Rroxscaffold_5G00370900

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000255
Physical Location & Seq
Reverse (-)
52572738 .. 52575841
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00370900.1

Sequence Viewer

Length: 1959 bp
ATGGCTCCTCCCAGTCTTCTCGGTCCTCCCGAGCTCCACAAACCCTCACCCACCACCACCGTTCCGCCACCACCCCAACCCGAATCCAAACCCGACACCGGCGAACCCTTCGTGGACCTGATGGTGGCGAATTTCAACGACGTCGGAACCAAGCACGACCTCCCGATGGGACTGACGGAGAACGCCTCCGCCACGTTTCTCTCCACCGGCAACCCCTGCCTCGATCTCTTCTTCCACGTCGTCCCGAACACTCCGGCCGACTACCTCACCGAGCAGCTCCCCAAGGCCTGGGACCGCGACGCCCTCACCACGCTCAAGCTCATCTGCAACCTCCGCGGCGTGCGTGGCACCGGGAAATCCGACAAGGAAGGCTTCCACACGGCGGCGTTTTGGCTCCACAAGCACCACCCCAAAACCCTCGCCTGCAACCTCGCGTCCTTGGCCGAGTTCGGTTACTTCAAGGACCTGCCGGAGATCGTGTACCGGCTCCTGGAGGGCGAGGACGTGAGGAAGAAACAGAAGGCGGAGTGGCGGGGGAGGAAACGCGGCGGAGGCAGGAAGCGACGCGAGTCGAGTCAGGAACCCGGGTCCGACGGCGAAACCGGGTCGAGGTCCGAGAAGAAGAGAATCAGGAGCGAGGTGCCGAAGGAGGAGAGGGAGAAGAAGGCCAAGGAGTGGCAGATGGGGGAGAAGGCCAAGGCGAGCGGGTTGAGGAAGGAGAAGAAGATGGCCATGGCCAAGAAGGTGGTGGTCCGGTACGAGCGCGACCCGGATTTCCGGTTCCTTCACGACCGGGTCTCGGATCTTTTCGCCGAGTGCTTGAAATCCGATATGGAGAATCTCAAGTCCAATCAGCTCAACAAGATAACCCTAGCGGCGAAGTGGTGCCCTTCGATTGACTCCTCATTCGATCGGGCCACTTTGATCTGTGAGAGCATTGCCAAGAAGATTTTCCCGCGCGAATCGAACAAGGAATACGAAGGCGTGGAGGAGTCACATTATGCTTACAGAGTGAGGGACCGGCTGAGGAAGGAGGTGCTGGTGCCGCTGAGGAAGGCGTTGGAGTTGCCGGAGATTTACATGGGGGCAAACCAGTGGGGGAAGATTCCGTATAACAGAGTGGCCTCTGTGGCAATGAAGGTGTACAAGGACAAGTTCAAGAAGCACGATGAGGAGAGGTTTAATAAGTATTTGGAGGATGTGAAAGCCGGGAAGGCTAAGATTGCGGCGGGAGCTCTGCTTCCGCATGAGATTATTGAGTCTCTGAATGATGGTGAGGGTGATGATGGGCAAGTTGCGGAGCTTCAGTGGAAGAGAATGGTGGAGGATATGTTGAAGTTGGGGAAGATGAAGAACTGTCTGGCTGTGTGTGATGTGAGTGGGAGCATGAGTGGGACTCCGATGGAGGTGGCGGTGGCGTTGGGGCTGTTGGTTTCGGAGTTGAGTGAGGACCCTTGGAAAGGGTTGGTGATCAGTTTCAGTGCGGATCCTCAGCTGCATTTGGTGAAGGGGGAGAGTCTTAAGGACAAGACTGATTTCATCAGGAATATGGATTGGGGGATGAACACTAATTTCCAGAAGGTGTTTGATTTGCTTCTGAAAGTGGCTCTCAAGGGGAATTTGAAGCCGGAGAATATGATCAAGAGGCTCTTTGTGTTCAGTGACATGGAGTTTGATGAGGCTTCGGAAAATCAGTGGGAGACTGATTATGAGGTGATAGAGAAGAAGTTTAAGGAGGCCGGGTATGGGGATGTGATTCCGCAGTTGGTGTTTTGGAATCTGAGGCACTCCAGGTCTGTCCCTGTGCCTGGGAATCAGAAAGGGACTGCTCTGTTGAGTGGATTCTCTAAGAACTTGCTGAAACTCTTTGTGGATAATGATGGGGAAGTTCAGCCGGATATGTTCATGGATTTGGCCATTGCTGGACCAGAGTATCAGAAGCTGGTTGTGCTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

