 91, 271
FaqI GGGAC 1 cut(s) 122
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 1 cut(s) 241
FspBI CTAG 3 cut(s) 11, 246, 313
GluI GCNGC 1 cut(s) 241
GsaI CCCAGC 1 cut(s) 296
HaeIII GGCC 2 cut(s) 188, 278
HapII CCGG 1 cut(s) 102
HgaI GACGC 2 cut(s) 203, 223
Hin1I GRCGYC 2 cut(s) 195, 234
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 102
HphI GGTGA 2 cut(s) 61, 193
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 2 cut(s) 20, 197
HpyAV CCTTC 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 194, 240
HpyF3I CTNAG 1 cut(s) 82
Hsp92I GRCGYC 2 cut(s) 195, 234
KspI CCGCGG 1 cut(s) 241
LmnI GCTCC 1 cut(s) 294
LpnPI CCDG 4 cut(s) 115, 124, 271, 306
MaeI CTAG 3 cut(s) 11, 246, 313
MboII GAAGA 2 cut(s) 115, 118
MhlI GDGCHC 2 cut(s) 190, 285
MmeI TCCRAC 1 cut(s) 279
MseI TTAA 2 cut(s) 24, 33
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 3 cut(s) 111, 194, 240
NlaIV GGNNCC 2 cut(s) 188, 290
OliI CACNNNNGTG 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PkrI GCNGC 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 188, 290
PspOMI GGGCCC 1 cut(s) 186
PspPI GGNCC 2 cut(s) 186, 187
RseI CAYNNNNRTG 1 cut(s) 278
SacII CCGCGG 1 cut(s) 241
SalI GTCGAC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 24, 33
SatI GCNGC 1 cut(s) 241
Sau96I GGNCC 2 cut(s) 186, 187
SduI GDGCHC 2 cut(s) 190, 285
SetI ASST 6 cut(s) 33, 96, 123, 162, 216, 228
Sfr303I CCGCGG 1 cut(s) 241
SgrBI CCGCGG 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SsiI CCGC 2 cut(s) 238, 240
SspMI CTAG 3 cut(s) 11, 246, 313
TaqI TCGA 2 cut(s) 18, 117
TauI GCSGC 1 cut(s) 243
Tru1I TTAA 2 cut(s) 24, 33
Tru9I TTAA 2 cut(s) 24, 33
TspGWI ACGGA 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 18
XspI CTAG 3 cut(s) 11, 246, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.