652

Amino Acids

73.78

Weight (kDa)

7.92

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 59 - 450 5.7e-143 Domain of unknown function (DUF2828)
DUF7788 PF25043 452 - 630 7.2e-79 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 474
AccB1I GGYRCC 4 cut(s) 347, 640, 885, 1042
AccB7I CCANNNNNTGG 2 cut(s) 288, 675
AccBSI CCGCTC 1 cut(s) 705
AccII CGCG 8 cut(s) 297, 336, 434, 546, 567, 765, 958, 960
AclWI GGATC 3 cut(s) 810, 1481, 1494
AcoI YGGCCR 5 cut(s) 255, 441, 729, 735, 1914
AcsI RAATTY 2 cut(s) 130, 1618
AcuI CTGAAG 1 cut(s) 1289
AcyI GRCGYC 2 cut(s) 141, 300
AfaI GTAC 3 cut(s) 482, 758, 1145
AflII CTTAAG 1 cut(s) 1520
AgsI TTSAA 6 cut(s) 136, 460, 823, 1159, 1336, 1624
AjiI CACGTC 2 cut(s) 238, 505
AjnI CCWGG 4 cut(s) 287, 489, 1790, 1807
AjuI GAANNNNNNNTTGG 2 cut(s) 935, 967
AloI GAACNNNNNNTCC 2 cut(s) 764, 796
AluBI AGCT 8 cut(s) 34, 277, 319, 856, 1235, 1303, 1495, 1942
AluI AGCT 8 cut(s) 34, 277, 319, 856, 1235, 1303, 1495, 1942
Alw21I GWGCWC 2 cut(s) 36, 1237
Alw26I GTCTC 3 cut(s) 802, 1266, 1694
AlwI GGATC 3 cut(s) 810, 1481, 1494
AlwNI CAGNNNCTG 1 cut(s) 1942
Ama87I CYCGRG 2 cut(s) 29, 584
ApeKI GCWGC 2 cut(s) 274, 1495
ApoI RAATTY 2 cut(s) 130, 1618
ArsI GACNNNNNNTTYG 4 cut(s) 890, 922, 1655, 1687
Asp700I GAANNNNTTC 1 cut(s) 950
AspLEI GCGC 2 cut(s) 765, 960
AsuC2I CCSGG 8 cut(s) 352, 585, 586, 604, 770, 794, 1210, 1741
AsuHPI GGTGA 8 cut(s) 39, 259, 298, 1286, 1292, 1480, 1516, 1726
AvaI CYCGRG 2 cut(s) 29, 584
BaeGI GKGCMC 1 cut(s) 890
BaeI ACNNNNGTAYC 2 cut(s) 1916, 1949
BalI TGGCCA 3 cut(s) 731, 737, 1916
BamHI GGATCC 1 cut(s) 1486
BanI GGYRCC 4 cut(s) 347, 640, 885, 1042
BanII GRGCYC 2 cut(s) 36, 1237
BbsI GAAGAC 1 cut(s) 8
Bbv12I GWGCWC 2 cut(s) 36, 1237
BbvCI CCTCAGC 3 cut(s) 1025, 1049, 1491
BbvI GCAGC 2 cut(s) 286, 1482
BccI CCATC 8 cut(s) 115, 160, 676, 721, 1265, 1280, 1396, 1874
BceAI ACGGC 2 cut(s) 396, 610
BciT130I CCWGG 4 cut(s) 289, 491, 1792, 1809
BclI TGATCA 2 cut(s) 1470, 1638
BcnI CCSGG 8 cut(s) 352, 585, 586, 604, 770, 794, 1210, 1741
BcoDI GTCTC 3 cut(s) 802, 1266, 1694
BfaI CTAG 1 cut(s) 872
BfrI CTTAAG 1 cut(s) 1520
BfuAI ACCTGC 1 cut(s) 474
BglI GCCNNNNNGGC 2 cut(s) 1130, 1214
BisI GCNGC 8 cut(s) 275, 337, 384, 547, 876, 1046, 1227, 1496
BlsI GCNGC 8 cut(s) 276, 338, 385, 548, 877, 1047, 1228, 1497
BmeT110I CYCGRG 2 cut(s) 29, 584
BmgBI CACGTC 2 cut(s) 238, 505
BmrI ACTGGG 1 cut(s) 6
BmuI ACTGGG 1 cut(s) 6
BoxI GACNNNNGTC 1 cut(s) 568
BpiI GAAGAC 1 cut(s) 8
BplI GAGNNNNNCTC 4 cut(s) 170, 202, 1381, 1413
BpmI CTGGAG 2 cut(s) 512, 1774
Bpu10I CCTNAGC 3 cut(s) 1025, 1049, 1491
BpuEI CTTGAG 3 cut(s) 299, 827, 1595
BpuMI CCSGG 8 cut(s) 352, 585, 586, 604, 770, 794, 1210, 1741
BsaHI GRCGYC 2 cut(s) 141, 300
BsaI GGTCTC 1 cut(s) 802
BsaWI WCCGGW 2 cut(s) 753, 777
Bse118I RCCGGY 4 cut(s) 98, 206, 483, 1020
Bse1I ACTGG 2 cut(s) 12, 1093
Bse3DI GCAATG 3 cut(s) 936, 1140, 1917
BseBI CCWGG 4 cut(s) 289, 491, 1792, 1809
BseGI GGATG 3 cut(s) 1204, 1566, 1756
BseMI GCAATG 3 cut(s) 936, 1140, 1917
BseMII CTCAG 4 cut(s) 1016, 1040, 1505, 1772
BseNI ACTGG 2 cut(s) 12, 1093
BseRI GAGGAG 4 cut(s) 665, 892, 1004, 1187
BseSI GKGCMC 1 cut(s) 890
BseX3I CGGCCG 1 cut(s) 255
BseXI GCAGC 2 cut(s) 286, 1482
Bsh1236I CGCG 8 cut(s) 297, 336, 434, 546, 567, 765, 958, 960
Bsh1285I CGRYCG 3 cut(s) 258, 793, 913
BshNI GGYRCC 4 cut(s) 347, 640, 885, 1042
BsiEI CGRYCG 3 cut(s) 258, 793, 913
BsiHKAI GWGCWC 2 cut(s) 36, 1237
BsiHKCI CYCGRG 2 cut(s) 29, 584
BslFI GGGAC 7 cut(s) 183, 227, 305, 1031, 1408, 1784, 1837
BsmAI GTCTC 3 cut(s) 802, 1266, 1694
BsmFI GGGAC 7 cut(s) 183, 227, 305, 1031, 1408, 1784, 1837
Bso31I GGTCTC 1 cut(s) 802
BsoBI CYCGRG 2 cut(s) 29, 584
Bsp1286I GDGCHC 3 cut(s) 36, 890, 1237
Bsp1407I TGTACA 1 cut(s) 1143
Bsp143I GATC 8 cut(s) 223, 474, 802, 910, 924, 1470, 1486, 1638
Bsp19I CCATGG 1 cut(s) 732
BspCNI CTCAG 4 cut(s) 1017, 1041, 1504, 1773
BspFNI CGCG 8 cut(s) 297, 336, 434, 546, 567, 765, 958, 960
BspMI ACCTGC 1 cut(s) 474
BspPI GGATC 3 cut(s) 810, 1481, 1494
BspT107I GGYRCC 4 cut(s) 347, 640, 885, 1042
BspTI CTTAAG 1 cut(s) 1520
BspTNI GGTCTC 1 cut(s) 802
BsrBI CCGCTC 1 cut(s) 705
BsrDI GCAATG 3 cut(s) 936, 1140, 1917
BsrFI RCCGGY 4 cut(s) 98, 206, 483, 1020
BsrGI TGTACA 1 cut(s) 1143
BsrI ACTGG 2 cut(s) 12, 1093
BssAI RCCGGY 4 cut(s) 98, 206, 483, 1020
BssMI GATC 8 cut(s) 223, 474, 802, 910, 924, 1470, 1486, 1638
BssNI GRCGYC 2 cut(s) 141, 300
BssT1I CCWWGG 6 cut(s) 282, 438, 669, 696, 732, 1454
Bst2UI CCWGG 4 cut(s) 289, 491, 1792, 1809
Bst4CI ACNGT 2 cut(s) 61, 1358
Bst6I CTCTTC 3 cut(s) 233, 617, 1307
BstACI GRCGYC 2 cut(s) 141, 300
BstAFI CTTAAG 1 cut(s) 1520
BstAPI GCANNNNNTGC 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 1143
BstC8I GCNNGC 3 cut(s) 341, 424, 703
BstDEI CTNAG 6 cut(s) 1025, 1049, 1218, 1491, 1781, 1848
BstDSI CCRYGG 2 cut(s) 334, 732
BstENI CCTNNNNNAGG 1 cut(s) 1458
BstF5I GGATG 3 cut(s) 1204, 1566, 1756
BstFNI CGCG 8 cut(s) 297, 336, 434, 546, 567, 765, 958, 960
BstHHI GCGC 2 cut(s) 765, 960
BstKTI GATC 8 cut(s) 226, 477, 805, 913, 927, 1473, 1489, 1641
BstMAI GTCTC 3 cut(s) 802, 1266, 1694
BstMBI GATC 8 cut(s) 223, 474, 802, 910, 924, 1470, 1486, 1638
BstMCI CGRYCG 3 cut(s) 258, 793, 913
BstNI CCWGG 4 cut(s) 289, 491, 1792, 1809
BstPAI GACNNNNGTC 1 cut(s) 568
BstSLI GKGCMC 1 cut(s) 890
BstUI CGCG 8 cut(s) 297, 336, 434, 546, 567, 765, 958, 960
BstV1I GCAGC 2 cut(s) 286, 1482
BstV2I GAAGAC 1 cut(s) 8
BstX2I RGATCY 2 cut(s) 802, 1486
BstXI CCANNNNNNTGG 1 cut(s) 745
BstYI RGATCY 2 cut(s) 802, 1486
BstZI CGGCCG 1 cut(s) 255
BtgI CCRYGG 2 cut(s) 334, 732
BtrI CACGTC 2 cut(s) 238, 505
BtsCI GGATG 3 cut(s) 1204, 1566, 1756
BtsIMutI CAGTG 5 cut(s) 1100, 1313, 1486, 1666, 1700
BveI ACCTGC 1 cut(s) 474
Cac8I GCNNGC 3 cut(s) 341, 424, 703
CaiI CAGNNNCTG 1 cut(s) 1942
CfoI GCGC 2 cut(s) 765, 960
Cfr10I RCCGGY 4 cut(s) 98, 206, 483, 1020
Cfr42I CCGCGG 1 cut(s) 337
Cfr9I CCCGGG 1 cut(s) 584
CseI GACGC 3 cut(s) 308, 423, 573
Csp6I GTAC 3 cut(s) 481, 757, 1144
CviAII CATG 6 cut(s) 733, 1081, 1247, 1387, 1666, 1906
CviQI GTAC 3 cut(s) 481, 757, 1144
DdeI CTNAG 6 cut(s) 1025, 1049, 1218, 1491, 1781, 1848
DpnI GATC 8 cut(s) 225, 476, 804, 912, 926, 1472, 1488, 1640
DpnII GATC 8 cut(s) 223, 474, 802, 910, 924, 1470, 1486, 1638
EaeI YGGCCR 5 cut(s) 255, 441, 729, 735, 1914
EagI CGGCCG 1 cut(s) 255
Eam1104I CTCTTC 3 cut(s) 233, 617, 1307
EarI CTCTTC 3 cut(s) 233, 617, 1307
EciI GGCGGA 4 cut(s) 54, 178, 539, 564
Ecl136II GAGCTC 2 cut(s) 34, 1235
EclXI CGGCCG 1 cut(s) 255
Eco130I CCWWGG 6 cut(s) 282, 438, 669, 696, 732, 1454
Eco147I AGGCCT 1 cut(s) 287
Eco24I GRGCYC 2 cut(s) 36, 1237
Eco31I GGTCTC 1 cut(s) 802
Eco52I CGGCCG 1 cut(s) 255
Eco53kI GAGCTC 2 cut(s) 34, 1235
Eco57I CTGAAG 1 cut(s) 1289
Eco88I CYCGRG 2 cut(s) 29, 584
EcoICRI GAGCTC 2 cut(s) 34, 1235
EcoNI CCTNNNNNAGG 1 cut(s) 1458
EcoO109I RGGNCCY 2 cut(s) 463, 1450
EcoRII CCWGG 4 cut(s) 287, 489, 1790, 1807
EcoT14I CCWWGG 6 cut(s) 282, 438, 669, 696, 732, 1454
EcoT38I GRGCYC 2 cut(s) 36, 1237
ErhI CCWWGG 6 cut(s) 282, 438, 669, 696, 732, 1454
FaeI CATG 6 cut(s) 736, 1084, 1250, 1390, 1669, 1909
FalI AAGNNNNNCTT 4 cut(s) 356, 388, 1634, 1666
FaqI GGGAC 7 cut(s) 183, 227, 305, 1031, 1408, 1784, 1837
FatI CATG 6 cut(s) 732, 1080, 1246, 1386, 1665, 1905
FauI CCCGC 4 cut(s) 525, 698, 963, 1222
FbaI TGATCA 2 cut(s) 1470, 1638
Fnu4HI GCNGC 8 cut(s) 275, 337, 384, 547, 876, 1046, 1227, 1496
FokI GGATG 3 cut(s) 1211, 1573, 1763
FriOI GRGCYC 2 cut(s) 36, 1237
Fsp4HI GCNGC 8 cut(s) 275, 337, 384, 547, 876, 1046, 1227, 1496
FspBI CTAG 1 cut(s) 872
GlaI GCGC 2 cut(s) 764, 959
GluI GCNGC 8 cut(s) 275, 337, 384, 547, 876, 1046, 1227, 1496
GsuI CTGGAG 2 cut(s) 512, 1774
HgaI GACGC 3 cut(s) 308, 423, 573
HhaI GCGC 2 cut(s) 765, 960
Hin1I GRCGYC 2 cut(s) 141, 300
Hin1II CATG 6 cut(s) 736, 1084, 1250, 1390, 1669, 1909
Hin6I GCGC 2 cut(s) 763, 958
HinP1I GCGC 2 cut(s) 763, 958
HphI GGTGA 8 cut(s) 39, 259, 298, 1286, 1292, 1480, 1516, 1726
Hpy166II GTNNAC 3 cut(s) 115, 481, 1144
Hpy8I GTNNAC 3 cut(s) 115, 481, 1144
Hpy99I CGWCG 6 cut(s) 143, 146, 242, 302, 567, 596
HpyCH4III ACNGT 2 cut(s) 61, 1358
HpyCH4IV ACGT 4 cut(s) 141, 194, 237, 504
HpyCH4V TGCA 3 cut(s) 327, 426, 1498
HpyF3I CTNAG 6 cut(s) 1025, 1049, 1218, 1491, 1781, 1848
HpySE526I ACGT 4 cut(s) 141, 194, 237, 504
Hsp92I GRCGYC 2 cut(s) 141, 300
Hsp92II CATG 6 cut(s) 736, 1084, 1250, 1390, 1669, 1909
HspAI GCGC 2 cut(s) 763, 958
Ksp22I TGATCA 2 cut(s) 1470, 1638
KspI CCGCGG 1 cut(s) 337
Kzo9I GATC 8 cut(s) 223, 474, 802, 910, 924, 1470, 1486, 1638
LmnI GCTCC 9 cut(s) 10, 39, 282, 399, 492, 633, 1232, 1300, 1383
Lsp1109I GCAGC 2 cut(s) 286, 1482
MaeI CTAG 1 cut(s) 872
MaeII ACGT 4 cut(s) 141, 194, 237, 504
MaeIII GTNAC 3 cut(s) 452, 993, 1661
MalI GATC 8 cut(s) 225, 476, 804, 912, 926, 1472, 1488, 1640
MbiI CCGCTC 1 cut(s) 705
MboI GATC 8 cut(s) 223, 474, 802, 910, 924, 1470, 1486, 1638
MflI RGATCY 2 cut(s) 802, 1486
MhlI GDGCHC 3 cut(s) 36, 890, 1237
MlsI TGGCCA 3 cut(s) 731, 737, 1916
MluCI AATT 3 cut(s) 130, 1570, 1618
MluNI TGGCCA 3 cut(s) 731, 737, 1916
MlyI GAGTC 7 cut(s) 578, 583, 893, 1001, 1268, 1390, 1525
MmeI TCCRAC 4 cut(s) 124, 384, 615, 1041
Mox20I TGGCCA 3 cut(s) 731, 737, 1916
MroXI GAANNNNTTC 1 cut(s) 950
MscI TGGCCA 3 cut(s) 731, 737, 1916
MseI TTAA 3 cut(s) 1182, 1521, 1731
Msp20I TGGCCA 3 cut(s) 731, 737, 1916
MspA1I CMGCKG 3 cut(s) 336, 1048, 1495
MspCI CTTAAG 1 cut(s) 1520
MvaI CCWGG 4 cut(s) 289, 491, 1792, 1809
MvnI CGCG 8 cut(s) 297, 336, 434, 546, 567, 765, 958, 960
NciI CCSGG 8 cut(s) 352, 585, 586, 604, 770, 794, 1210, 1741
NcoI CCATGG 1 cut(s) 732
NdeII GATC 8 cut(s) 223, 474, 802, 910, 924, 1470, 1486, 1638
NlaIII CATG 6 cut(s) 736, 1084, 1250, 1390, 1669, 1909
NmeAIII GCCGAG 2 cut(s) 469, 838
NmuCI GTSAC 2 cut(s) 993, 1661
PceI AGGCCT 1 cut(s) 287
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 950
PfeI GAWTC 9 cut(s) 83, 627, 838, 962, 1105, 1756, 1777, 1813, 1842
PflFI GACNNNGTC 1 cut(s) 794
PflMI CCANNNNNTGG 2 cut(s) 288, 675
PfoI TCCNGGA 1 cut(s) 489
PkrI GCNGC 8 cut(s) 276, 338, 385, 548, 877, 1047, 1228, 1497
Ple19I CGATCG 1 cut(s) 913
PleI GAGTC 7 cut(s) 577, 582, 893, 1000, 1267, 1390, 1524
PpsI GAGTC 7 cut(s) 577, 582, 893, 1000, 1267, 1390, 1524
PpuMI RGGWCCY 2 cut(s) 463, 1450
PshAI GACNNNNGTC 1 cut(s) 568
Psp124BI GAGCTC 2 cut(s) 36, 1237
Psp5II RGGWCCY 2 cut(s) 463, 1450
Psp6I CCWGG 4 cut(s) 287, 489, 1790, 1807
PspGI CCWGG 4 cut(s) 287, 489, 1790, 1807
PspPPI RGGWCCY 2 cut(s) 463, 1450
PsrI GAACNNNNNNTAC 2 cut(s) 959, 991
PstNI CAGNNNCTG 1 cut(s) 1942
PsuI RGATCY 2 cut(s) 802, 1486
PsyI GACNNNGTC 1 cut(s) 794
PvuI CGATCG 1 cut(s) 913
PvuII CAGCTG 1 cut(s) 1495
RsaI GTAC 3 cut(s) 482, 758, 1145
RsaNI GTAC 3 cut(s) 481, 757, 1144
SacI GAGCTC 2 cut(s) 36, 1237
SacII CCGCGG 1 cut(s) 337
SaqAI TTAA 3 cut(s) 1182, 1521, 1731
SatI GCNGC 8 cut(s) 275, 337, 384, 547, 876, 1046, 1227, 1496
Sau3AI GATC 8 cut(s) 223, 474, 802, 910, 924, 1470, 1486, 1638
SchI GAGTC 7 cut(s) 578, 583, 893, 1001, 1268, 1390, 1525
SduI GDGCHC 3 cut(s) 36, 890, 1237
Sfr303I CCGCGG 1 cut(s) 337
SgrAI CRCCGGYG 1 cut(s) 98
SgrBI CCGCGG 1 cut(s) 337
SmaI CCCGGG 1 cut(s) 586
SmlI CTYRAG 4 cut(s) 314, 842, 1520, 1610
SmoI CTYRAG 4 cut(s) 314, 842, 1520, 1610
Sse9I AATT 3 cut(s) 130, 1570, 1618
SseBI AGGCCT 1 cut(s) 287
SspMI CTAG 1 cut(s) 872
SstI GAGCTC 2 cut(s) 36, 1237
StuI AGGCCT 1 cut(s) 287
StyI CCWWGG 6 cut(s) 282, 438, 669, 696, 732, 1454
TaaI ACNGT 2 cut(s) 61, 1358
TaiI ACGT 4 cut(s) 144, 197, 240, 507
TaqI TCGA 6 cut(s) 222, 572, 608, 893, 909, 965
TaqII GACCGA 1 cut(s) 11
TasI AATT 3 cut(s) 130, 1570, 1618
TatI WGTACW 1 cut(s) 1143
TauI GCSGC 6 cut(s) 339, 386, 549, 878, 1048, 1229
TfiI GAWTC 9 cut(s) 83, 627, 838, 962, 1105, 1756, 1777, 1813, 1842
Tru1I TTAA 3 cut(s) 1182, 1521, 1731
Tru9I TTAA 3 cut(s) 1182, 1521, 1731
TscAI CASTG 5 cut(s) 1100, 1313, 1486, 1666, 1700
TseFI GTSAC 2 cut(s) 993, 1661
TseI GCWGC 2 cut(s) 274, 1495
Tsp45I GTSAC 2 cut(s) 993, 1661
TspDTI ATGAA 5 cut(s) 1151, 1364, 1528, 1577, 1894
TspGWI ACGGA 2 cut(s) 191, 1098
TspMI CCCGGG 1 cut(s) 584
TspRI CASTG 5 cut(s) 1100, 1313, 1486, 1666, 1700
Tth111I GACNNNGTC 1 cut(s) 794
Van91I CCANNNNNTGG 2 cut(s) 288, 675
Vha464I CTTAAG 1 cut(s) 1520
XagI CCTNNNNNAGG 1 cut(s) 1458
XapI RAATTY 2 cut(s) 130, 1618
XcmI CCANNNNNNNNNTGG 1 cut(s) 745
XmaI CCCGGG 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 950
XspI CTAG 1 cut(s) 872
ZraI GACGTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.